DK944607
Clone id YMU02A01NGRL0006_J19
Library
Length 789
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGCATTCAGTATGGCCA
TCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGT
CGAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGC
TCGCCATCTCTTATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACA
AGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGG
TGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCG
TGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGA
AGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCG
CCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTGAGAGGCAGGTGC
AGGTCTCCTGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATT
TTTTTTGGCAGTGATGGCCTGCTTCCCACTTTCCCACTTGGCGCCTAACAAAGCTTGCTT
CTTTATAAGCTTTTTGTGTTCCCACCCCACTTTTGTTTTCCTTAAATGAAAAAAAACCTT
CCCCCCGTGGGGGGGCTTGTCCCTTGGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 182.0
E-value 1.0e-45
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944607|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J19, 5'
(750 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 182 1e-45
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 179 2e-44
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 178 2e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 177 5e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 176 9e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 176 9e-44
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 176 2e-43
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 175 2e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 175 2e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 175 2e-43
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 175 3e-43
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 174 5e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 174 5e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 174 5e-43
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 174 6e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 174 6e-43
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 173 8e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 173 1e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 173 1e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 172 1e-42
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 172 2e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai... 172 2e-42
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 172 2e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 172 2e-42
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 171 3e-42
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 171 3e-42

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 182 bits (463), Expect = 1e-45
Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Frame = +3

Query: 117 LSKSFSGLKATTLF--APKSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 284
L+ F+GLK+ F K+ N + S G RV M VW P KK+ETLSYLPPLS E
Sbjct: 22 LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 285 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 461
++K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82 ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 462 REIAECAKEYPEAFIRVLGFDAERQVQVSCFLVQKP 569
+E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 179 bits (453), Expect = 2e-44
Identities = 87/152 (57%), Positives = 109/152 (71%), Gaps = 5/152 (3%)
Frame = +3

Query: 129 FSGLKATTLF--APKSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 296
F+ LK+T+ F K+ N + S G RV M VW P KKFETLSYLPPLSSEQ+AK
Sbjct: 28 FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 297 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
+VD+++RK PC+EF+ + G VYREH GYYDGRYW MWKLPMFGC D++ VL+E+
Sbjct: 88 EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKP 569
EC K YP AFIR++GFD +RQVQ+ F+ KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 178 bits (452), Expect = 2e-44
Identities = 83/148 (56%), Positives = 102/148 (68%)
Frame = +3

Query: 126 SFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 305
S + T FA S P S G RV M VW P KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31 SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 306 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 485
+++R GW PCIEF K+G VYRE+ + GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88 YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 486 EYPEAFIRVLGFDAERQVQVSCFLVQKP 569
YP+ F R++GFD RQVQ FL KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 177 bits (449), Expect = 5e-44
Identities = 85/156 (54%), Positives = 107/156 (68%), Gaps = 8/156 (5%)
Frame = +3

Query: 126 SFSGLKATTLFAP--KSPNPLA------ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSS 281
+F+GLK+T F K N A S G RV M VW P+ N KFETLSYLP L+
Sbjct: 15 AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 282 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 461
EQ+ K+V++++R W PC+EFD GS+ R++ GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75 EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 462 REIAECAKEYPEAFIRVLGFDAERQVQVSCFLVQKP 569
E+ ECAK YP+AFIRV+GFD RQVQ F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 177 bits (449), Expect = 5e-44
Identities = 85/152 (55%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
Frame = +3

Query: 129 FSGLKATTLFAP--KSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 296
F+GL+++ F K+ N L+ S G RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
K YPE F+R++GFD +RQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 177 bits (449), Expect = 5e-44
Identities = 85/152 (55%), Positives = 106/152 (69%), Gaps = 4/152 (2%)
Frame = +3

Query: 129 FSGLKATTLFAP--KSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 296
F+GL+++ F K+ N L+ S G RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
K YPE F+R++GFD +RQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
Length = 178

Score = 176 bits (447), Expect = 9e-44
Identities = 85/157 (54%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
Frame = +3

Query: 117 LSKSFSGLKATTLF-APKSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 287
L+ F+GLK++ F K N + S GSRV+ M VW P KKFETLSYLPPL+ EQ
Sbjct: 21 LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 288 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 464
+ K+V++++RKGW PC+EF+ + G V+R++ GYYDGRYW MW+LP+FG DAA VL+
Sbjct: 81 LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 465 EIAECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPSV 575
E+AEC EYPEAFIR++GFD RQVQ F+ P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 176 bits (447), Expect = 9e-44
Identities = 83/152 (54%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
Frame = +3

Query: 129 FSGLKATTLFAP--KSPNPLA--ISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 296
F+GLK++ F K+ N + S G RV+ M VW P KKFETLSYLP L+ ++AK
Sbjct: 24 FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 297 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
+VD+++R W PC+EF+ + G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+
Sbjct: 84 EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKP 569
EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
Length = 183

Score = 176 bits (446), Expect = 1e-43
Identities = 85/152 (55%), Positives = 110/152 (72%), Gaps = 4/152 (2%)
Frame = +3

Query: 129 FSGLKATTLF--APKSPNPLAI-SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 299
F+GLK+++ F KS + +I S G RV M VW P KKFETLSYLPPLSSE +AK+
Sbjct: 30 FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 300 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
VD+++RK W PC+EF+ + G VYRE+ GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90 VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
K YP++FIR++GFD RQVQ F+ KP+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
Length = 187

Score = 176 bits (446), Expect = 1e-43
Identities = 84/158 (53%), Positives = 105/158 (66%), Gaps = 5/158 (3%)
Frame = +3

Query: 126 SFSGLKATTLFAPKSPNPLAI----SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 293
SF+GLK+ F L I S G RV MLVW P + KK+ETLSYLP LS EQ+
Sbjct: 25 SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 294 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 470
K+++++++KGW PC+EF+ + G VYREH GYYDGRYW MWKLPMFGC DA VL E+
Sbjct: 85 KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 471 AECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPSV*TF 584
E K YP+A+IR++GFD RQVQ F+ KP F
Sbjct: 145 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 281.0
E-value 4.0e-74
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944607|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J19, 5'
(750 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 281 4e-74
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 196 2e-48
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 192 2e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 192 3e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 192 3e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 192 3e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 189 2e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 185 3e-45
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 184 5e-45
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 184 7e-45
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 184 7e-45
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 181 5e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 181 6e-44
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 181 6e-44
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 180 1e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 180 1e-43
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 179 1e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 179 2e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 179 2e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 178 4e-43
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c... 178 4e-43
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c... 178 4e-43
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 177 5e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c... 177 7e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 177 7e-43
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c... 176 2e-42
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 176 2e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 281 bits (718), Expect = 4e-74
Identities = 131/152 (86%), Positives = 143/152 (94%)
Frame = +3

Query: 117 LSKSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 296
LSKSFSGLKA TLFAPK NPLAIS GSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22 LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82 QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
CAKEYP AFIRVLGFDA+RQVQV+ FLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 196 bits (497), Expect = 2e-48
Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K FSGLK+TTLFA K+ ++ GSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC + +P ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 192 bits (489), Expect = 2e-47
Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K FSGLK+TTL A K+ ++ GSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC + +P ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 192 bits (487), Expect = 3e-47
Identities = 88/153 (57%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK+ TLF+ K+ ++ GSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 62 KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC ++P ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 192 bits (487), Expect = 3e-47
Identities = 89/153 (58%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK+ TLF KS ++ GSRV M VW P KFET SYLPPLS +QIA+QV
Sbjct: 32 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
D+M+++ PCIEFD +G+V R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC YP ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 192 bits (487), Expect = 3e-47
Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK TLF+ K+ A+ GSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 32 KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC ++P ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 189 bits (480), Expect = 2e-46
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK+ TLF+ ++ ++ GSRV M VW P KFET SYLPPL+ ++IAKQV
Sbjct: 31 KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 91 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
EC ++P ++RVLGFD+++QVQ+ FLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
chain OS=Lactuca sativa PE=2 SV=1
Length = 181

Score = 185 bits (469), Expect = 3e-45
Identities = 87/156 (55%), Positives = 110/156 (70%), Gaps = 5/156 (3%)
Frame = +3

Query: 117 LSKSFSGLKATTLF--APKSPNPLAI--SYGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 284
L+ F+GLK+ F K+ N + S G RV M VW P KK+ETLSYLPPLS E
Sbjct: 22 LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 285 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 461
++K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82 ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 462 REIAECAKEYPEAFIRVLGFDAERQVQVSCFLVQKP 569
+E+ EC KEYP AFIRV+GFD+ RQVQ F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 184 bits (467), Expect = 5e-45
Identities = 85/150 (56%), Positives = 107/150 (71%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK+ T+F+ K+ N ++ GSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 482
++M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD+A VLREI EC
Sbjct: 92 EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 483 KEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
K +P F+RVLGFD +QVQ+ FLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 184 bits (466), Expect = 7e-45
Identities = 86/150 (57%), Positives = 107/150 (71%)
Frame = +3

Query: 123 KSFSGLKATTLFAPKSPNPLAISYGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 302
K+FSGLK++TLF+ K+ + ++ GSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 482
D+M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD A VLREI EC
Sbjct: 92 DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 483 KEYPEAFIRVLGFDAERQVQVSCFLVQKPS 572
K +P F+RVLGFD +QVQ+ FLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181