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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944573
Clone id YMU02A01NGRL0006_I01
Library
Length 423
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_I01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTATTTTTTTCAGGCGGTGATAGGAAAGAGCTGAAGCTTAGAGTGACAGGACGGATATGG
AAAGAGCAATGAATGCAGTAGTGATTGTTGTTGTATGGTGTACAACATTAACCAGCATGT
GGCGGACCTAGAAGACCATCAGTGCTCCTTGTAATATTGTCTTCAATTTTATGGTTGAAG
CCATGCAGTCTGTAAAAATGATCATCCTTTTGTTGCACTGCCTAGCACTTCAATTGGAAA
TAAGACTCTTGCAGCTGCTGTTCTTGCATGTCAGCGGCACCACGTGAGAGTAGTGCAAAA
TGATGTGCTGCTGCTGAAGCTGTATAATGGACATCATATGTACCTGAAAGAAAACATCTT
TTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id Q84JL3
Definition sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana
Align length 23
Score (bit) 50.1
E-value 4.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944573|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_I01, 5'
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arab...    50   4e-06
sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arab...    49   8e-06
sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arab...    49   8e-06
sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arab...    46   5e-05
sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT...    43   6e-04
sp|P26674|STE6_SCHPO Protein ste6 OS=Schizosaccharomyces pombe G...    30   2.9  

>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3
           OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
          Length = 326

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 289 LFFSGGDRKELKLRVTGRIWKEQ 311


>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5
           OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2
          Length = 309

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGD+KELKLRVTGRIWKEQ
Sbjct: 272 LFFSGGDKKELKLRVTGRIWKEQ 294


>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4
           OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1
          Length = 327

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTG+IWKEQ
Sbjct: 290 LFFSGGDRKELKLRVTGKIWKEQ 312


>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2
           OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1
          Length = 308

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           ++FSGGDR+ELKLRVTGRIWKE+
Sbjct: 286 LYFSGGDRQELKLRVTGRIWKEE 308


>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1
           OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1
          Length = 305

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           ++FSG D++ELKLRVTGRIWKE+
Sbjct: 283 LYFSGSDKEELKLRVTGRIWKEE 305


>sp|P26674|STE6_SCHPO Protein ste6 OS=Schizosaccharomyces pombe
           GN=ste6 PE=2 SV=1
          Length = 911

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 150 KEH*WSSRSATCWLMLYTIQQQSLLHSLLFPYPSCHSKLQ 31
           K + + S+   C+LM  T  +  L+ +LLF + SC+ K++
Sbjct: 449 KTNWFDSKGLVCYLMKQTSPEPLLIRNLLFSFWSCNGKIE 488
tr_hit_id Q9SPH3
Definition tr|Q9SPH3|Q9SPH3_GOSHI SINAH1 protein OS=Gossypium hirsutum
Align length 23
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944573|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_I01, 5'
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SPH3|Q9SPH3_GOSHI SINAH1 protein OS=Gossypium hirsutum PE=2...    50   6e-05
tr|Q676Y5|Q676Y5_HYAOR SINA (Fragment) OS=Hyacinthus orientalis ...    50   6e-05
tr|Q60EU0|Q60EU0_ORYSJ Os05g0238200 protein OS=Oryza sativa subs...    50   6e-05
tr|B8Q8B9|B8Q8B9_ORYSI SKIP interacting protein 33 OS=Oryza sati...    50   6e-05
tr|B7ZZQ3|B7ZZQ3_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B7FIX0|B7FIX0_MEDTR Putative uncharacterized protein OS=Medic...    50   6e-05
tr|B7FII4|B7FII4_MEDTR Putative uncharacterized protein OS=Medic...    50   6e-05
tr|B7FFI9|B7FFI9_MEDTR Putative uncharacterized protein OS=Medic...    50   6e-05
tr|B6TPS9|B6TPS9_MAIZE Ubiquitin ligase SINAT3 OS=Zea mays PE=2 ...    50   6e-05
tr|B6SRI2|B6SRI2_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B4FLL3|B4FLL3_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B4FCG7|B4FCG7_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B3F0L3|B3F0L3_MAIZE SINA6 OS=Zea mays PE=2 SV=1                     50   6e-05
tr|B3F0L2|B3F0L2_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|A9SSC3|A9SSC3_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9RY27|A9RY27_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9PF22|A9PF22_POPTR Putative uncharacterized protein OS=Popul...    50   6e-05
tr|A9PEZ7|A9PEZ7_POPTR Putative uncharacterized protein OS=Popul...    50   6e-05
tr|A9PB73|A9PB73_POPTR Putative uncharacterized protein OS=Popul...    50   6e-05
tr|A9NX30|A9NX30_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|A8W465|A8W465_MEDTR SINA6 OS=Medicago truncatula PE=2 SV=1          50   6e-05
tr|A8W464|A8W464_MEDTR Putative uncharacterized protein OS=Medic...    50   6e-05
tr|A8W463|A8W463_MEDTR SINA4 OS=Medicago truncatula PE=2 SV=1          50   6e-05
tr|A8W462|A8W462_MEDTR SINA3 OS=Medicago truncatula PE=2 SV=1          50   6e-05
tr|A8W461|A8W461_MEDTR SINA2 OS=Medicago truncatula PE=2 SV=1          50   6e-05
tr|A8W460|A8W460_MEDTR SINA1 OS=Medicago truncatula PE=2 SV=1          50   6e-05
tr|A7QU80|A7QU80_VITVI Chromosome chr2 scaffold_176, whole genom...    50   6e-05
tr|A7QF35|A7QF35_VITVI Chromosome chr16 scaffold_86, whole genom...    50   6e-05
tr|A5CAJ5|A5CAJ5_VITVI Putative uncharacterized protein (Chromos...    50   6e-05
tr|A5BYR4|A5BYR4_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05

>tr|Q9SPH3|Q9SPH3_GOSHI SINAH1 protein OS=Gossypium hirsutum PE=2
           SV=1
          Length = 336

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 303 LFFSGGDRKELKLRVTGRIWKEQ 325


>tr|Q676Y5|Q676Y5_HYAOR SINA (Fragment) OS=Hyacinthus orientalis
           GN=SINA PE=2 SV=1
          Length = 108

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 86  LFFSGGDRKELKLRVTGRIWKEQ 108


>tr|Q60EU0|Q60EU0_ORYSJ Os05g0238200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1122_B08.8 PE=4 SV=1
          Length = 361

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 326 LFFSGGDRKELKLRVTGRIWKEQ 348


>tr|B8Q8B9|B8Q8B9_ORYSI SKIP interacting protein 33 OS=Oryza sativa
           subsp. indica GN=SIP33 PE=2 SV=1
          Length = 361

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 326 LFFSGGDRKELKLRVTGRIWKEQ 348


>tr|B7ZZQ3|B7ZZQ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 347

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 311 LFFSGGDRKELKLRVTGRIWKEQ 333


>tr|B7FIX0|B7FIX0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 335

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 297 LFFSGGDRKELKLRVTGRIWKEQ 319


>tr|B7FII4|B7FII4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 323

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 290 LFFSGGDRKELKLRVTGRIWKEQ 312


>tr|B7FFI9|B7FFI9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 144

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 111 LFFSGGDRKELKLRVTGRIWKEQ 133


>tr|B6TPS9|B6TPS9_MAIZE Ubiquitin ligase SINAT3 OS=Zea mays PE=2
           SV=1
          Length = 349

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 314 LFFSGGDRKELKLRVTGRIWKEQ 336


>tr|B6SRI2|B6SRI2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 302

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   VFFSGGDRKELKLRVTGRIWKEQ 69
           +FFSGGDRKELKLRVTGRIWKEQ
Sbjct: 280 LFFSGGDRKELKLRVTGRIWKEQ 302