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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944639
Clone id YMU02A01NGRL0006_L13
Library
Length 766
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_L13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTTCTTGGGGTCTCCTGCCTTCACACCCGGCGCATTTACCTCCAATGGGTCACGCCTC
TCCATGTCGGCAGAGTGGCTGCCTGGGCAGCCCCGCCCCGCTCATCTAGACGGATCTTCC
CCCGGGGACTTTGGCTTTGATCCTCTAGGCCTTGCAGAGGTGCCTGAGAATTTTGAGCGA
TACAAGGAGTCTGAGCTCATTCACTGCAGATGGGCAATGCTTGCTGTGCCTGGTGTGCTA
CTCCCAGAGGCACTTGGTCTGGGCAACTGGGTGGATGCTCAGAAATGGGCCGCCACTCCG
GGTGGCCAGGCTACGTATTTGGGTAACCCTGTCCCATGGGGCAATCTGCCAGTAATTCTT
GCAGTGGAGGCTTTTGCTATTGCCTTCGCTGAGGCACAGAGAAATTATGAGAAGGACCCA
GAGAAGCGGAAGTACCCTGGTGGGCCCTTCGATCCGCTCGGCTTCTCTAAGAATCCAAAA
AAGTTTGAGGAATACAAGCTCAAGGAATTGAAGAATGGTCGCTTGGCACTTCTTGCATTC
GTGGGATTCTCAGTGCAGGCTGCGGCTCTCCCTGGGACTGGGCCCTTGGAGAAACTCTTC
ACCCATCTTTGCCAACCCATGGCACAAAAAACATTGCAGAAAATTGTAATTTCCCCCAAA
ATGGGGTGGTAAAACTGGTATAGAAGATGTTCTTTTGGGTCTTTATGAAAAAAAAAAATT
TTTTTCTTCTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SDM1
Definition sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare
Align length 195
Score (bit) 287.0
E-value 3.0e-77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944639|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L13, 5'
         (707 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...   287   3e-77
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...   268   2e-71
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...   117   6e-26
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...   116   1e-25
sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...   115   3e-25
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...   110   6e-24
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl...   107   5e-23
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...   106   1e-22
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...   105   2e-22
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...   105   3e-22
sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chlorop...   104   4e-22
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...   104   5e-22
sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplas...   104   5e-22
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...   103   1e-21
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...   102   2e-21
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...   102   2e-21
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...   102   2e-21
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...   102   2e-21
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop...   102   3e-21
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...   102   3e-21
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...   102   3e-21
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...   102   3e-21
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas...   102   3e-21
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...   102   3e-21
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...   101   3e-21
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...   101   3e-21
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop...   101   5e-21
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas...   101   5e-21
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl...   100   6e-21
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl...   100   6e-21

>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score =  287 bits (735), Expect = 3e-77
 Identities = 135/195 (69%), Positives = 147/195 (75%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A+ +   R++MSAEW PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 34  AYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRW 93

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AML VPGVL+PEALGLGNWV AQ+WAA P GQATYLGNPVPWGNLP              
Sbjct: 94  AMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAE 153

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFSK+P            NGRLA+LAFVGF VQ +A P
Sbjct: 154 QQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 213

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L THL  P
Sbjct: 214 GTGPLENLATHLADP 228


>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A,
           chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
          Length = 246

 Score =  268 bits (686), Expect = 2e-71
 Identities = 132/206 (64%), Positives = 148/206 (71%)
 Frame = +1

Query: 1   KFLGSPAFTPGAFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFER 180
           KF  +     GA T+  SR SMSA+W+PGQPRP++LDGS+PGDFGFD LGL EVP N ER
Sbjct: 25  KFAAAMPVYVGA-TNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLER 83

Query: 181 YKESELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXX 360
           YKESELIHCRWAMLAVPG+++PEALGLGNWV AQ+WAA PGGQATYLG PVPWG LP   
Sbjct: 84  YKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTIL 143

Query: 361 XXXXXXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAF 540
                       QR+ EKD EK+KYPGG FDPLG+SK+P            NGRLALLA 
Sbjct: 144 AIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAI 203

Query: 541 VGFSVQAAALPGTGPLEKLFTHLCQP 618
           VGF VQ +A  GTGPLE L THL  P
Sbjct: 204 VGFCVQQSAYLGTGPLENLATHLADP 229


>sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1
          Length = 280

 Score =  117 bits (293), Expect = 6e-26
 Identities = 69/190 (36%), Positives = 90/190 (47%), Gaps = 7/190 (3%)
 Frame = +1

Query: 97  PAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPGVLLPEALGL--GNW 270
           P +L+G   GD+G+DP GL + PENF +Y+  ELIH RWAML   G ++PEAL     N 
Sbjct: 82  PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141

Query: 271 VDAQKWAAT-----PGGQATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYEKDPEKRKY 435
                W  T      G    Y G  +P   +                +     D E + +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLH 201

Query: 436 PGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGPLEKLFTHLCQ 615
           PGGPFDPLG +K+P            NGRLA+ A +GF +Q A + G GP+E L  HL  
Sbjct: 202 PGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQ-AYVTGEGPVENLAKHLSD 260

Query: 616 PMAQKTLQKI 645
           P     L  I
Sbjct: 261 PFGNNLLTVI 270


>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score =  116 bits (291), Expect = 1e-25
 Identities = 79/226 (34%), Positives = 100/226 (44%), Gaps = 44/226 (19%)
 Frame = +1

Query: 76  WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPE----------------------------- 168
           W PG   P +LDGS  GD+GFDP GL +  E                             
Sbjct: 55  WFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAV 114

Query: 169 --------------NFERYKESELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGG 306
                           +R++E ELIH RWAMLA  G +  E L    W DA K     G 
Sbjct: 115 DPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG- 173

Query: 307 QATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYEKDPEKRKYPGGP-FDPLGFSKNPXX 483
            ++YLG P+P+ ++                QRN E D EKR YPGG  FDPLG + +P  
Sbjct: 174 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVK 231

Query: 484 XXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGPLEKLFTHLCQPM 621
                     + RLA++ F+GF+VQAAA  G GPL    THL  P+
Sbjct: 232 KAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPL 276


>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score =  115 bits (287), Expect = 3e-25
 Identities = 81/226 (35%), Positives = 100/226 (44%), Gaps = 44/226 (19%)
 Frame = +1

Query: 76  WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPE----------------------------- 168
           W PG   P  LDGS  GD+GFDP GL +  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 169 --------------NFERYKESELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGG 306
                           +R++E ELIH RWAMLA  G L  E L    W DA K     G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 176

Query: 307 QATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYEKDPEKRKYPGGP-FDPLGFSKNPXX 483
            ++YLG P+P+ ++                QRN E D EKR YPGG  FDPLG + +P  
Sbjct: 177 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234

Query: 484 XXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGPLEKLFTHLCQPM 621
                     + RLA++AF+GF+VQAAA  G GPL    THL  P+
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPL 279


>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20,
           chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20
           PE=1 SV=1
          Length = 231

 Score =  110 bits (276), Expect = 6e-24
 Identities = 69/204 (33%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
 Frame = +1

Query: 76  WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPGVLLPEAL 255
           WLPG   PA+LDGS  GD GFDPL LAE PE+   + ++++++ RWAML V G+L+PE L
Sbjct: 36  WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVL 95

Query: 256 GLGNWVDAQKWAATPGGQATYLGNPVP--------------WGNLPXXXXXXXXXXXXXX 393
                ++A +W   PG +  +  +                 W ++               
Sbjct: 96  TKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIF--- 152

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
             ++Y   P +  YPG  F+PL F+               NGRLA+LAF+GF VQ   + 
Sbjct: 153 --KSYSLPPHECGYPGRVFNPLNFA-----PLENKEKELANGRLAMLAFLGFLVQ-HNVH 204

Query: 574 GTGPLEKLFTHLCQPMAQKTLQKI 645
           G GP E L  HL  P     +Q I
Sbjct: 205 GKGPFENLQQHLADPWHNTIIQTI 228


>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1,
           chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1
          Length = 266

 Score =  107 bits (268), Expect = 5e-23
 Identities = 73/192 (38%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
 Frame = +1

Query: 85  GQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPGVLLPEAL--- 255
           G+P P++L G  PGD+G+D  GL+  PE F R +E E+IHCRWAML   G + PE L   
Sbjct: 63  GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 121

Query: 256 ----GLGNWVDAQKWAATPGGQATYLGNP--VPWGNLPXXXXXXXXXXXXXXXQRNYEKD 417
               G   W  A     + GG   YLGNP  V   ++                 R   + 
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEG 180

Query: 418 P----EKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGP 585
           P    E   YPGG FDPLG + +P            NGRLA+ +  GF VQ A + G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQ-AIVTGKGP 239

Query: 586 LEKLFTHLCQPM 621
           LE L  HL  P+
Sbjct: 240 LENLADHLADPV 251


>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2
           SV=1
          Length = 276

 Score =  106 bits (264), Expect = 1e-22
 Identities = 76/219 (34%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
 Frame = +1

Query: 76  WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPE----------------------------- 168
           W PG   P  LDGS  GD GFDP GL +  E                             
Sbjct: 59  WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 118

Query: 169 --------------NFERYKESELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGG 306
                           +R++E ELIH RWAML   G +  EAL    W DA K     G 
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177

Query: 307 QATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXX 486
            ++YLG P+P+ +L                QRN E DPEKR YPGG FDPLG + +P   
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKL 235

Query: 487 XXXXXXXXXNGRLALLAFVGFSVQAAALPGTGPLEKLFT 603
                    + RLA++AF+ F++Q AA  G GP+  L T
Sbjct: 236 DTLKLAEIKHSRLAMVAFLIFALQ-AAFTGKGPVSFLAT 273


>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36,
           chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1
          Length = 265

 Score =  105 bits (263), Expect = 2e-22
 Identities = 70/192 (36%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
 Frame = +1

Query: 97  PAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPGVLLPEAL------- 255
           P++L G  PGD+G+D  GL+  PE F R +E E+IHCRWAML   G + PE L       
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125

Query: 256 GLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYE-------- 411
           G   W  A     + GG   YLGNP    NL                    E        
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNP----NLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180

Query: 412 -KDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGPL 588
             +   + YPGG FDPLG + +P            NGRLA+ +  GF VQ A + G GP+
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ-AIVTGKGPI 239

Query: 589 EKLFTHLCQPMA 624
           E LF H+  P+A
Sbjct: 240 ENLFDHVADPVA 251



 Score = 35.0 bits (79), Expect = 0.40
 Identities = 22/50 (44%), Positives = 27/50 (54%)
 Frame = +1

Query: 85  GQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPG 234
           G P    LD   PG   FDPLGLA+ PE F   K  E+ + R AM ++ G
Sbjct: 178 GGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226


>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151,
           chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2
          Length = 265

 Score =  105 bits (261), Expect = 3e-22
 Identities = 72/195 (36%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
 Frame = +1

Query: 97  PAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPGVLLPEAL------- 255
           P++L G  PGD+G+D  GL+  PE F + +E E+IHCRWAML   G + PE L       
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125

Query: 256 GLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRNYE-------- 411
           G   W  A     + GG   YLGNP    NL                    E        
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNP----NLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 412 ----KDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALPGT 579
                DP    YPGG FDPLG + +P            NGRLA+ +  GF VQ A + G 
Sbjct: 181 LGEGLDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ-AIVTGK 236

Query: 580 GPLEKLFTHLCQPMA 624
           GP+E LF HL  P+A
Sbjct: 237 GPIENLFDHLADPVA 251



 Score = 33.9 bits (76), Expect = 0.88
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = +1

Query: 85  GQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLAVPG 234
           G P    LD   PG   FDPLGLA+ P+ F   K  E+ + R AM ++ G
Sbjct: 178 GGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 226
tr_hit_id A9NRY9
Definition tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 213
Score (bit) 291.0
E-value 4.0e-77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944639|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L13, 5'
         (707 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea...   291   4e-77
tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea...   289   1e-76
tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...   288   2e-76
tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subs...   288   2e-76
tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea...   287   5e-76
tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza...   286   1e-75
tr|Q40512|Q40512_TOBAC Photosystem I light-harvesting chlorophyl...   284   4e-75
tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   283   1e-74
tr|Q02069|Q02069_PINSY Type 1 chlorophyll a /b-binding protein O...   282   1e-74
tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   282   1e-74
tr|Q7DM40|Q7DM40_PINSY Type 1 chlorophyll a /b-binding protein (...   282   2e-74
tr|B4XGT7|B4XGT7_9POAL Chloroplast chlorophyll a/b binding prote...   282   2e-74
tr|Q9C5R7|Q9C5R7_ARATH AT3g54890 OS=Arabidopsis thaliana GN=AT3g...   280   6e-74
tr|Q01667|Q01667_ARATH AT3g54890 (Chlorophyll A/B-binding protei...   280   8e-74
tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella paten...   278   2e-73
tr|A5AE63|A5AE63_VITVI Putative uncharacterized protein OS=Vitis...   278   2e-73
tr|B7FH03|B7FH03_MEDTR Putative uncharacterized protein OS=Medic...   277   5e-73
tr|A9PJ58|A9PJ58_POPJC Putative uncharacterized protein OS=Popul...   275   3e-72
tr|A9T3X6|A9T3X6_PHYPA Predicted protein OS=Physcomitrella paten...   273   1e-71
tr|A9TJX6|A9TJX6_PHYPA Predicted protein OS=Physcomitrella paten...   268   3e-70
tr|Q9M539|Q9M539_9LAMI Chlorophyll a/b-binding protein type I (F...   244   3e-63
tr|A8MS75|A8MS75_ARATH Uncharacterized protein At3g54890.4 OS=Ar...   233   1e-59
tr|Q3E725|Q3E725_ARATH Uncharacterized protein At3g54890.2 OS=Ar...   219   1e-55
tr|Q14K86|Q14K86_PLAAC Chlorophyll a/b-binding protein, photosys...   195   2e-48
tr|Q6V8T3|Q6V8T3_MALDO Chlorophyll a/b-binding protein type I (F...   194   4e-48
tr|Q3EAJ6|Q3EAJ6_ARATH Uncharacterized protein At3g54890.3 OS=Ar...   190   9e-47
tr|A2SY12|A2SY12_MESVI Light-harvesting chlorophyll-a/b binding ...   163   1e-38
tr|Q9FVE3|Q9FVE3_CHLRE Chlorophyll A-B binding protein of LHCI O...   149   2e-34
tr|Q7DM26|Q7DM26_CHLRE Light harvesting complex protein I-20 OS=...   149   2e-34
tr|Q05093|Q05093_CHLRE Light harvesting complex I protein (Light...   149   2e-34

>tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  291 bits (744), Expect = 4e-77
 Identities = 145/213 (68%), Positives = 156/213 (73%)
 Frame = +1

Query: 13  SPAFTPGAFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKES 192
           SP  +      NGSR+SMSAEW+PGQPRPAHLDGS+PGDFGFDPLGL  VPEN ERYKES
Sbjct: 29  SPTNSLSLGVCNGSRVSMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKES 88

Query: 193 ELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXX 372
           ELIHCRWAMLAVPGVL+PEALGLGNWV+AQKWAA PGGQATYLG PVPWG  P       
Sbjct: 89  ELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFF 148

Query: 373 XXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFS 552
                   QRN E D EKRKYPGG FDPLGFSK+P            NGRLALLAFVGF 
Sbjct: 149 LKMAFAESQRNGEPDLEKRKYPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFC 208

Query: 553 VQAAALPGTGPLEKLFTHLCQPMAQKTLQKIVI 651
           VQA+A PGTGPLE L THL  P   K + +I+I
Sbjct: 209 VQASANPGTGPLENLATHLSDPW-HKNIAEIII 240


>tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  289 bits (740), Expect = 1e-76
 Identities = 144/213 (67%), Positives = 155/213 (72%)
 Frame = +1

Query: 13  SPAFTPGAFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKES 192
           SP  +      NGSR+SMSAEW+PGQPRP HLDGS+PGDFGFDPL L  VPEN ERYKES
Sbjct: 29  SPTNSLSLGVCNGSRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKES 88

Query: 193 ELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXX 372
           ELIHCRWAMLAVPGVL+PEALGLGNWV+AQKWAA PG QATYLG PVPWG LP       
Sbjct: 89  ELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVEF 148

Query: 373 XXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFS 552
                   QRN E DPEKRKYPGG FDPLGFSK+P            NGRLALLAFVGF 
Sbjct: 149 LSIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFC 208

Query: 553 VQAAALPGTGPLEKLFTHLCQPMAQKTLQKIVI 651
           VQA+A PGTGPLE L THL  P   K + +I+I
Sbjct: 209 VQASANPGTGPLENLATHLSDPW-HKNIAEIII 240


>tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza
           sativa GN=Cab26 PE=2 SV=1
          Length = 241

 Score =  288 bits (737), Expect = 2e-76
 Identities = 135/195 (69%), Positives = 149/195 (76%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A+ +   R++MSAEW+PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 31  AYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRW 90

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AMLAVPGVL+PEALGLGNWV AQ+WAA PGGQATYLGNPVPWG LP              
Sbjct: 91  AMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAE 150

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFSK+P            NGRLA+LAFVGF VQ +A P
Sbjct: 151 HQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L +HL  P
Sbjct: 211 GTGPLENLASHLSDP 225


>tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subsp.
           japonica GN=P0578B12.4 PE=2 SV=1
          Length = 241

 Score =  288 bits (737), Expect = 2e-76
 Identities = 135/195 (69%), Positives = 149/195 (76%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A+ +   R++MSAEW+PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 31  AYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRW 90

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AMLAVPGVL+PEALGLGNWV AQ+WAA PGGQATYLGNPVPWG LP              
Sbjct: 91  AMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAE 150

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFSK+P            NGRLA+LAFVGF VQ +A P
Sbjct: 151 HQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 210

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L +HL  P
Sbjct: 211 GTGPLENLASHLSDP 225


>tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  287 bits (734), Expect = 5e-76
 Identities = 143/213 (67%), Positives = 154/213 (72%)
 Frame = +1

Query: 13  SPAFTPGAFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKES 192
           SP  +      NGSR+SMS EW+PGQPRP HLDGS+PGDFGFDPL L  VPEN ERYKES
Sbjct: 29  SPTNSLSLGVCNGSRVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKES 88

Query: 193 ELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXX 372
           ELIHCRWAMLAVPGVL+PEALGLGNWV+AQKWAA PG QATYLG PVPWG LP       
Sbjct: 89  ELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVEF 148

Query: 373 XXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFS 552
                   QRN E DPEKRKYPGG FDPLGFSK+P            NGRLALLAFVGF 
Sbjct: 149 LSIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFC 208

Query: 553 VQAAALPGTGPLEKLFTHLCQPMAQKTLQKIVI 651
           VQA+A PGTGPLE L THL  P   K + +I+I
Sbjct: 209 VQASANPGTGPLENLATHLSDPW-HKNIAEIII 240


>tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22755 PE=4 SV=1
          Length = 241

 Score =  286 bits (731), Expect = 1e-75
 Identities = 134/195 (68%), Positives = 148/195 (75%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A+ +   R++MSAEW+PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 31  AYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRW 90

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AMLAVPGVL+PEALGLGNWV AQ+WAA PGGQATYLGNPVPWG LP              
Sbjct: 91  AMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAE 150

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFSK+P            NGRLA+LAFV F VQ +A P
Sbjct: 151 HQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYP 210

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L +HL  P
Sbjct: 211 GTGPLENLASHLSDP 225


>tr|Q40512|Q40512_TOBAC Photosystem I light-harvesting chlorophyll
           a/b-binding protein OS=Nicotiana tabacum GN=LHCI PE=2
           SV=1
          Length = 245

 Score =  284 bits (726), Expect = 4e-75
 Identities = 138/206 (66%), Positives = 151/206 (73%)
 Frame = +1

Query: 1   KFLGSPAFTPGAFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFER 180
           KF  +     GA + N SR SMSAEW+PGQPRP +LDGS+PGDFGFDPLGL EVP N ER
Sbjct: 25  KFAVAVPVCVGAVSGN-SRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLER 83

Query: 181 YKESELIHCRWAMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXX 360
           YKESELIHCRWAMLAVPG+L+PEALGLGNWV AQ+WAA PGGQATYLG PVPWG LP   
Sbjct: 84  YKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTIL 143

Query: 361 XXXXXXXXXXXXQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAF 540
                       QR+ EKDPEK+KYPGG FDPLG+SK+P            NGRLALLAF
Sbjct: 144 AIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAF 203

Query: 541 VGFSVQAAALPGTGPLEKLFTHLCQP 618
           VGF VQ +A PGTGPLE L THL  P
Sbjct: 204 VGFCVQQSAYPGTGPLENLATHLADP 229


>tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 245

 Score =  283 bits (723), Expect = 1e-74
 Identities = 133/195 (68%), Positives = 147/195 (75%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A  +   R++MSAEW+PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 35  ANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRW 94

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AMLAVPG+L+PEALGLGNWV AQ+WAA PGGQATYLG PVPWG LP              
Sbjct: 95  AMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAE 154

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFSK+P            NGRLA+LAFVGF VQ +A P
Sbjct: 155 HQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 214

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L +HL  P
Sbjct: 215 GTGPLENLASHLADP 229


>tr|Q02069|Q02069_PINSY Type 1 chlorophyll a /b-binding protein
           OS=Pinus sylvestris GN=lhaA1 PE=2 SV=1
          Length = 246

 Score =  282 bits (722), Expect = 1e-74
 Identities = 136/201 (67%), Positives = 149/201 (74%)
 Frame = +1

Query: 46  NGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRWAMLA 225
           +GSR+SMSAEW+PGQPRP HLDGS+PGDFGFDPL L  +PEN ERYKESELIHCRWAMLA
Sbjct: 39  HGSRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLA 98

Query: 226 VPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXXXQRN 405
           VPG+L+PEALGLGNWV+AQKWAA PG QATY G PVPWG LP               QRN
Sbjct: 99  VPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRN 158

Query: 406 YEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALPGTGP 585
            E DPEKRKYPGG FDPLGFSK+P            NGRLALLAFVGF VQA+A PGTGP
Sbjct: 159 GEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGP 218

Query: 586 LEKLFTHLCQPMAQKTLQKIV 648
           LE L THL  P  +   + I+
Sbjct: 219 LENLATHLSDPWHRNIAEIII 239


>tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 249

 Score =  282 bits (722), Expect = 1e-74
 Identities = 133/195 (68%), Positives = 146/195 (74%)
 Frame = +1

Query: 34  AFTSNGSRLSMSAEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFERYKESELIHCRW 213
           A  +   R++MSAEW+PGQPRPAHLDGSSPGDFGFDPLGLA VPENFER+KESE+ HCRW
Sbjct: 39  AHATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRW 98

Query: 214 AMLAVPGVLLPEALGLGNWVDAQKWAATPGGQATYLGNPVPWGNLPXXXXXXXXXXXXXX 393
           AMLAVPGVL+PEALGLGNWV AQ+WAA PGGQATYLG PVPWG LP              
Sbjct: 99  AMLAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAE 158

Query: 394 XQRNYEKDPEKRKYPGGPFDPLGFSKNPXXXXXXXXXXXXNGRLALLAFVGFSVQAAALP 573
            QR  EKDPEK+KYPGG FDPLGFS++P            NGRLA+LAFVGF VQ +A P
Sbjct: 159 HQRTMEKDPEKKKYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 218

Query: 574 GTGPLEKLFTHLCQP 618
           GTGPLE L  HL  P
Sbjct: 219 GTGPLENLAAHLADP 233