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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944604
Clone id YMU02A01NGRL0006_J16
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ACTCCCTGCTGACAACAGTAATTTTCAAATGCATGATTATGCCAACCAGAGGATTCCCTC
TGAGGATGCAATTAATCCATTTGCTACAGTGGTTCCAAGCAACAATACTGCAGAGTCAGC
TCCATATTCTGACCATGATGCTCTCTCTCAAAGCAGCTTGGATTTGGGACATCTAGATAA
TGTAGACGACTTACCTGCACAAAGGATGCATGTGTCTGCACCAGAAGAATCAGTCGTGGC
AGTTGCAGACAGCGATGTATTGAACCTTTGCTTTCAGCTTCTTAAGTTCCTGTTAATTAT
ACTGTAGCATAGTATTTCCGGACACGTCCGATTGGGGAACCATACTCTTGGACGTGTCCG
AGTTTGATTGACGCATTATTGGAGTTCGGACTTTACTGTCTTAAGGCTCCATTTTTTGCC
TTGAGGCTTCATGTTTTGGCCTCTTCATTTTGCTCTTTGCCTAGATTCTAAAATTTCTAT
GGCGATTCACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26371
Definition sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo sapiens
Align length 89
Score (bit) 33.5
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944604|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J16, 5'
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo sap...    33   0.55 
sp|Q6L8H1|KRA54_HUMAN Keratin-associated protein 5-4 OS=Homo sap...    32   1.6  
sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo sap...    31   3.5  
sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus musc...    30   4.6  
sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo sap...    30   6.0  
sp|Q9P5N1|YH84_SCHPO Putative cell-type specific agglutination p...    30   7.9  
sp|Q9Z287|KR121_MOUSE Keratin-associated protein 12-1 OS=Mus mus...    30   7.9  

>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo
           sapiens GN=KRTAP5-9 PE=2 SV=1
          Length = 169

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +1

Query: 40  CQPEDSL*GCN*SICYSGSKQQYCRVSSIF*P*CSLSKQLGFGTSR*CRRLTCTKDACVC 219
           C+P     GC  S C     + YC   S   P CS S   G G+S  C + +C K  C  
Sbjct: 83  CKPCCCSSGCGSSCCQCSCCKPYCSQCSCCKPCCSSS---GRGSS--CCQSSCCKPCC-S 136

Query: 220 TRRISRGSCRQRCIEPLLSAS--*VPVNY 300
           +       C+  C +P  S S   VPV Y
Sbjct: 137 SSGCGSSCCQSSCCKPCCSQSRCCVPVCY 165


>sp|Q6L8H1|KRA54_HUMAN Keratin-associated protein 5-4 OS=Homo
           sapiens GN=KRTAP5-4 PE=2 SV=1
          Length = 288

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +1

Query: 40  CQPEDSL*GCN*SICYSGSKQQYCRVSSIF*P*CSLSKQLGFGTSR*CRRLTCTKDACVC 219
           C+P  S  GC  S C S   + YC  SS   P CS S   G G+S       C + +C C
Sbjct: 221 CKPCCSSSGCGSSCCQSSCCKPYCCQSSCCKPCCSSS---GCGSS-------CCQSSC-C 269

Query: 220 TRRISRGSC 246
               S+ SC
Sbjct: 270 NPCCSQSSC 278


>sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo
           sapiens GN=KRTAP4-5 PE=2 SV=1
          Length = 186

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/66 (28%), Positives = 24/66 (36%)
 Frame = +1

Query: 67  CN*SICYSGSKQQYCRVSSIF*P*CSLSKQLGFGTSR*CRRLTCTKDACVCTRRISRGSC 246
           C+ S C S   + YC  SS   P C             C R TC +  C C        C
Sbjct: 56  CHPSCCISSCCRPYCCESSCCRPCCCRPSCC----QTTCCRTTCCRTTCCCPSCCVSSCC 111

Query: 247 RQRCIE 264
           R +C +
Sbjct: 112 RPQCCQ 117


>sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus
           musculus GN=Krtap5-4 PE=2 SV=1
          Length = 223

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +1

Query: 64  GCN*SICYSGSKQQYCRVSSIF*P*CSLSKQLGFGTSR*CRRLTCTKDACVCTRRISRGS 243
           GC  S C S   +  C  SS   P CS     G G+S  C + +C K  C  +       
Sbjct: 97  GCGSSCCQSSCCKPCCCQSSCCKPCCS----SGCGSS--CCQSSCCKPCCCQSSCCKPCC 150

Query: 244 CRQRCIEPLLSA 279
           C+  C +P  S+
Sbjct: 151 CQSSCCKPCCSS 162


>sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo
           sapiens GN=KRTAP5-3 PE=2 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
 Frame = +1

Query: 64  GCN*SICYSGSKQQYCRVSSIF*P*CSLSK-------QLGFGTSR*CRRLTCTKDA---- 210
           GC  S C S   +  C  SS   P CS S          G G+S  C + +C K      
Sbjct: 140 GCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGCGSS--CCQSSCCKPCCSQS 197

Query: 211 -----CVCTRRISRGSCRQRCIEPLLSAS 282
                C C+       C+  C +P  S S
Sbjct: 198 SCCKPCCCSSGCGSSCCQSSCCKPCSSQS 226


>sp|Q9P5N1|YH84_SCHPO Putative cell-type specific agglutination
           protein C359.04c OS=Schizosaccharomyces pombe
           GN=SPBC359.04c PE=2 SV=1
          Length = 358

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 38  YANQRIPSEDAINPFATVVPSNNTAESAPYSDHDALSQSSL 160
           Y N  +P    I P + V  ++NT+E+ PY+   +LS SS+
Sbjct: 47  YTNGPVPGTTTIYPTSNV--ASNTSENYPYTGSKSLSSSSI 85


>sp|Q9Z287|KR121_MOUSE Keratin-associated protein 12-1 OS=Mus
           musculus GN=Krtap12-1 PE=2 SV=1
          Length = 130

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 25/82 (30%), Positives = 30/82 (36%)
 Frame = +1

Query: 64  GCN*SICYSGSKQQYCRVSSIF*P*CSLSKQLGFGTSR*CRRLTCTKDACVCTRRISRGS 243
           GC  S C S S Q  C VSS     C +S               C    CV +      S
Sbjct: 9   GCQPSCCVSSSCQPSCCVSSPCQASCFVSS-------------PCQPSCCVSS------S 49

Query: 244 CRQRCIEPLLSAS*VPVNYTVA 309
           C+  C  P +    +PV Y VA
Sbjct: 50  CQSACCRPAIC---IPVRYQVA 68
tr_hit_id A8Q8M9
Definition tr|A8Q8M9|A8Q8M9_BRUMA Bromodomain containing protein OS=Brugia malayi
Align length 65
Score (bit) 33.9
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944604|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J16, 5'
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8Q8M9|A8Q8M9_BRUMA Bromodomain containing protein OS=Brugia ...    34   4.3  
tr|B6HUP6|B6HUP6_PENCH Pc22g22740 protein OS=Penicillium chrysog...    33   5.6  

>tr|A8Q8M9|A8Q8M9_BRUMA Bromodomain containing protein OS=Brugia
            malayi GN=Bm1_46290 PE=4 SV=1
          Length = 1592

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 181  CRRLTCTKDACVCTRRISRGSCRQRCIEPLLSAS*VPVNYTVA*YFRTRPIGEPYSWTCP 360
            C +  C K  C+   + +R + +   +EP++  S     Y  + + RT  + +P  WTCP
Sbjct: 1338 CVQRACRKVLCLLCAKWNRPNSQP--LEPIIVCSKCYNGYHASCFDRTPTLNDPKQWTCP 1395

Query: 361  SLIDA 375
              ++A
Sbjct: 1396 GCLNA 1400


>tr|B6HUP6|B6HUP6_PENCH Pc22g22740 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc22g22740 PE=4 SV=1
          Length = 466

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 493 VVNRHRNFRI*AKSKMKRPKHEASRQKMEP*DSKVRTPIMRQSNSD 356
           ++  H N RI  K K KRP+HE SR+  +P + +  T  +  +  D
Sbjct: 204 LLQSHANKRIAHKKKHKRPRHEPSREDQDPSEQQPVTATINMTPQD 249