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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944580
Clone id YMU02A01NGRL0006_I11
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_I11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATATTTGTTAGCTTTTATGCAGGCGCCATGGAACTCGCGTTGTCTCGAACCATCTCTTTA
CCTACGCAGCTTCGTCTAGGACTGTCTCTGACCTTGCATCATCGCCCCGTTATCTCCTGC
CTCTCTCACACGATTAACTTCTCTCTTTCTAGCCGAAGGAGGGTCCCTCTTACGACACAT
ATAACAGGTAATTGGTCGAAGAGTTGTGCTCCTCCTGTATTTTTGGTATCCAAAGCTACT
GGTAATAGTGCCATCGATAGCAGTGTCTCAACAGGAGATTTAACTGGCTTGTATAAGAAA
GTGCTTTTACCCATCATCGATCGCAATCCGTATTTATCAGAGGCAACCAGGCTGCCGCAA
CCACCACTGCCTTGGCCAAAAAGTATGGAGCTGAGATCACAGTAGTTGTAATTGATGAGA
ACACCAAGGAGTCAATAGATGACCATGACTTAAGAATCAAGAACATACGTTGGCATCTTG
CTCAAGGTGGCTTTGAAGAGTTTGGCCTGTTGGAAAGCCTTGGTGAAGGAAAGCTGCCGG
CAGCCATCATTGGAGAGATTGCTGATGATTTGAGCCTTGATTTGGTTGTTTTGAGCATGG
AAAGCATTC
■■Homology search results ■■ -
sp_hit_id Q87R69
Definition sp|Q87R69|MEND_VIBPA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Vibrio parahaemolyticus
Align length 75
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944580|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_I11, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q87R69|MEND_VIBPA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    32   3.3  
sp|A8GHR0|MDTC_SERP5 Multidrug resistance protein mdtC OS=Serrat...    31   4.3  
sp|Q3SRY9|RS6_NITWN 30S ribosomal protein S6 OS=Nitrobacter wino...    31   4.4  
sp|O57774|DTDA_PYRHO D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus...    31   5.7  
sp|Q75D53|CAF17_ASHGO Putative transferase CAF17, mitochondrial ...    30   7.5  
sp|P58852|DTDA_PYRFU D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus...    30   9.7  

>sp|Q87R69|MEND_VIBPA
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Vibrio parahaemolyticus GN=menD
           PE=3 SV=1
          Length = 571

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -2

Query: 392 SSILFGQGSGGCGSLVASDKYGLRSMMGKSTFLYKPVKSPVETLLSMAL-----LPVALD 228
           + +   +G+ G   L A+   G++   GK   +Y    S +  L S+AL     LP  L 
Sbjct: 420 TEVFTNRGASGIDGLFATAS-GVQRSRGKPLLMYIGDTSALYDLNSLALFSRNDLPSVLV 478

Query: 227 TKNTGGAQLFDQLPV 183
             N  G  +FD LPV
Sbjct: 479 VTNNDGGAIFDMLPV 493


>sp|A8GHR0|MDTC_SERP5 Multidrug resistance protein mdtC OS=Serratia
            proteamaculans (strain 568) GN=mdtC PE=3 SV=1
          Length = 1026

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
 Frame = -2

Query: 506  AKLFKATLSKMPTYVLDS*VMVIY*LLGVLINYNYCDLSSILFGQGSGGCGSLVASDKYG 327
            A++F+ TL K    ++ + +  +Y +LG+L   +Y    +IL    S G G+L+A + +G
Sbjct: 842  AQVFQETL-KSQLLLIAAAIATVYIVLGILYE-SYIHPLTILSTLPSAGVGALLALELFG 899

Query: 326  ----LRSMMGKSTFLYKPVKSPVETLLSMALLPVALDTKNTGGAQLFDQLPVICVVR 168
                L +++G    +    K+ +       ++  ALD +  GG    D +   C++R
Sbjct: 900  APFSLIALIGIMLLIGIVKKNAI------MMVDFALDAQRNGGISAHDAIFQACLLR 950


>sp|Q3SRY9|RS6_NITWN 30S ribosomal protein S6 OS=Nitrobacter
           winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsF PE=3
           SV=1
          Length = 139

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 258 IDG--TITSSFGYQKYRRSTTLRPITCYMCRKRDPPSARKREVNRVREAGDNGAMMQGQR 85
           IDG  TI +    Q+      +R +T  +    D PSA  R+ +R RE  D G   +G R
Sbjct: 65  IDGPATIVNEIERQERIHEDVIRYLTVRVDEHEDGPSAMMRKADRDRERDDRGGGFRGDR 124


>sp|O57774|DTDA_PYRHO D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus
           horikoshii GN=dtdA PE=1 SV=1
          Length = 274

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 12/20 (60%), Positives = 18/20 (90%), Gaps = 1/20 (5%)
 Frame = +1

Query: 148 SSRRRVP-LTTHITGNWSKS 204
           SS++++P LTTH+TGNW K+
Sbjct: 81  SSKQKLPALTTHVTGNWGKA 100


>sp|Q75D53|CAF17_ASHGO Putative transferase CAF17, mitochondrial
           OS=Ashbya gossypii GN=CAF17 PE=3 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 175 THITGNWSKSCAPPVFLVSKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEATRL 354
           TH TG   K CAP +        NSA   +++T     LY   ++P    +P  + +   
Sbjct: 340 THATGVLRKRCAPVI------VSNSASLDTLATSSRLDLYTDYVIPAASTSPSPTNSPFA 393

Query: 355 PQPPLPWPK 381
            Q P P  K
Sbjct: 394 SQNPRPRKK 402


>sp|P58852|DTDA_PYRFU D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus
           furiosus GN=dtdA PE=3 SV=1
          Length = 270

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +1

Query: 148 SSRRRVP-LTTHITGNWSKS 204
           SS +++P LTTH+TGNW K+
Sbjct: 81  SSAKKLPSLTTHVTGNWGKA 100
tr_hit_id A9TFM3
Definition tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 61
Score (bit) 65.9
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944580|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_I11, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment) OS=Physcomit...    66   1e-14
tr|Q9FKX3|Q9FKX3_ARATH Genomic DNA, chromosome 5, TAC clone:K2A1...    60   2e-14
tr|Q8GWN7|Q8GWN7_ARATH Putative uncharacterized protein At5g6609...    60   1e-13
tr|A7R115|A7R115_VITVI Chromosome chr4 scaffold_333, whole genom...    61   7e-13
tr|Q7XJ15|Q7XJ15_ORYSJ Os09g0541700 protein OS=Oryza sativa subs...    60   9e-13
tr|A2Z3L9|A2Z3L9_ORYSI Putative uncharacterized protein OS=Oryza...    60   9e-13
tr|B4FG13|B4FG13_MAIZE Putative uncharacterized protein OS=Zea m...    62   2e-08
tr|A8JIU3|A8JIU3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   0.003
tr|B7G082|B7G082_PHATR Predicted protein (Fragment) OS=Phaeodact...    37   1.2  
tr|A9VAA3|A9VAA3_MONBE Predicted protein OS=Monosiga brevicollis...    35   3.4  
tr|B4K6E6|B4K6E6_DROMO GI24701 OS=Drosophila mojavensis GN=GI247...    33   9.8  

>tr|A9TFM3|A9TFM3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_144824 PE=4 SV=1
          Length = 154

 Score = 65.9 bits (159), Expect(2) = 1e-14
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +3

Query: 381 KYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGEI 560
           K+GAEITVVVIDE++ ES +DHD R+KNIRWHL++                 PA +IGE+
Sbjct: 56  KFGAEITVVVIDEDSSESKEDHDTRMKNIRWHLSEGGFAEFKLMERIGEGKRPAVVIGEV 115

Query: 561 A 563
           A
Sbjct: 116 A 116



 Score = 37.0 bits (84), Expect(2) = 1e-14
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query: 229 SKATGNSAIDSSVSTGDLTGLYKKVLLPII-DRNPYLSEATR 351
           ++A   SA D  V+   +T  +K VLLPII DRNPYLSEATR
Sbjct: 5   AQAQSQSASDG-VAVAGVTN-FKSVLLPIIMDRNPYLSEATR 44


>tr|Q9FKX3|Q9FKX3_ARATH Genomic DNA, chromosome 5, TAC clone:K2A18
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At5g66090 PE=2 SV=1
          Length = 210

 Score = 60.5 bits (145), Expect(2) = 2e-14
 Identities = 31/77 (40%), Positives = 41/77 (53%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 557
           KKYGA+ITVVVIDE  +ES  +H+ ++ NIRWHL++                   AIIGE
Sbjct: 111 KKYGADITVVVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGKKATAIIGE 170

Query: 558 IAXXXXXXXXXXXMESI 608
           +A           ME+I
Sbjct: 171 VADELKMELVVMSMEAI 187



 Score = 41.2 bits (95), Expect(2) = 2e-14
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +1

Query: 229 SKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEATR 351
           ++A    A  S V  GD     K +LLP+IDRNPYLSE TR
Sbjct: 60  AQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSEGTR 100


>tr|Q8GWN7|Q8GWN7_ARATH Putative uncharacterized protein
           At5g66090/K2A18_17 OS=Arabidopsis thaliana
           GN=At5g66090/K2A18_17 PE=2 SV=1
          Length = 210

 Score = 60.5 bits (145), Expect(2) = 1e-13
 Identities = 31/77 (40%), Positives = 41/77 (53%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 557
           KKYGA+ITVVVIDE  +ES  +H+ ++ NIRWHL++                   AIIGE
Sbjct: 111 KKYGADITVVVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGKKATAIIGE 170

Query: 558 IAXXXXXXXXXXXMESI 608
           +A           ME+I
Sbjct: 171 VADELKMELVVMSMEAI 187



 Score = 38.5 bits (88), Expect(2) = 1e-13
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +1

Query: 229 SKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEATR 351
           ++A    A  S V  GD     K +LLP+IDRNPYLS  TR
Sbjct: 60  AQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSGGTR 100


>tr|A7R115|A7R115_VITVI Chromosome chr4 scaffold_333, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00011736001
           PE=4 SV=1
          Length = 211

 Score = 61.2 bits (147), Expect(2) = 7e-13
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQ-XXXXXXXXXXXXXXXXXPAAIIG 554
           KKYGA+ITVVVIDE  KESI +HD ++ +IRWHL++                  P AIIG
Sbjct: 111 KKYGADITVVVIDEKQKESIPEHDTQLSSIRWHLSEGGFQEFRVLERLGEGSSKPTAIIG 170

Query: 555 EIAXXXXXXXXXXXMESI 608
           E+A           ME+I
Sbjct: 171 EVADDLNLDLVVLSMEAI 188



 Score = 35.4 bits (80), Expect(2) = 7e-13
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = +1

Query: 106 PVISCLSHTINFSLSSRR--RVPLTTHITGNWSKSCAPPVFLVSKATGNSAI----DSSV 267
           P IS L  + + S SS     +PL++  +   SK+    +F      G+ A     DS V
Sbjct: 12  PKISILPSSSSSSSSSPSIFSLPLSSSSSPLCSKTSKLSIFPGLLKLGHRAKSKPQDSEV 71

Query: 268 S-TGDLTGLYKKVLLPIIDRNPYLSEATR 351
           +   +    +K +LLP+ DRNPYLSE TR
Sbjct: 72  NLAAEAFTSFKHLLLPVTDRNPYLSEGTR 100


>tr|Q7XJ15|Q7XJ15_ORYSJ Os09g0541700 protein OS=Oryza sativa subsp.
           japonica GN=P0478E02.11 PE=2 SV=1
          Length = 194

 Score = 60.5 bits (145), Expect(2) = 9e-13
 Identities = 31/77 (40%), Positives = 40/77 (51%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 557
           KKYGA ITVVVID+  KE   +HD ++ +IRWHL++                 P AIIGE
Sbjct: 95  KKYGANITVVVIDDKPKEEFPEHDTQMSSIRWHLSEGGFTEFGLMERLGEGKKPTAIIGE 154

Query: 558 IAXXXXXXXXXXXMESI 608
           +A           ME+I
Sbjct: 155 VADELELDLVVLSMEAI 171



 Score = 35.8 bits (81), Expect(2) = 9e-13
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 SVSTGDLTGLYKKVLLPIIDRNPYLSEATR 351
           S    D     K VLLP+ DRNPYLSE TR
Sbjct: 55  SALAADAFAQVKHVLLPVTDRNPYLSEGTR 84


>tr|A2Z3L9|A2Z3L9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32227 PE=4 SV=1
          Length = 194

 Score = 60.5 bits (145), Expect(2) = 9e-13
 Identities = 31/77 (40%), Positives = 40/77 (51%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 557
           KKYGA ITVVVID+  KE   +HD ++ +IRWHL++                 P AIIGE
Sbjct: 95  KKYGANITVVVIDDKPKEEFPEHDTQMSSIRWHLSEGGFTEFGLMERLGEGKKPTAIIGE 154

Query: 558 IAXXXXXXXXXXXMESI 608
           +A           ME+I
Sbjct: 155 VADELELDLVVLSMEAI 171



 Score = 35.8 bits (81), Expect(2) = 9e-13
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 SVSTGDLTGLYKKVLLPIIDRNPYLSEATR 351
           S    D     K VLLP+ DRNPYLSE TR
Sbjct: 55  SALAADAFAQVKHVLLPVTDRNPYLSEGTR 84


>tr|B4FG13|B4FG13_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/77 (40%), Positives = 42/77 (54%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHLAQXXXXXXXXXXXXXXXXXPAAIIGE 557
           KKYGA+ITVVVID+  KES+ +HD ++ +IRWHL++                 P  IIGE
Sbjct: 39  KKYGADITVVVIDDKPKESVPEHDTQMSSIRWHLSEGGFSEFRLMERLGEGQKPTVIIGE 98

Query: 558 IAXXXXXXXXXXXMESI 608
           +A           ME+I
Sbjct: 99  VADEWDLDLVVLSMEAI 115


>tr|A8JIU3|A8JIU3_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_154979 PE=4
           SV=1
          Length = 133

 Score = 33.1 bits (74), Expect(2) = 0.003
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +1

Query: 208 APPVFLVSKATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNPYLSEATR 351
           AP   +V +A    A   ++++ +LT  Y ++LL I+D NPYLS+ +R
Sbjct: 21  APRRSVVPRAAAPDAKAPAMASTELT--YNRLLLTILDANPYLSDGSR 66



 Score = 30.8 bits (68), Expect(2) = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 378 KKYGAEITVVVIDENTKESIDDHDLRIKNIRWHL 479
           K Y +++TV+V+DE   ++ D    RI++I WHL
Sbjct: 77  KTYSSKVTVLVVDEPGTDNTDPAK-RIESITWHL 109


>tr|B7G082|B7G082_PHATR Predicted protein (Fragment) OS=Phaeodactylum
            tricornutum CCAP 1055/1 GN=PHATRDRAFT_36043 PE=4 SV=1
          Length = 3911

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +1

Query: 13   FYAGAMELALSRTISLPTQLRLGLSLTLHHRPVISCLSHTINFSLSSRRRVPLTTHITGN 192
            F  G    A +RT      L  G+ L     P+ S +S  +   + + RR  +TT   GN
Sbjct: 2852 FPGGPSSAASARTQQALHPLLCGIDLP----PMNSLVSDLLPHGIRATRRGEMTTRRPGN 2907

Query: 193  WSKSC-APPVFLVSKATGNSAIDSSVSTGDLTGL 291
            WS S  A   +L+S + GN    S    G+ TGL
Sbjct: 2908 WSNSSFAQGNYLMSTSNGNIVRSSPPLPGNHTGL 2941


>tr|A9VAA3|A9VAA3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=34217 PE=4 SV=1
          Length = 948

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
 Frame = +1

Query: 25  AMELALSRTISLPTQLRLGLSLTLHHRPVISCLSHTINFSLSSRRRVPLTTHITGNWSKS 204
           ++ L+LS+T+SL   L L LSL+L     +S  S +++ SLS    V     +     KS
Sbjct: 214 SLSLSLSQTLSLSLSLSLSLSLSLS----LSSFSLSLSHSLSLNSLV-----LEQERDKS 264

Query: 205 CAPPVFLVSK---ATGNSAIDSSVSTGDLTGLYKKVLLPIIDRNP 330
             P V +  K   A G+    +  + GD  G Y  +L  ++ RNP
Sbjct: 265 TLPRVCVSKKKDMAVGSVVALAVEAAGDSEGQYCALLSWLVVRNP 309