DK944605
Clone id YMU02A01NGRL0006_J17
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AATCAATGGGGTTTATGGATCGTGAGCTGAATGCTGTTCTCTTGAGCAAGAATGACGGGA
ATGTGCAACTTGTTCTGGACGATCTTTTAGTTGCAGCTGGATGGGATGGGGCGTTTGAGG
ATCTCCGAGAGATGGGATTCACTGATCAGGCGACAAATGTGAGATTGCTTTTGAAGCACA
AGGGGAGTGTCAAAGCTGCAGTGAGAGATTTGGTGCAGAAGGGGAAGCAGAAAGCTTAAG
TTGCAAAGGCTTGCGATGTATCAACTACTTGAATAAAGGATGCTGCAGTAGCAATATCCA
GTAGCTGAGGATTGTCCGAGTTTTAGCTAGTAGTTGGCATGGAATTGTAACTGGGTTTGG
CTTTGTGAGCTGACATGACATTGGGTCTCTGCCCTTTTCTATGGTTATTGTCCGTTTTGT
AAATTTGTCCTTGTTAAAAAAGGCTTTTGTTTTTTTCTTTGAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id Q9YHE8
Definition sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio rerio
Align length 23
Score (bit) 30.4
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J17, 5'
(461 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio r... 30 3.8
sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270 OS=Ar... 30 3.8
sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norveg... 30 5.0
sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio r... 30 6.5
sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculu... 30 6.5
sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapien... 30 6.5
sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo sap... 29 8.5

>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio
rerio GN=tcf7l1a PE=2 SV=1
Length = 560

Score = 30.4 bits (67), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3

Query: 162 SHLSPDQ*IPSLGDPQTPHPIQL 94
SHLSP+ P G P+TPHP +L
Sbjct: 191 SHLSPEILDPKTGIPRTPHPSEL 213


>sp|Q1PEU9|FBK43_ARATH F-box/Kelch-repeat protein At2g43270
OS=Arabidopsis thaliana GN=At2g43270 PE=2 SV=1
Length = 208

Score = 30.4 bits (67), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2

Query: 149 GDKCEIAFEAQGECQSCSERFGAEGEAESLSCKGLRCI 262
GD+ E+ FE + E Q + SL+C+GL CI
Sbjct: 57 GDRTELGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCI 94


>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus
GN=Nbr1 PE=1 SV=1
Length = 983

Score = 30.0 bits (66), Expect = 5.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3

Query: 123 LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
L EMGF D+ N+RLL KH ++ V +L
Sbjct: 941 LFEMGFCDRQLNLRLLRKHNHNILQVVTEL 970


>sp|Q800Q5|T7L1B_DANRE Transcription factor 7-like 1-B OS=Danio
rerio GN=tcf7l1b PE=2 SV=1
Length = 551

Score = 29.6 bits (65), Expect = 6.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3

Query: 162 SHLSPDQ*IPSLGDPQTPHPIQL 94
+HLSP+ P G P+TPHP +L
Sbjct: 189 AHLSPEILDPKTGIPRTPHPAEL 211


>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus
GN=Nbr1 PE=2 SV=1
Length = 988

Score = 29.6 bits (65), Expect = 6.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3

Query: 123 LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
L EMGF D+ N+RLL KH ++ V +L
Sbjct: 946 LFEMGFCDRQLNLRLLRKHNYNILQVVTEL 975


>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens
GN=NBR1 PE=1 SV=2
Length = 966

Score = 29.6 bits (65), Expect = 6.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3

Query: 123 LREMGFTDQATNVRLLLKHKGSVKAAVRDL 212
L EMGF D+ N+RLL KH ++ V +L
Sbjct: 924 LFEMGFCDRQLNLRLLKKHNYNILQVVTEL 953


>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo
sapiens GN=KRTAP5-5 PE=2 SV=2
Length = 237

Score = 29.3 bits (64), Expect = 8.5
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Frame = +2

Query: 17 GS*AECCSLEQE*RECATCSGRSFSCSWMGWGV*GSPRDGIH*SGDKCEIAFEAQGECQS 196
GS C S C +C G C G G + G C ++G C S
Sbjct: 94 GSKRGCVSCGVSKGACGSCGGSKGGC-----GSCGGSKGG-------CGSCGGSKGGCGS 141

Query: 197 CSERFGAEGE---AESLSCKGLRCINYLNKGCCSSN 295
C G G ++S CK C + CC S+
Sbjct: 142 CGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSS 177


tr_hit_id A9SHX9
Definition tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 70
Score (bit) 51.6
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J17, 5'
(461 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella paten... 52 2e-05
tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g2469... 47 5e-04
tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g2469... 47 5e-04
tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004
tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum ... 43 0.007
tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Popul... 43 0.009
tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa su... 41 0.026
tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subs... 41 0.026
tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026
tr|B6SNC6|B6SNC6_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.075
tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosu... 39 0.098
tr|A7PCR7|A7PCR7_VITVI Chromosome chr17 scaffold_12, whole genom... 37 0.49
tr|Q4UIY1|Q4UIY1_THEAN Ubiquitin-related chaperonin, putative OS... 36 1.1
tr|Q4N6N3|Q4N6N3_THEPA Putative uncharacterized protein OS=Theil... 36 1.1
tr|Q9SII9|Q9SII9_ARATH Putative ubiquitin-like protein OS=Arabid... 35 1.4
tr|Q9SII8|Q9SII8_ARATH Putative ubiquitin-like protein OS=Arabid... 35 1.4
tr|Q94C51|Q94C51_ARATH Putative ubiquitin protein OS=Arabidopsis... 35 1.4
tr|B4K524|B4K524_DROMO GI24027 OS=Drosophila mojavensis GN=GI240... 29 3.2
tr|Q5ALM2|Q5ALM2_CANAL Putative uncharacterized protein SAC3 OS=... 34 4.1
tr|Q4HTC5|Q4HTC5_CAMUP Alginate O-acetylation protein (AlgI) OS=... 33 7.0
tr|A4BRQ4|A4BRQ4_9GAMM Putative uncharacterized protein OS=Nitro... 33 9.2
tr|Q9FWF5|Q9FWF5_ORYSA Putative ubiquitin protein OS=Oryza sativ... 33 9.2
tr|Q7XCL2|Q7XCL2_ORYSJ Os10g0542200 protein OS=Oryza sativa subs... 33 9.2
tr|A9T265|A9T265_PHYPA Predicted protein OS=Physcomitrella paten... 33 9.2
tr|A3C6Z0|A3C6Z0_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A2Z9V2|A2Z9V2_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2

>tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_212537 PE=4 SV=1
Length = 732

Score = 51.6 bits (122), Expect = 2e-05
Identities = 28/70 (40%), Positives = 35/70 (50%)
Frame = +3

Query: 3 SMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHK 182
SMGF R+ N +LL KN E+L EMGF D N +L+LKH
Sbjct: 650 SMGFKQRDFNQMLLKKNEYDLQRTLDDLVMAAERESLLEELEEMGFYDTNLNRQLMLKHN 709

Query: 183 GSVKAAVRDL 212
GSVK V++L
Sbjct: 710 GSVKRVVKEL 719


>tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g24690
OS=Arabidopsis thaliana GN=F22K18.110 PE=2 SV=1
Length = 704

Score = 47.0 bits (110), Expect = 5e-04
Identities = 26/69 (37%), Positives = 33/69 (47%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF + +LN +L N E+L+EMGF D TN RLL K+ G
Sbjct: 629 MGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNG 688

Query: 186 SVKAAVRDL 212
S+K V DL
Sbjct: 689 SIKGVVMDL 697


>tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g24690
OS=Arabidopsis thaliana GN=At4g24690 PE=4 SV=1
Length = 83

Score = 47.0 bits (110), Expect = 5e-04
Identities = 26/69 (37%), Positives = 33/69 (47%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF + +LN +L N E+L+EMGF D TN RLL K+ G
Sbjct: 8 MGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNG 67

Query: 186 SVKAAVRDL 212
S+K V DL
Sbjct: 68 SIKGVVMDL 76


>tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_122833 PE=4 SV=1
Length = 89

Score = 43.9 bits (102), Expect = 0.004
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3

Query: 3 SMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHK 182
SMGF R++N +L KN E+L EMGF D N L+ K+
Sbjct: 7 SMGFKQRDVNQEVLKKNGNDLQRTLDDLVMAVEWDPMLEELEEMGFYDTDMNRLLMFKNN 66

Query: 183 GSVKAAVRDL 212
GS+K V++L
Sbjct: 67 GSIKRVVKEL 76


>tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum
aestivum GN=UBA PE=2 SV=1
Length = 870

Score = 43.1 bits (100), Expect = 0.007
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N +L EMGF D+ TN LL K+ G
Sbjct: 794 MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELNEMGFDDRETNKELLAKNGG 853

Query: 186 SVKAAVRDL 212
S+K AV DL
Sbjct: 854 SIKRAVMDL 862


>tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 324

Score = 42.7 bits (99), Expect = 0.009
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N E+L+EMGF+D+ N +LL K+ G
Sbjct: 250 MGFKQVDLNKEILRRNEYDLEQSVDDLCGFAEWDPILEELQEMGFSDKEMNKKLLKKNNG 309

Query: 186 SVKAAVRDL 212
S++ V D+
Sbjct: 310 SIRGVVMDI 318


>tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa
subsp. japonica GN=ta4 PE=2 SV=1
Length = 208

Score = 41.2 bits (95), Expect = 0.026
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N E+L+EMGF D N +L K+ G
Sbjct: 132 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 191

Query: 186 SVKAAVRDL 212
S+K AV DL
Sbjct: 192 SIKRAVMDL 200


>tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subsp.
japonica GN=OJ1067_B01.6-1 PE=2 SV=1
Length = 845

Score = 41.2 bits (95), Expect = 0.026
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N E+L+EMGF D N +L K+ G
Sbjct: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 828

Query: 186 SVKAAVRDL 212
S+K AV DL
Sbjct: 829 SIKRAVMDL 837


>tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_07886 PE=4 SV=1
Length = 845

Score = 41.2 bits (95), Expect = 0.026
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N E+L+EMGF D N +L K+ G
Sbjct: 769 MGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEINKEMLEKNGG 828

Query: 186 SVKAAVRDL 212
S+K AV DL
Sbjct: 829 SIKRAVMDL 837


>tr|B6SNC6|B6SNC6_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 77

Score = 39.7 bits (91), Expect = 0.075
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +3

Query: 6 MGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQATNVRLLLKHKG 185
MGF +LN +L +N +L EMGF D N LL K++G
Sbjct: 1 MGFRQVDLNKEILRQNNYNLEQSVDDLCGVNEWDPLLAELEEMGFDDTEMNKELLAKNEG 60

Query: 186 SVKAAVRDL 212
S+K AV +L
Sbjct: 61 SIKRAVMEL 69