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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944608
Clone id YMU02A01NGRL0006_J20
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_J20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGATCTCGTAGCTTCGTTCCACCACAAGTTACCTGTCTGATCTGAGGTTCATACCTCAAC
AATCTTAATCTTCACAGTTCTTCTCCCACGCAAGTGTTTTAATGCACACGTGGGTTTAAC
TGTATTTTGTCTTTCTTTCATGTCTGTACTGCTGTGCTACGCATGCATAGCTCATCGGCC
AATTAGGAGGTGCTTCGATCTGTTGTCCCTCTGTCCTCTTTGACCCCTCGCAAATGCCTG
AAAGGTTTTTGCTTGCAGCTCCACCATCTGGGGCCAGGGAGATTTGTACCATGCTTACAT
GAATATGAATTTTGAAAAAATACAGGATTTCAATAAGTTATACNAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5RDV6
Definition sp|Q5RDV6|SHSA5_PONAB Protein shisa-5 OS=Pongo abelii
Align length 19
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944608|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J20, 5'
         (344 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RDV6|SHSA5_PONAB Protein shisa-5 OS=Pongo abelii GN=SHISA5 ...    29   6.4  
sp|Q8N114|SHSA5_HUMAN Protein shisa-5 OS=Homo sapiens GN=SHISA5 ...    29   6.4  
sp|Q9VCR6|SAV_DROME Scaffold protein salvador OS=Drosophila mela...    29   6.4  
sp|O73673|GCR_PAROL Glucocorticoid receptor OS=Paralichthys oliv...    29   6.4  
sp|Q6NV95|PAB1L_HUMAN Putative protein PABPC1-like OS=Homo sapie...    29   8.3  

>sp|Q5RDV6|SHSA5_PONAB Protein shisa-5 OS=Pongo abelii GN=SHISA5
           PE=2 SV=1
          Length = 137

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 110 VGLTVFCLSFMSVLLCYAC 166
           VGLT+F LS +++++C+ C
Sbjct: 9   VGLTIFVLSVVTIIICFTC 27


>sp|Q8N114|SHSA5_HUMAN Protein shisa-5 OS=Homo sapiens GN=SHISA5
           PE=2 SV=1
          Length = 240

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 110 VGLTVFCLSFMSVLLCYAC 166
           VGLT+F LS +++++C+ C
Sbjct: 112 VGLTIFVLSVVTIIICFTC 130


>sp|Q9VCR6|SAV_DROME Scaffold protein salvador OS=Drosophila
           melanogaster GN=sav PE=1 SV=2
          Length = 608

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 280 SLAPDGGAASKNLSGICEGSKRTEGQQIEAPPNWPMSYACVAQQY 146
           ++A  GG+A+ +L  +      TE +++  PP W   Y    ++Y
Sbjct: 396 AVAGAGGSANGSLQKVPSQQSLTEPEELPLPPGWATQYTLHGRKY 440


>sp|O73673|GCR_PAROL Glucocorticoid receptor OS=Paralichthys
           olivaceus GN=nr3c1 PE=2 SV=1
          Length = 807

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 10/43 (23%)
 Frame = -2

Query: 295 SMVQISLAPDGGAASKNLS----------GICEGSKRTEGQQI 197
           S+ Q+++AP+GGA +K+            G CEGS+  EG+ I
Sbjct: 49  SLPQLTVAPNGGAGTKDQGEFGGLFESPRGQCEGSEMKEGKII 91


>sp|Q6NV95|PAB1L_HUMAN Putative protein PABPC1-like OS=Homo sapiens
           GN=PABPCP2 PE=5 SV=1
          Length = 269

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -2

Query: 286 QISLAPDGGAASKNLSGICEGSKRTEGQQIEAPPNWPMSYACVAQQYRHERKTKYS*THV 107
           Q ++  +G   S N + IC   K+ E Q             C  +Q + +R T+Y   +V
Sbjct: 66  QTAMDVNGKEFSGNQTYICLAPKKVEEQT---------ELKCKFEQMKQDRITRYQGANV 116

Query: 106 CIKTL 92
           C+K L
Sbjct: 117 CVKNL 121
tr_hit_id B4K2Y6
Definition tr|B4K2Y6|B4K2Y6_DROGR GH23302 OS=Drosophila grimshawi
Align length 41
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944608|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_J20, 5'
         (344 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4K2Y6|B4K2Y6_DROGR GH23302 OS=Drosophila grimshawi GN=GH2330...    34   4.2  
tr|Q608X0|Q608X0_METCA ABC transporter, ATP-binding family prote...    33   9.3  

>tr|B4K2Y6|B4K2Y6_DROGR GH23302 OS=Drosophila grimshawi GN=GH23302
           PE=4 SV=1
          Length = 151

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 187 PNWPMSYACVAQQYRHE-RKTKYS*THVCIKTLAWEKNCED 68
           P   +  +CV Q + H    +++S TH C++TLA+ K C+D
Sbjct: 106 PKASIILSCVIQSFYHNCPSSRWSFTHECLETLAFAKKCKD 146


>tr|Q608X0|Q608X0_METCA ABC transporter, ATP-binding family protein
           OS=Methylococcus capsulatus GN=MCA1367 PE=3 SV=1
          Length = 634

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 286 QISLAPDGGAASKNLSGICEGSKRTEGQQIEAPPNWPMSYACVAQQ 149
           ++ +    G    +L G+  GS++T+  ++  PPNW +++  VAQ+
Sbjct: 29  KVGVTGANGVGKSSLFGLVTGSRQTDAGEVRLPPNWVIAH--VAQE 72