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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944605
Clone id YMU02A01NGRL0006_J17
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AATCAATGGGGTTTATGGATCGTGAGCTGAATGCTGTTCTCTTGAGCAAGAATGACGGGA
ATGTGCAACTTGTTCTGGACGATCTTTTAGTTGCAGCTGGATGGGATGGGGCGTTTGAGG
ATCTCCGAGAGATGGGATTCACTGATCAGGCGACAAATGTGAGATTGCTTTTGAAGCACA
AGGGGAGTGTCAAAGCTGCAGTGAGAGATTTGGTGCAGAAGGGGAAGCAGAAAGCTTAAG
TTGCAAAGGCTTGCGATGTATCAACTACTTGAATAAAGGATGCTGCAGTAGCAATATCCA
GTAGCTGAGGATTGTCCGAGTTTTAGCTAGTAGTTGGCATGGAATTGTAACTGGGTTTGG
CTTTGTGAGCTGACATGACATTGGGTCTCTGCCCTTTTCTATGGTTATTGTCCGTTTTGT
AAATTTGTCCTTGTTAAAAAAGGCTTTTGTTTTTTTCTTTGAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id Q9YHE8
Definition sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio rerio
Align length 23
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J17, 5'
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio r...    30   3.8  
sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270 OS=Ar...    30   3.8  
sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norveg...    30   5.0  
sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio r...    30   6.5  
sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculu...    30   6.5  
sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapien...    30   6.5  
sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo sap...    29   8.5  

>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio
           rerio GN=tcf7l1a PE=2 SV=1
          Length = 560

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 162 SHLSPDQ*IPSLGDPQTPHPIQL 94
           SHLSP+   P  G P+TPHP +L
Sbjct: 191 SHLSPEILDPKTGIPRTPHPSEL 213


>sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270
           OS=Arabidopsis thaliana GN=At2g43270 PE=2 SV=1
          Length = 208

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 149 GDKCEIAFEAQGECQSCSERFGAEGEAESLSCKGLRCI 262
           GD+ E+ FE + E Q        +    SL+C+GL CI
Sbjct: 57  GDRTELGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCI 94


>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus
            GN=Nbr1 PE=1 SV=1
          Length = 983

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 123  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 941  LFEMGFCDRQLNLRLLRKHNHNILQVVTEL 970


>sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio
           rerio GN=tcf7l1b PE=2 SV=1
          Length = 551

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 162 SHLSPDQ*IPSLGDPQTPHPIQL 94
           +HLSP+   P  G P+TPHP +L
Sbjct: 189 AHLSPEILDPKTGIPRTPHPAEL 211


>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus
            GN=Nbr1 PE=2 SV=1
          Length = 988

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 123  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 946  LFEMGFCDRQLNLRLLRKHNYNILQVVTEL 975


>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens
            GN=NBR1 PE=1 SV=2
          Length = 966

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 123  LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
            L EMGF D+  N+RLL KH  ++   V +L
Sbjct: 924  LFEMGFCDRQLNLRLLKKHNYNILQVVTEL 953


>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo
           sapiens GN=KRTAP5-5 PE=2 SV=2
          Length = 237

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
 Frame = +2

Query: 17  GS*AECCSLEQE*RECATCSGRSFSCSWMGWGV*GSPRDGIH*SGDKCEIAFEAQGECQS 196
           GS   C S       C +C G    C     G  G  + G       C     ++G C S
Sbjct: 94  GSKRGCVSCGVSKGACGSCGGSKGGC-----GSCGGSKGG-------CGSCGGSKGGCGS 141

Query: 197 CSERFGAEGE---AESLSCKGLRCINYLNKGCCSSN 295
           C    G  G    ++S  CK   C +     CC S+
Sbjct: 142 CGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSS 177
tr_hit_id A9SHX9
Definition tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 70
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J17, 5'
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g2469...    47   5e-04
tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g2469...    47   5e-04
tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum ...    43   0.007
tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Popul...    43   0.009
tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa su...    41   0.026
tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subs...    41   0.026
tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.026
tr|B6SNC6|B6SNC6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.075
tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosu...    39   0.098
tr|A7PCR7|A7PCR7_VITVI Chromosome chr17 scaffold_12, whole genom...    37   0.49 
tr|Q4UIY1|Q4UIY1_THEAN Ubiquitin-related chaperonin, putative OS...    36   1.1  
tr|Q4N6N3|Q4N6N3_THEPA Putative uncharacterized protein OS=Theil...    36   1.1  
tr|Q9SII9|Q9SII9_ARATH Putative ubiquitin-like protein OS=Arabid...    35   1.4  
tr|Q9SII8|Q9SII8_ARATH Putative ubiquitin-like protein OS=Arabid...    35   1.4  
tr|Q94C51|Q94C51_ARATH Putative ubiquitin protein OS=Arabidopsis...    35   1.4  
tr|B4K524|B4K524_DROMO GI24027 OS=Drosophila mojavensis GN=GI240...    29   3.2  
tr|Q5ALM2|Q5ALM2_CANAL Putative uncharacterized protein SAC3 OS=...    34   4.1  
tr|Q4HTC5|Q4HTC5_CAMUP Alginate O-acetylation protein (AlgI) OS=...    33   7.0  
tr|A4BRQ4|A4BRQ4_9GAMM Putative uncharacterized protein OS=Nitro...    33   9.2  
tr|Q9FWF5|Q9FWF5_ORYSA Putative ubiquitin protein OS=Oryza sativ...    33   9.2  
tr|Q7XCL2|Q7XCL2_ORYSJ Os10g0542200 protein OS=Oryza sativa subs...    33   9.2  
tr|A9T265|A9T265_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.2  
tr|A3C6Z0|A3C6Z0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|A2Z9V2|A2Z9V2_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212537 PE=4 SV=1
          Length = 732

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   SMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHK 182
           SMGF  R+ N +LL KN                     E+L EMGF D   N +L+LKH 
Sbjct: 650 SMGFKQRDFNQMLLKKNEYDLQRTLDDLVMAAERESLLEELEEMGFYDTNLNRQLMLKHN 709

Query: 183 GSVKAAVRDL 212
           GSVK  V++L
Sbjct: 710 GSVKRVVKEL 719


>tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g24690
           OS=Arabidopsis thaliana GN=F22K18.110 PE=2 SV=1
          Length = 704

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/69 (37%), Positives = 33/69 (47%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF + +LN  +L  N                     E+L+EMGF D  TN RLL K+ G
Sbjct: 629 MGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNG 688

Query: 186 SVKAAVRDL 212
           S+K  V DL
Sbjct: 689 SIKGVVMDL 697


>tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g24690
           OS=Arabidopsis thaliana GN=At4g24690 PE=4 SV=1
          Length = 83

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/69 (37%), Positives = 33/69 (47%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF + +LN  +L  N                     E+L+EMGF D  TN RLL K+ G
Sbjct: 8   MGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNG 67

Query: 186 SVKAAVRDL 212
           S+K  V DL
Sbjct: 68  SIKGVVMDL 76


>tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122833 PE=4 SV=1
          Length = 89

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 3   SMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHK 182
           SMGF  R++N  +L KN                     E+L EMGF D   N  L+ K+ 
Sbjct: 7   SMGFKQRDVNQEVLKKNGNDLQRTLDDLVMAVEWDPMLEELEEMGFYDTDMNRLLMFKNN 66

Query: 183 GSVKAAVRDL 212
           GS+K  V++L
Sbjct: 67  GSIKRVVKEL 76


>tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum
            aestivum GN=UBA PE=2 SV=1
          Length = 870

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 25/69 (36%), Positives = 32/69 (46%)
 Frame = +3

Query: 6    MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
            MGF   +LN  +L +N                      +L EMGF D+ TN  LL K+ G
Sbjct: 794  MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELNEMGFDDRETNKELLAKNGG 853

Query: 186  SVKAAVRDL 212
            S+K AV DL
Sbjct: 854  SIKRAVMDL 862


>tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 324

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF   +LN  +L +N                     E+L+EMGF+D+  N +LL K+ G
Sbjct: 250 MGFKQVDLNKEILRRNEYDLEQSVDDLCGFAEWDPILEELQEMGFSDKEMNKKLLKKNNG 309

Query: 186 SVKAAVRDL 212
           S++  V D+
Sbjct: 310 SIRGVVMDI 318


>tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa
           subsp. japonica GN=ta4 PE=2 SV=1
          Length = 208

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF   +LN  +L +N                     E+L+EMGF D   N  +L K+ G
Sbjct: 132 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 191

Query: 186 SVKAAVRDL 212
           S+K AV DL
Sbjct: 192 SIKRAVMDL 200


>tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1067_B01.6-1 PE=2 SV=1
          Length = 845

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF   +LN  +L +N                     E+L+EMGF D   N  +L K+ G
Sbjct: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 828

Query: 186 SVKAAVRDL 212
           S+K AV DL
Sbjct: 829 SIKRAVMDL 837


>tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07886 PE=4 SV=1
          Length = 845

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF   +LN  +L +N                     E+L+EMGF D   N  +L K+ G
Sbjct: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 828

Query: 186 SVKAAVRDL 212
           S+K AV DL
Sbjct: 829 SIKRAVMDL 837


>tr|B6SNC6|B6SNC6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 77

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +3

Query: 6   MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
           MGF   +LN  +L +N                      +L EMGF D   N  LL K++G
Sbjct: 1   MGFRQVDLNKEILRQNNYNLEQSVDDLCGVNEWDPLLAELEEMGFDDTEMNKELLAKNEG 60

Query: 186 SVKAAVRDL 212
           S+K AV +L
Sbjct: 61  SIKRAVMEL 69