DK944613
Clone id YMU02A01NGRL0006_K03
Library
Length 247
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_K03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GAACTTCTTCACACATTCCAAGGGAATCTTCAGAATCATGATGCTGATTCACAATCCAAA
CAGATTGATGATAATCTAAGCGAAGTTTCTTTATTGAGATCAGACATGGATACACTACAT
TTGAAACACAAGGATCTTTTGTCACAAGTTCGATTGTGGCGGAGGAACAGAGTGCGCAAC
CAAGCAGATATTAAAATTTTAGCTGGTGAGCTGGAGGAAACTATTGTGGATTTAGGAAAT
ACTAGAC
■■Homology search results ■■ -
sp_hit_id Q9C895
Definition sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
Align length 70
Score (bit) 42.4
E-value 0.0007
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944613|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_K03, 5'
(247 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS... 42 7e-04
sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS... 41 0.002
sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS... 41 0.002
sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=R... 36 0.068
sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS... 36 0.068
sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS... 35 0.12
sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein OS... 35 0.15
sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS... 33 0.34
sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2 OS=Asperg... 31 1.7
sp|Q4WVA0|NUF2_ASPFU Probable kinetochore protein nuf2 OS=Asperg... 31 1.7
sp|Q5BH14|NUF2_EMENI Probable kinetochore protein nuf2 OS=Emeric... 30 3.7
sp|Q5AMN3|ATG11_CANAL Autophagy-related protein 11 OS=Candida al... 30 3.7
sp|Q29RL0|WDR67_BOVIN WD repeat-containing protein 67 OS=Bos tau... 30 4.9
sp|Q8WXG6|MADD_HUMAN MAP kinase-activating death domain protein ... 30 4.9
sp|Q6P9Q6|FKB15_MOUSE FK506-binding protein 15 OS=Mus musculus G... 29 8.3

>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2
OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=1
Length = 899

Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1

Query: 40 DADSQSKQIDDNLSEVSL-LRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGELE 216
DA Q I+D + E S LR +D LH++HK+ Q++ + + +Q+++K L G+LE
Sbjct: 218 DATIQLSSINDLMKEESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLE 277

Query: 217 ETIVDLGNTR 246
E +L R
Sbjct: 278 EIKAELEENR 287


>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2
OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1
Length = 844

Score = 41.2 bits (95), Expect = 0.002
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G
Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217

Query: 208 ELEETIVDLGNTR 246
ELEE++ +L +R
Sbjct: 218 ELEESMAELEESR 230


>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2
OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2
Length = 844

Score = 41.2 bits (95), Expect = 0.002
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G
Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217

Query: 208 ELEETIVDLGNTR 246
ELEE++ +L +R
Sbjct: 218 ELEESMAELEESR 230


>sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein
OS=Rattus norvegicus GN=Slmap PE=3 SV=1
Length = 858

Score = 35.8 bits (81), Expect = 0.068
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSL-LRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILA 204
L + + Q K++ +N + SL L SD+ L + K+L +Q+ + +R++AD+K L
Sbjct: 711 LLSSELQRQEKELHNNSQKQSLELTSDLSILQMTRKELENQMGSLKEQHLRDEADLKTLL 770

Query: 205 GELEETIVDL 234
+ E D+
Sbjct: 771 SKAENQAKDV 780


>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1
OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1
Length = 878

Score = 35.8 bits (81), Expect = 0.068
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1

Query: 79 SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGELEETIVDL 234
SE+ R D+D + +K K L +++ R + + D+K + GELE+ +V+L
Sbjct: 208 SEIKSFRGDLDDVLVKFKSLSRELQSHRDADAKVRVDLKRIRGELEDEVVEL 259


>sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein
OS=Oryctolagus cuniculus GN=SLMAP PE=1 SV=2
Length = 771

Score = 35.0 bits (79), Expect = 0.12
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L + + Q K++ ++ + L SD+ L + K+L +Q+ + +R+ AD+KIL
Sbjct: 624 LLSSELQRQEKELHNSQKQSLELTSDLSILQMTRKELENQMGSLKEQHLRDSADLKILLS 683

Query: 208 ELEETIVDL 234
+ E D+
Sbjct: 684 KAENQAKDV 692


>sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein
OS=Homo sapiens GN=SLMAP PE=1 SV=1
Length = 828

Score = 34.7 bits (78), Expect = 0.15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L + + Q K++ ++ + L SD+ L + K+L +QV + +R+ AD+K L
Sbjct: 682 LLSSELQRQEKELHNSQKQSLELTSDLSILQMSRKELENQVGSLKEQHLRDSADLKTLLS 741

Query: 208 ELEETIVDL 234
+ E D+
Sbjct: 742 KAENQAKDV 750


>sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein
OS=Mus musculus GN=Slmap PE=1 SV=2
Length = 845

Score = 33.5 bits (75), Expect = 0.34
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L + + Q K++ ++ + L SD+ L + K+L QV + +R+ AD+K L
Sbjct: 699 LLSSELQRQEKELHNSQKQSFELTSDLSILQMTRKELEKQVGSLKEQHLRDAADLKTLLS 758

Query: 208 ELEETIVDL 234
+ E D+
Sbjct: 759 KAENQAKDV 767


>sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2
OS=Aspergillus oryzae GN=nuf2 PE=3 SV=1
Length = 463

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/50 (26%), Positives = 32/50 (64%)
Frame = +1

Query: 46 DSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIK 195
+SQ+ ID++ ++ ++ +DTL+ +++++ ++ RRN N+A +K
Sbjct: 155 ESQTPVIDEHFNKSEKTKARIDTLYAENQEMEQRLEEMRRNLRANEAQVK 204


>sp|Q4WVA0|NUF2_ASPFU Probable kinetochore protein nuf2
OS=Aspergillus fumigatus GN=nuf2 PE=3 SV=3
Length = 463

Score = 31.2 bits (69), Expect = 1.7
Identities = 12/50 (24%), Positives = 33/50 (66%)
Frame = +1

Query: 46 DSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIK 195
+SQ++ ID++ ++ ++ +DTL ++++++ ++ RR+ N+A +K
Sbjct: 155 ESQTQVIDEHFNKTEKTKARIDTLFMENQEMEQRLEEMRRSLKANEAQVK 204


tr_hit_id A7P033
Definition tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 82
Score (bit) 54.3
E-value 3.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944613|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_K03, 5'
(247 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome ... 54 3e-06
tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella paten... 53 9e-06
tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomit... 50 4e-05
tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04
tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.007
tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.007
tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genom... 42 0.012
tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026
tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequen... 41 0.026
tr|A8XZQ5|A8XZQ5_CAEBR Putative uncharacterized protein OS=Caeno... 36 1.1
tr|B7Z964|B7Z964_HUMAN cDNA FLJ60222, highly similar to Homo sap... 35 2.5
tr|B7Z863|B7Z863_HUMAN cDNA FLJ54742, highly similar to Mus musc... 35 2.5
tr|B7Z6C7|B7Z6C7_HUMAN cDNA FLJ54546, highly similar to Homo sap... 35 2.5
tr|Q84ER5|Q84ER5_9BURK Putative uncharacterized protein OS=Cupri... 34 3.2
tr|B5L5X8|B5L5X8_MORCA UspA1 OS=Moraxella catarrhalis GN=uspA1 P... 34 3.2
tr|B5DF63|B5DF63_RAT Slmap protein OS=Rattus norvegicus GN=Slmap... 34 4.2
tr|Q9L962|Q9L962_MORCA USPA2H OS=Moraxella catarrhalis GN=USPA2H... 34 4.2
tr|A6QP98|A6QP98_BOVIN LOC529366 protein (Fragment) OS=Bos tauru... 34 4.2
tr|A8BB88|A8BB88_GIALA Protein kinase, putative OS=Giardia lambl... 34 4.2
tr|B6HQC9|B6HQC9_PENCH Pc22g15910 protein OS=Penicillium chrysog... 33 5.5
tr|A9CKP6|A9CKP6_AGRT5 Putative uncharacterized protein OS=Agrob... 33 5.5
tr|Q8RT89|Q8RT89_MORCA Ubiquitous surface protein A2 (Fragment) ... 33 7.2
tr|B5L660|B5L660_MORCA UspA1 OS=Moraxella catarrhalis GN=uspA1 P... 33 9.4
tr|Q7PX97|Q7PX97_ANOGA AGAP001293-PA (Fragment) OS=Anopheles gam... 33 9.4

>tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024749001
PE=4 SV=1
Length = 1652

Score = 54.3 bits (129), Expect = 3e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +1

Query: 4 LLHTFQGNLQNHDADSQSKQIDDNLSE-VSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRN 180
+ G L DA Q +IDD + E + LR +D LHLKHK+ + ++ + + +
Sbjct: 958 IAQALHGKLSAEDAIIQLSKIDDLMKEEANNLREVIDALHLKHKEYVDGIQTYVHSHSVD 1017

Query: 181 QADIKILAGELEETIVDLGNTR 246
Q++IK LAGELEE++ +L +R
Sbjct: 1018 QSEIKRLAGELEESMAELEESR 1039


>tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_208452 PE=4 SV=1
Length = 846

Score = 52.8 bits (125), Expect = 9e-06
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1

Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNLS-EVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177
EL + Q + H+A ++ +D L E++ +R MD L L HK++ +++ + R + +
Sbjct: 144 ELAMSLQNIVSPHEAGRILEESNDELRMEITNIRGVMDLLQLNHKEMSAEIGIARDLQTK 203

Query: 178 NQADIKILAGELEETIVDL 234
+Q+DIK L GELEET DL
Sbjct: 204 DQSDIKRLTGELEETAADL 222


>tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_152947 PE=4 SV=1
Length = 852

Score = 50.4 bits (119), Expect = 4e-05
Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +1

Query: 37 HDADSQSKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGEL 213
HDA ++ +++L +E++ +R ++ LHLKH ++L+++ R + ++Q+ IK L+GEL
Sbjct: 165 HDAGQLLEEKNEDLRTEITTIRGVLEALHLKHNEMLAEIGTARDLKTKDQSKIKCLSGEL 224

Query: 214 EETIVDL 234
EET +L
Sbjct: 225 EETASEL 231


>tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1
Length = 844

Score = 46.6 bits (109), Expect = 6e-04
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1

Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNLS-EVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177
+L+ F+ + ++ + + ++ L E LR +D LH+KH++L +++ R + +
Sbjct: 143 DLVSNFRNGIASNGVNRSLVKANEELYVEAKKLRGLVDDLHVKHRELSAELGTCRDLQAK 202

Query: 178 NQADIKILAGELEETIVDLGNTR 246
+QA++K L GELEE DL + R
Sbjct: 203 DQAELKRLKGELEEACADLESNR 225


>tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_144430 PE=4 SV=1
Length = 884

Score = 43.1 bits (100), Expect = 0.007
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1

Query: 1 ELLHTFQGNLQNHDADSQSKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVR 177
EL+ + + ++ + + + D+ L +E +R ++ LHLKH+ L +++ + +
Sbjct: 181 ELVSSLRNDIASIGVNGSLAKADEELYAEAKKVRGFVEDLHLKHRQLSAELGTCGDFQAK 240

Query: 178 NQADIKILAGELEETIVDLGNTR 246
+QA++K L GELEE DL R
Sbjct: 241 DQAEVKRLKGELEEVCADLEANR 263


>tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1
Length = 884

Score = 43.1 bits (100), Expect = 0.007
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1

Query: 1 ELLHTFQGNLQNHDADSQS--KQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRV 174
ELL TF + ++ + K+ ++ +E LRS +D HLKH++L +++ +
Sbjct: 184 ELLSTFLNGIASNAVNLLPLVKEDEELYAETKKLRSLVDGFHLKHRELSAELGTCHDFQA 243

Query: 175 RNQADIKILAGELEETIVDLGNTR 246
+++A++K L ELEE DL R
Sbjct: 244 KDRAELKRLKDELEEACADLEGVR 267


>tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019139001
PE=4 SV=1
Length = 878

Score = 42.4 bits (98), Expect = 0.012
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1

Query: 55 SKQIDDNL-SEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAGELEETIVD 231
+K+I +L +EV+ +R LHLKHK + ++ R +N+A++K L GELE T+ +
Sbjct: 199 NKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDAKNKAELKRLRGELESTVAE 258

Query: 232 L 234
L
Sbjct: 259 L 259


>tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34687 PE=4 SV=1
Length = 844

Score = 41.2 bits (95), Expect = 0.026
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G
Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217

Query: 208 ELEETIVDLGNTR 246
ELEE++ +L +R
Sbjct: 218 ELEESMAELEESR 230


>tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 844

Score = 41.2 bits (95), Expect = 0.026
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1

Query: 28 LQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQADIKILAG 207
L+NH+ K++ DNL R + ++ KH+ L ++ ++ N+ R ++K L+G
Sbjct: 166 LENHN--DYLKEVVDNL------RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSG 217

Query: 208 ELEETIVDLGNTR 246
ELEE++ +L +R
Sbjct: 218 ELEESMAELEESR 230


>tr|A8XZQ5|A8XZQ5_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG21266 PE=4 SV=1
Length = 1065

Score = 35.8 bits (81), Expect = 1.1
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +1

Query: 7 LHTFQGNLQNHDADSQSKQIDDNLSEVSLLRSDMDTLHLKHKDLLSQVRLWRRNRVRNQA 186
+H LQN +++ Q DD L+++S LR +MD L ++ KD++S ++ +
Sbjct: 736 IHRLNDELQNKRLVTEAPQPDDLLNQISRLRVEMDRLEME-KDIVSHKDNEKQEALNELK 794

Query: 187 DIKILAGELEE 219
++K + E+ E
Sbjct: 795 ELKRASDEIHE 805