DK944613 |
Clone id |
YMU02A01NGRL0006_K03 |
Library |
YMU02 |
Length |
247 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_K03. 5' end sequence. |
Accession |
DK944613 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GAACTTCTTCACACATTCCAAGGGAATCTTCAGAATCATGATGCTGATTCACAATCCAAA CAGATTGATGATAATCTAAGCGAAGTTTCTTTATTGAGATCAGACATGGATACACTACAT TTGAAACACAAGGATCTTTTGTCACAAGTTCGATTGTGGCGGAGGAACAGAGTGCGCAAC CAAGCAGATATTAAAATTTTAGCTGGTGAGCTGGAGGAAACTATTGTGGATTTAGGAAAT ACTAGAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C895 |
Definition |
sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana |
Align length |
70 |
Score (bit) |
42.4 |
E-value |
0.0007 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P033 |
Definition |
tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
82 |
Score (bit) |
54.3 |
E-value |
3.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944613|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_K03, 5' (247 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome ... 54 3e-06 tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella paten... 53 9e-06 tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomit... 50 4e-05 tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04 tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.007 tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.007 tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genom... 42 0.012 tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026 tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequen... 41 0.026 tr|A8XZQ5|A8XZQ5_CAEBR Putative uncharacterized protein OS=Caeno... 36 1.1 tr|B7Z964|B7Z964_HUMAN cDNA FLJ60222, highly similar to Homo sap... 35 2.5 tr|B7Z863|B7Z863_HUMAN cDNA FLJ54742, highly similar to Mus musc... 35 2.5 tr|B7Z6C7|B7Z6C7_HUMAN cDNA FLJ54546, highly similar to Homo sap... 35 2.5 tr|Q84ER5|Q84ER5_9BURK Putative uncharacterized protein OS=Cupri... 34 3.2 tr|B5L5X8|B5L5X8_MORCA UspA1 OS=Moraxella catarrhalis GN=uspA1 P... 34 3.2 tr|B5DF63|B5DF63_RAT Slmap protein OS=Rattus norvegicus GN=Slmap... 34 4.2 tr|Q9L962|Q9L962_MORCA USPA2H OS=Moraxella catarrhalis GN=USPA2H... 34 4.2 tr|A6QP98|A6QP98_BOVIN LOC529366 protein (Fragment) OS=Bos tauru... 34 4.2 tr|A8BB88|A8BB88_GIALA Protein kinase, putative OS=Giardia lambl... 34 4.2 tr|B6HQC9|B6HQC9_PENCH Pc22g15910 protein OS=Penicillium chrysog... 33 5.5 tr|A9CKP6|A9CKP6_AGRT5 Putative uncharacterized protein OS=Agrob... 33 5.5 tr|Q8RT89|Q8RT89_MORCA Ubiquitous surface protein A2 (Fragment) ... 33 7.2 tr|B5L660|B5L660_MORCA UspA1 OS=Moraxella catarrhalis GN=uspA1 P... 33 9.4 tr|Q7PX97|Q7PX97_ANOGA AGAP001293-PA (Fragment) OS=Anopheles gam... 33 9.4
>tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024749001 PE=4 SV=1 Length = 1652
Score = 54.3 bits (129), Expect = 3e-06 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Frame = +1
Query: 4 LLHTFQGNLQNHDADSQSKQIDDNLSE-VSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRN 180 + G L DA Q +IDD + E + LR +D LHLKHK+ + ++ + + + Sbjct: 958 IAQALHGKLSAEDAIIQLSKIDDLMKEEANNLREVIDALHLKHKEYVDGIQTYVHSHSVD 1017
Query: 181 QADIKILAGELEETIVDLGNTR 246 Q++IK LAGELEE++ +L +R Sbjct: 1018 QSEIKRLAGELEESMAELEESR 1039
>tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208452 PE=4 SV=1 Length = 846
Score = 52.8 bits (125), Expect = 9e-06 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Frame = +1
Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNLS-EVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177 EL + Q + H+A ++ +D L E++ +R MD L L HK++ +++ + R + + Sbjct: 144 ELAMSLQNIVSPHEAGRILEESNDELRMEITNIRGVMDLLQLNHKEMSAEIGIARDLQTK 203
Query: 178 NQADIKILAGELEETIVDL 234 +Q+DIK L GELEET DL Sbjct: 204 DQSDIKRLTGELEETAADL 222
>tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152947 PE=4 SV=1 Length = 852
Score = 50.4 bits (119), Expect = 4e-05 Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 1/67 (1%) Frame = +1
Query: 37 HDADSQSKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGEL 213 HDA ++ +++L +E++ +R ++ LHLKH ++L+++ R + ++Q+ IK L+GEL Sbjct: 165 HDAGQLLEEKNEDLRTEITTIRGVLEALHLKHNEMLAEIGTARDLKTKDQSKIKCLSGEL 224
Query: 214 EETIVDL 234 EET +L Sbjct: 225 EETASEL 231
>tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1 Length = 844
Score = 46.6 bits (109), Expect = 6e-04 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +1
Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNLS-EVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177 +L+ F+ + ++ + + ++ L E LR +D LH+KH++L +++ R + + Sbjct: 143 DLVSNFRNGIASNGVNRSLVKANEELYVEAKKLRGLVDDLHVKHRELSAELGTCRDLQAK 202
Query: 178 NQADIKILAGELEETIVDLGNTR 246 +QA++K L GELEE DL + R Sbjct: 203 DQAELKRLKGELEEACADLESNR 225
>tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_144430 PE=4 SV=1 Length = 884
Score = 43.1 bits (100), Expect = 0.007 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Frame = +1
Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177 EL+ + + ++ + + + D+ L +E +R ++ LHLKH+ L +++ + + Sbjct: 181 ELVSSLRNDIASIGVNGSLAKADEELYAEAKKVRGFVEDLHLKHRQLSAELGTCGDFQAK 240
Query: 178 NQADIKILAGELEETIVDLGNTR 246 +QA++K L GELEE DL R Sbjct: 241 DQAEVKRLKGELEEVCADLEANR 263
>tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1 Length = 884
Score = 43.1 bits (100), Expect = 0.007 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Frame = +1
Query: 1 ELLHTFQGNLQNHDADSQS--KQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRV 174 ELL TF + ++ + K+ ++ +E LRS +D HLKH++L +++ + Sbjct: 184 ELLSTFLNGIASNAVNLLPLVKEDEELYAETKKLRSLVDGFHLKHRELSAELGTCHDFQA 243
Query: 175 RNQADIKILAGELEETIVDLGNTR 246 +++A++K L ELEE DL R Sbjct: 244 KDRAELKRLKDELEEACADLEGVR 267
>tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019139001 PE=4 SV=1 Length = 878
Score = 42.4 bits (98), Expect = 0.012 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Frame = +1
Query: 55 SKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGELEETIVD 231 +K+I +L +EV+ +R LHLKHK + ++ R +N+A++K L GELE T+ + Sbjct: 199 NKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDAKNKAELKRLRGELESTVAE 258
Query: 232 L 234 L Sbjct: 259 L 259
>tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34687 PE=4 SV=1 Length = 844
Score = 41.2 bits (95), Expect = 0.026 Identities = 22/73 (30%), Positives = 42/73 (57%) Frame = +1
Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207 L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217
Query: 208 ELEETIVDLGNTR 246 ELEE++ +L +R Sbjct: 218 ELEESMAELEESR 230
>tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 844
Score = 41.2 bits (95), Expect = 0.026 Identities = 22/73 (30%), Positives = 42/73 (57%) Frame = +1
Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207 L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217
Query: 208 ELEETIVDLGNTR 246 ELEE++ +L +R Sbjct: 218 ELEESMAELEESR 230
>tr|A8XZQ5|A8XZQ5_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae GN=CBG21266 PE=4 SV=1 Length = 1065
Score = 35.8 bits (81), Expect = 1.1 Identities = 20/71 (28%), Positives = 39/71 (54%) Frame = +1
Query: 7 LHTFQGNLQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQA 186 +H LQN +++ Q DD L+++S LR +MD L ++ KD++S ++ + Sbjct: 736 IHRLNDELQNKRLVTEAPQPDDLLNQISRLRVEMDRLEME-KDIVSHKDNEKQEALNELK 794
Query: 187 DIKILAGELEE 219 ++K + E+ E Sbjct: 795 ELKRASDEIHE 805
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