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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944606
Clone id YMU02A01NGRL0006_J18
Library
Length 336
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTGTGCGAACAAACTGACGTAAGTGTACATAATCATGTAACATATATGTAATCACTCTA
CATGTGTATATAGTCTCATGTATCCGTTTAGAGAGGGCCTCCTTTGGTATATGGCAAGGG
TTCTATCATGCAAGGTTATGGGGAGGCTAAAGGCTAGTTCAAAGATGCAGGATACAAAAA
ATCCATTTTTTTGCACACATATGTGTGACAATTGTATGTAAGGAAACAACAGATAAGGGG
CAAATTGTATGATAGATCTTCCAAGCTAATTTGGCTTGTAGATTAAATTGATGCTGTTCA
TAGTTGANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8A8T9
Definition sp|Q8A8T9|Y1078_BACTN UPF0301 protein BT_1078 OS=Bacteroides thetaiotaomicron
Align length 25
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944606|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J18, 5'
         (308 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8A8T9|Y1078_BACTN UPF0301 protein BT_1078 OS=Bacteroides the...    29   8.4  

>sp|Q8A8T9|Y1078_BACTN UPF0301 protein BT_1078 OS=Bacteroides
           thetaiotaomicron GN=BT_1078 PE=3 SV=1
          Length = 196

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 126 IEPLPYTKGGPL*TDT*DYIHM*SD 52
           IE +P  KGGP+ TDT  Y+H  +D
Sbjct: 72  IENIPLYKGGPIATDTLFYLHTLAD 96
tr_hit_id B4LI60
Definition tr|B4LI60|B4LI60_DROVI GJ13350 OS=Drosophila virilis
Align length 63
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944606|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J18, 5'
         (308 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4LI60|B4LI60_DROVI GJ13350 OS=Drosophila virilis GN=GJ13350 ...    35   2.5  

>tr|B4LI60|B4LI60_DROVI GJ13350 OS=Drosophila virilis GN=GJ13350
           PE=4 SV=1
          Length = 520

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -2

Query: 259 RSIIQFAPYLLFPYIQLSHICVQKNGFFVSCIFELAFSLPITLHDRTLAIYQRRPSLNGY 80
           R ++ F P L+F Y  L+ + +Q N  F   + EL F     +HD  L ++ ++PSL   
Sbjct: 407 RPVLCFQPGLIFRYKILASVPLQANSIFAEPLEELMF----RVHDTGLLLHWKKPSLGEL 462

Query: 79  MRL 71
           + L
Sbjct: 463 IAL 465