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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944647
Clone id YMU02A01NGRL0006_L21
Library
Length 381
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATTCTAGACCTATCCCTAAGTATAATCTTAGAATGTCTTACAGAACAATTATAGTAAAT
AGCCATTTCGTCAAGACTAGTTAAGGAGACCCTGGTAACACCTTTCAAGTGTCTTTCTGT
GGTTATGACCGCCTTGAATCTGTGCTGAATTGCTTCTGGTCATGCCATCCCAAACCCCTT
CTGCTTTTTTTCACGATGTCTTCAAGACATTCAAGCCATCTACCATTCTCGCGGAATTAT
TCTCTACATTCTCTCGGGCCACTTCACTTCTGTCTGTCGAGCTGTGCAACACTAGACTTG
TTATGATTGCGCCTCCTCTTCCGAGCCCCCCTTTACGGTCACAGATTGCAATGATGCTGG
GGTTGAGTTCATAGAGGCCTC
■■Homology search results ■■ -
sp_hit_id P34529
Definition sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans
Align length 63
Score (bit) 35.0
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944647|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L21, 5'
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis el...    35   0.11 
sp|A3LZS3|ATG9_PICST Autophagy-related protein 9 OS=Pichia stipi...    31   1.7  
sp|Q5ANC9|ATG9_CANAL Autophagy-related protein 9 OS=Candida albi...    30   2.8  
sp|Q6BW58|ATG9_DEBHA Autophagy-related protein 9 OS=Debaryomyces...    30   4.8  
sp|Q62728|PTN21_RAT Tyrosine-protein phosphatase non-receptor ty...    29   8.2  
sp|Q62136|PTN21_MOUSE Tyrosine-protein phosphatase non-receptor ...    29   8.2  
sp|A0KPG5|MUTS_AERHH DNA mismatch repair protein mutS OS=Aeromon...    29   8.2  

>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans
            GN=dcr-1 PE=1 SV=2
          Length = 1845

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 159  VMPSQTPSAFFHDV-FKTFKPSTILAELFSTFSRATSLLSVELCNTRLVMIAPPLPSPPL 335
            ++P   PS+ F D  F+TF    I       + +  SLL V+  +TRL ++ P + + P 
Sbjct: 833  ILPEWRPSSKFPDTHFETFNEYFIKKYKLEIYDQNQSLLDVDFTSTRLNLLQPRIQNQPR 892

Query: 336  RSQ 344
            RS+
Sbjct: 893  RSR 895


>sp|A3LZS3|ATG9_PICST Autophagy-related protein 9 OS=Pichia stipitis
           GN=ATG9 PE=3 SV=3
          Length = 916

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +1

Query: 22  YNLRMSYRTIIVNSHFVKTS*GDPGNTFQVS--FCGYDRLESV--LNCFWSCHPKPLLLF 189
           Y+   S R +   +H++ +S     +T +V   FC    L+ +  LN  +S    P +L+
Sbjct: 642 YDPEASLRYVSQFTHYLPSSWNRRLHTVEVKNEFCELYSLKIIIILNEIFSLILTPFILW 701

Query: 190 FTMSSRHSSHLPFSRNYSLHSLGPLHFC 273
           F  SS   + + F R YS+H  G  + C
Sbjct: 702 FRASSSSGAIIDFFREYSIHVDGLGYVC 729


>sp|Q5ANC9|ATG9_CANAL Autophagy-related protein 9 OS=Candida
           albicans GN=ATG9 PE=3 SV=1
          Length = 952

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +1

Query: 22  YNLRMSYRTIIVNSHFVKTS*GDPGNTFQVS--FCGYDRLESVL--NCFWSCHPKPLLLF 189
           Y+   S R +   +H++ +S     +T QV   FC    L+ ++  N   S    P +L+
Sbjct: 663 YDPEASLRYVAQFTHYLPSSWNKKLHTIQVKNEFCQLYCLKIIIIINEILSSVLTPFILW 722

Query: 190 FTMSSRHSSHLPFSRNYSLHSLGPLHFC 273
           F +S    + + F R YS+H  G  + C
Sbjct: 723 FKISHNSGNIIDFYREYSIHVDGLGYVC 750


>sp|Q6BW58|ATG9_DEBHA Autophagy-related protein 9 OS=Debaryomyces
           hansenii GN=ATG9 PE=3 SV=2
          Length = 905

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = +1

Query: 22  YNLRMSYRTIIVNSHFVKTS*GDPGNTFQVS--FCGYDRLESVL--NCFWSCHPKPLLLF 189
           Y+   S R +   +H++ +S     +T QV   FC    ++ ++  N   S    P +L+
Sbjct: 626 YDPEASLRYVSQFTHYLPSSWNGRLHTVQVKNEFCELFSMKIIIIINEILSLILTPFILW 685

Query: 190 FTMSSRHSSHLPFSRNYSLHSLGPLHFC 273
           F +S+   + + F R YS+H  G  + C
Sbjct: 686 FKVSNSSGAIIDFFREYSIHVDGLGYVC 713


>sp|Q62728|PTN21_RAT Tyrosine-protein phosphatase non-receptor type
           21 OS=Rattus norvegicus GN=Ptpn21 PE=2 SV=1
          Length = 1175

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 MSSRHSSHLPFSRNYSLHSLGP 261
           ++S  S+H PF+ NYS HS  P
Sbjct: 502 LASPQSAHYPFNLNYSFHSQAP 523


>sp|Q62136|PTN21_MOUSE Tyrosine-protein phosphatase non-receptor
           type 21 OS=Mus musculus GN=Ptpn21 PE=1 SV=1
          Length = 1176

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 MSSRHSSHLPFSRNYSLHSLGP 261
           ++S  S+H PF+ NYS HS  P
Sbjct: 502 LTSPQSAHYPFNLNYSFHSQSP 523


>sp|A0KPG5|MUTS_AERHH DNA mismatch repair protein mutS OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=mutS PE=3 SV=1
          Length = 860

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -3

Query: 337 RKGGLGRGGAIITSLVLHSSTDRSEVARENVENNSARMVDGLNVLKTS*KKAEGVWDGMT 158
           R GG+ R G       L    + +  +   +E    R++ G+N LK    K  G +  ++
Sbjct: 431 RDGGVIRDGFNQELDELRDLANGATASLARIEERE-RLLTGINTLKVGYNKVHGFYIEVS 489

Query: 157 RSNSAQIQGGHNHRKTLE 104
           R+NS  +   +  R+TL+
Sbjct: 490 RANSHLVPAHYIRRQTLK 507
tr_hit_id B6KPQ0
Definition tr|B6KPQ0|B6KPQ0_TOXGO Ankyrin repeat-containing protein OS=Toxoplasma gondii ME49
Align length 76
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944647|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_L21, 5'
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KPQ0|B6KPQ0_TOXGO Ankyrin repeat-containing protein OS=Toxo...    34   3.1  
tr|B6MLZ5|B6MLZ5_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|O86747|O86747_STRCO Putative uncharacterized protein SCO5652 ...    33   9.1  

>tr|B6KPQ0|B6KPQ0_TOXGO Ankyrin repeat-containing protein
           OS=Toxoplasma gondii ME49 GN=TGME49_120650 PE=4 SV=1
          Length = 845

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
 Frame = +3

Query: 147 ELLLVMPSQTPSAFFHDVFK-TFKPSTILAELFSTFSR----------ATSLLSVELCNT 293
           E+L  + S+TPS F H   + T K S+   E  +T S           ATS LSV   + 
Sbjct: 400 EILHFLSSRTPSCFLHSSSQITSKASSTRTESITTISERPSLPSSSSSATSPLSVGSSSP 459

Query: 294 RLVMIAPPLPSPPLRS 341
             V  + PLPS P +S
Sbjct: 460 SFVSSSAPLPSSPSQS 475


>tr|B6MLZ5|B6MLZ5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_84087 PE=4 SV=1
          Length = 199

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 88  DPGNTFQVSFCGYDRLESVLNCFWSCHPKPLLLFFTMSSRHS-SHLPFSRNYSLHSLGPL 264
           DPG     SF      +  L+ F    P P+L FF  S  HS S LPF    S+HS    
Sbjct: 27  DPGECCVRSFLINTCHDRFLHSFLPSFPPPILPFFLPSFIHSHSFLPF----SIHSFSHS 82

Query: 265 HFCLSS 282
           HF L S
Sbjct: 83  HFFLPS 88


>tr|O86747|O86747_STRCO Putative uncharacterized protein SCO5652
           OS=Streptomyces coelicolor GN=SCO5652 PE=4 SV=1
          Length = 135

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -2

Query: 200 DIVKKSRRGLGWHDQKQFSTDSRRS*PQKDT*KVLPGSP 84
           D  KK   GLGW    QFS DS  S P  DT  V+  +P
Sbjct: 16  DAAKKFFAGLGWELNAQFSDDSTASFPVSDTIVVMVHTP 54