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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944634
Clone id YMU02A01NGRL0006_L08
Library
Length 284
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_L08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTACTTAACTTACCTTCGGACGAAATAGGTCTTGAGTTCAACACTTGTTGTATACATCT
TTGAAGTCTCTTTGGATTTCTTTCTACATCAAAAGTTACCTTCTTCTCACATACCTCAAG
GTGCACTATTTTCGCATAGCGAAGACAACTTGATGTGTACATAGTATATTATTTGAAACA
GATTGTGTCGCTCGTATGCGAAAATAGAGCACTCGGATTCTATTTTCACCTAGTAGCGAA
GTGTTTGAATTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6ZPS6
Definition sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus
Align length 47
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944634|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L08, 5'
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing p...    30   4.8  
sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain-containing p...    30   4.8  

>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing
           protein 1 OS=Mus musculus GN=Ankib1 PE=2 SV=2
          Length = 1085

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -1

Query: 183 ICFK*YTMYTSS------CLRYAKIVHLEVCEKKVTFDVERNPKRLQ 61
           IC + +  ++SS      C RY  I H+E   K++T + E+  KR Q
Sbjct: 548 ICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQ 594


>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain-containing
           protein 1 OS=Homo sapiens GN=ANKIB1 PE=1 SV=3
          Length = 1089

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -1

Query: 183 ICFK*YTMYTSS------CLRYAKIVHLEVCEKKVTFDVERNPKRLQ 61
           IC + +  ++SS      C RY  I H+E   K++T + E+  KR Q
Sbjct: 547 ICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQ 593
tr_hit_id B1KQI9
Definition tr|B1KQI9|B1KQI9_SHEWM Response regulator receiver modulated CheW protein OS=Shewanella woodyi (strain ATCC 51908 / MS32)
Align length 36
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944634|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L08, 5'
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1KQI9|B1KQI9_SHEWM Response regulator receiver modulated Che...    35   2.5  
tr|A8FWR2|A8FWR2_SHESH Response regulator receiver modulated Che...    35   2.5  
tr|A3QEW2|A3QEW2_SHELP Response regulator receiver modulated Che...    35   2.5  
tr|A9DJP1|A9DJP1_9GAMM Chemotaxis protein CheV OS=Shewanella ben...    35   2.5  
tr|B0TJG0|B0TJG0_SHEHH Response regulator receiver modulated Che...    34   3.2  
tr|A8H3T6|A8H3T6_SHEPA Response regulator receiver modulated Che...    34   3.2  
tr|Q12MA0|Q12MA0_SHEDO Response regulator receiver modulated Che...    34   4.2  
tr|Q0HU74|Q0HU74_SHESR Response regulator receiver modulated Che...    33   5.5  
tr|Q0HHX4|Q0HHX4_SHESM Response regulator receiver modulated Che...    33   5.5  
tr|A4Y7V7|A4Y7V7_SHEPC Response regulator receiver modulated Che...    33   5.5  
tr|A1RIN1|A1RIN1_SHESW Response regulator receiver modulated Che...    33   5.5  
tr|A0KY22|A0KY22_SHESA Response regulator receiver modulated Che...    33   5.5  
tr|A2V418|A2V418_SHEPU Response regulator receiver modulated Che...    33   5.5  
tr|A6RGH6|A6RGH6_AJECN Predicted protein OS=Ajellomyces capsulat...    33   7.1  
tr|Q081A3|Q081A3_SHEFN Response regulator receiver modulated Che...    33   7.2  
tr|A1S781|A1S781_SHEAM Response regulator receiver modulated Che...    33   9.3  
tr|Q1ZVS9|Q1ZVS9_9VIBR Chemotaxis protein CheV OS=Vibrio angustu...    33   9.3  
tr|B8CPK5|B8CPK5_9GAMM Chemotaxis protein CheV OS=Shewanella pie...    33   9.3  

>tr|B1KQI9|B1KQI9_SHEWM Response regulator receiver modulated CheW
           protein OS=Shewanella woodyi (strain ATCC 51908 / MS32)
           GN=Swoo_1944 PE=4 SV=1
          Length = 314

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTQLVGENRLELLLFRINATQLFAINVFKVKEVV 44


>tr|A8FWR2|A8FWR2_SHESH Response regulator receiver modulated CheW
           protein OS=Shewanella sediminis (strain HAW-EB3)
           GN=Ssed_2678 PE=4 SV=1
          Length = 312

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRINATQLFAINVFKVKEVV 44


>tr|A3QEW2|A3QEW2_SHELP Response regulator receiver modulated CheW
           protein OS=Shewanella loihica (strain ATCC BAA-1088 /
           PV-4) GN=Shew_2144 PE=4 SV=1
          Length = 317

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTQLVGENRLELLLFRINATQLFAINVFKVKEVV 44


>tr|A9DJP1|A9DJP1_9GAMM Chemotaxis protein CheV OS=Shewanella
           benthica KT99 GN=KT99_09473 PE=4 SV=1
          Length = 313

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTQLVGENRLELLLFRINATQLFAINVFKVKEVV 44


>tr|B0TJG0|B0TJG0_SHEHH Response regulator receiver modulated CheW
           protein OS=Shewanella halifaxensis (strain HAW-EB4)
           GN=Shal_2398 PE=4 SV=1
          Length = 314

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRISATQLFAINVFKVKEVV 44


>tr|A8H3T6|A8H3T6_SHEPA Response regulator receiver modulated CheW
           protein OS=Shewanella pealeana (strain ATCC 700345 /
           ANG-SQ1) GN=Spea_1901 PE=4 SV=1
          Length = 314

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI ATQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRISATQLFAINVFKVKEVV 44


>tr|Q12MA0|Q12MA0_SHEDO Response regulator receiver modulated CheW
           protein OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=Sden_2144 PE=4 SV=1
          Length = 313

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T+L+GENR+ +L FRI +TQ  + N+    +VV
Sbjct: 9   DQRTNLVGENRLELLLFRINSTQLFAINVFKVKEVV 44


>tr|Q0HU74|Q0HU74_SHESR Response regulator receiver modulated CheW
           protein OS=Shewanella sp. (strain MR-7) GN=Shewmr7_2344
           PE=4 SV=1
          Length = 314

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI +TQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRINSTQLFAINVFKVKEVV 44


>tr|Q0HHX4|Q0HHX4_SHESM Response regulator receiver modulated CheW
           protein OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2272
           PE=4 SV=1
          Length = 314

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI +TQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRINSTQLFAINVFKVKEVV 44


>tr|A4Y7V7|A4Y7V7_SHEPC Response regulator receiver modulated CheW
           protein OS=Shewanella putrefaciens (strain CN-32 / ATCC
           BAA-453) GN=Sputcn32_2319 PE=4 SV=1
          Length = 314

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 251 NSNTSLLGENRIRVLYFRIRATQSVSNNILCTHQVV 144
           +  T L+GENR+ +L FRI +TQ  + N+    +VV
Sbjct: 9   DQRTKLVGENRLELLLFRINSTQLFAINVFKVKEVV 44