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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944617
Clone id YMU02A01NGRL0006_K07
Library
Length 387
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_K07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATGACAGAACTTTACTTGTTGCTGATCCTCGCCGTTGCGAGCCCAAGAAGTTTGGAGGT
AGGGGTGCACGTGCTCGCTTCCAGAAGTCTTACCGATAGGTCTACGCAGAGAAGTACATG
AGCCTTTTTCCTTCTTTGTTCTTTCGTATCAGAATGGAGATTGCGGAGGCTTTCTGCTGA
ATTGGAGATTTTCTATTTTGGTGGCATCATGCCAATGTCATTTTGAGTGAGGCTGTAAGA
ACTCGGCGTATGTTATGATTTACGCAAAGCTAGATTTTGAGTGCATACTTCTTCTCTGTT
TATGACAGCAGGACATGGATGTTTTCATGGAAGTCAAGATGTAAAGCATCTTTGAATAAN
AAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0IQF7
Definition sp|Q0IQF7|RS16_ORYSJ 40S ribosomal protein S16 OS=Oryza sativa subsp. japonica
Align length 32
Score (bit) 70.9
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944617|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_K07, 5'
         (354 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0IQF7|RS16_ORYSJ 40S ribosomal protein S16 OS=Oryza sativa s...    71   2e-12
sp|A2ZB00|RS16_ORYSI 40S ribosomal protein S16 OS=Oryza sativa s...    71   2e-12
sp|P16149|RS16_LUPPO 40S ribosomal protein S16 OS=Lupinus polyph...    71   2e-12
sp|P46293|RS16_GOSHI 40S ribosomal protein S16 OS=Gossypium hirs...    71   2e-12
sp|Q9XEK7|RS16_TORRU 40S ribosomal protein S16 OS=Tortula rurali...    70   4e-12
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 OS=Fritillaria ag...    70   4e-12
sp|Q54Q51|RS16_DICDI 40S ribosomal protein S16 OS=Dictyostelium ...    69   6e-12
sp|Q42340|RS163_ARATH 40S ribosomal protein S16-3 OS=Arabidopsis...    69   1e-11
sp|Q9SK22|RS161_ARATH 40S ribosomal protein S16-1 OS=Arabidopsis...    69   1e-11
sp|Q7SFJ9|RS16_NEUCR 40S ribosomal protein S16 OS=Neurospora cra...    67   3e-11
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 OS=Aedes aegypti ...    67   3e-11
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 OS=Spodoptera fru...    65   8e-11
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 OS=Drosophila mel...    65   8e-11
sp|Q9M8X9|RS162_ARATH 40S ribosomal protein S16-2 OS=Arabidopsis...    65   1e-10
sp|P62250|RS16_RAT 40S ribosomal protein S16 OS=Rattus norvegicu...    64   2e-10
sp|Q29201|RS16_PIG 40S ribosomal protein S16 OS=Sus scrofa GN=RP...    64   2e-10
sp|P14131|RS16_MOUSE 40S ribosomal protein S16 OS=Mus musculus G...    64   2e-10
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 OS=Ictalurus punc...    64   2e-10
sp|P62249|RS16_HUMAN 40S ribosomal protein S16 OS=Homo sapiens G...    64   2e-10
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 OS=Heteropneustes...    64   2e-10
sp|Q3T0X6|RS16_BOVIN 40S ribosomal protein S16 OS=Bos taurus GN=...    64   2e-10
sp|Q6BSI7|RS16_DEBHA 40S ribosomal protein S16 OS=Debaryomyces h...    63   5e-10
sp|O94017|RS16_CANAL 40S ribosomal protein S16 OS=Candida albica...    63   5e-10
sp|Q759L8|RS16_ASHGO 40S ribosomal protein S16 OS=Ashbya gossypi...    63   5e-10
sp|O60144|RS16_SCHPO 40S ribosomal protein S16 OS=Schizosaccharo...    62   1e-09
sp|Q875N2|RS16_KLULA 40S ribosomal protein S16 OS=Kluyveromyces ...    62   1e-09
sp|Q6FR56|RS16_CANGA 40S ribosomal protein S16 OS=Candida glabra...    62   1e-09
sp|P40213|RS16_YEAST 40S ribosomal protein S16 OS=Saccharomyces ...    60   3e-09
sp|O26146|RLSX_METTH Fused L13/S9 ribosomal protein OS=Methanoba...    60   3e-09
sp|Q876B4|RS16_SACEX 40S ribosomal protein S16 OS=Saccharomyces ...    57   3e-08

>sp|Q0IQF7|RS16_ORYSJ 40S ribosomal protein S16 OS=Oryza sativa
           subsp. japonica GN=RPS16A PE=2 SV=1
          Length = 149

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>sp|A2ZB00|RS16_ORYSI 40S ribosomal protein S16 OS=Oryza sativa
           subsp. indica GN=RPS16A PE=2 SV=1
          Length = 149

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>sp|P16149|RS16_LUPPO 40S ribosomal protein S16 OS=Lupinus
           polyphyllus GN=RPS16 PE=2 SV=1
          Length = 145

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 114 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145


>sp|P46293|RS16_GOSHI 40S ribosomal protein S16 OS=Gossypium
           hirsutum GN=RPS16 PE=2 SV=1
          Length = 145

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 114 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145


>sp|Q9XEK7|RS16_TORRU 40S ribosomal protein S16 OS=Tortula ruralis
           GN=RPS16 PE=2 SV=1
          Length = 142

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 111 YDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142


>sp|O22647|RS16_FRIAG 40S ribosomal protein S16 OS=Fritillaria
           agrestis GN=RPS16 PE=2 SV=1
          Length = 145

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 114 YDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145


>sp|Q54Q51|RS16_DICDI 40S ribosomal protein S16 OS=Dictyostelium
           discoideum GN=rps16 PE=3 SV=1
          Length = 147

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDR+LLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 116 YDRSLLVADPRRCEPKKFGGRGARARFQKSYR 147


>sp|Q42340|RS163_ARATH 40S ribosomal protein S16-3 OS=Arabidopsis
           thaliana GN=RPS16C PE=2 SV=1
          Length = 146

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct: 115 YDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>sp|Q9SK22|RS161_ARATH 40S ribosomal protein S16-1 OS=Arabidopsis
           thaliana GN=RPS16A PE=2 SV=1
          Length = 146

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct: 115 YDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>sp|Q7SFJ9|RS16_NEUCR 40S ribosomal protein S16 OS=Neurospora crassa
           GN=rps-16 PE=3 SV=1
          Length = 142

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           +DRTLLVADPRRCEPKKFGG+GAR+RFQKSYR
Sbjct: 111 FDRTLLVADPRRCEPKKFGGKGARSRFQKSYR 142
tr_hit_id Q9M5L1
Definition tr|Q9M5L1|Q9M5L1_EUPES 40S ribosomal protein S16 (Fragment) OS=Euphorbia esula
Align length 32
Score (bit) 70.9
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944617|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_K07, 5'
         (354 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9M5L1|Q9M5L1_EUPES 40S ribosomal protein S16 (Fragment) OS=E...    71   3e-11
tr|B7FMP2|B7FMP2_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B7FLC1|B7FLC1_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B7FL97|B7FL97_MEDTR Putative uncharacterized protein OS=Medic...    71   3e-11
tr|B7E333|B7E333_ORYSJ cDNA clone:001-019-B10, full insert seque...    71   3e-11
tr|B6TG61|B6TG61_MAIZE 40S ribosomal protein S16 OS=Zea mays PE=...    71   3e-11
tr|B6SNQ7|B6SNQ7_MAIZE 40S ribosomal protein S16 OS=Zea mays PE=...    71   3e-11
tr|B5KV77|B5KV77_HELAN 40S ribosomal protein S16 (Fragment) OS=H...    71   3e-11
tr|B5KV60|B5KV60_HELAN 40S ribosomal protein S16 (Fragment) OS=H...    71   3e-11
tr|A9NTC7|A9NTC7_PICSI Putative uncharacterized protein OS=Picea...    71   3e-11
tr|A9NK32|A9NK32_PICSI Putative uncharacterized protein OS=Picea...    71   3e-11
tr|A5BX24|A5BX24_VITVI Putative uncharacterized protein (Chromos...    71   3e-11
tr|A5ASC2|A5ASC2_VITVI Putative uncharacterized protein (Chromos...    71   3e-11
tr|Q6RK71|Q6RK71_CAPAN Small subunit ribosomal protein S16 (Frag...    70   7e-11
tr|A9TQQ5|A9TQQ5_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9TGH1|A9TGH1_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9TBI3|A9TBI3_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9RMV9|A9RMV9_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|B6TVN0|B6TVN0_MAIZE 40S ribosomal protein S16 OS=Zea mays PE=...    69   9e-11
tr|A8HSU7|A8HSU7_CHLRE Ribosomal protein S16 OS=Chlamydomonas re...    69   9e-11
tr|A9P9A0|A9P9A0_POPTR Putative uncharacterized protein OS=Popul...    68   3e-10
tr|A9P8S1|A9P8S1_POPTR Putative uncharacterized protein OS=Popul...    68   3e-10
tr|A9P8I2|A9P8I2_POPTR Putative uncharacterized protein OS=Popul...    68   3e-10
tr|Q7PJE1|Q7PJE1_ANOGA AGAP011424-PA (Fragment) OS=Anopheles gam...    67   5e-10
tr|Q5MIR8|Q5MIR8_AEDAL Ribosomal protein S16 OS=Aedes albopictus...    67   5e-10
tr|Q56FG2|Q56FG2_LYSTE Ribosomal protein S16 OS=Lysiphlebus test...    67   5e-10
tr|Q4PM67|Q4PM67_IXOSC Ribosomal protein S16 OS=Ixodes scapulari...    67   5e-10
tr|Q4GXQ4|Q4GXQ4_CICCA Ribosomal protein S16e OS=Cicindela campe...    67   5e-10
tr|Q4GXQ3|Q4GXQ3_SCALT Ribosomal protein S16e OS=Scarabaeus lati...    67   5e-10
tr|Q09JP6|Q09JP6_ARGMO Ribosomal protein S16 OS=Argas monolakens...    67   5e-10

>tr|Q9M5L1|Q9M5L1_EUPES 40S ribosomal protein S16 (Fragment)
           OS=Euphorbia esula PE=2 SV=1
          Length = 144

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 113 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 144


>tr|B7FMP2|B7FMP2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 140

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 109 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 140


>tr|B7FLC1|B7FLC1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 140

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 109 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 140


>tr|B7FL97|B7FL97_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 143

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 112 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 143


>tr|B7E333|B7E333_ORYSJ cDNA clone:001-019-B10, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 149

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>tr|B6TG61|B6TG61_MAIZE 40S ribosomal protein S16 OS=Zea mays PE=2
           SV=1
          Length = 148

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 117 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 148


>tr|B6SNQ7|B6SNQ7_MAIZE 40S ribosomal protein S16 OS=Zea mays PE=2
           SV=1
          Length = 149

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>tr|B5KV77|B5KV77_HELAN 40S ribosomal protein S16 (Fragment)
           OS=Helianthus annuus GN=RS16 PE=4 SV=1
          Length = 129

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 98  YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 129


>tr|B5KV60|B5KV60_HELAN 40S ribosomal protein S16 (Fragment)
           OS=Helianthus annuus GN=RS16 PE=4 SV=1
          Length = 135

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 104 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 135


>tr|A9NTC7|A9NTC7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 96
           YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 112 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 143