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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944660
Clone id YMU02A01NGRL0006_M14
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_M14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGGAGCTGAACGACCGCAAGCGGCTCGCCACCAGCTATGCGAACACGGCGCGAGCCT
ATACCGTCACTTTTGGAACTTGCAAGTTTCCCCAGAATTTTACCGGCTGCCAAGATCTTG
CTAAGAAAACGAATGTGCCTTTCCTCACCGATGATCTGAAGATAGAGTGTGAAGGCAAGG
AGAAGTACAAGTGCGCATCCAATGTTTTCTGGAAGTGGTGAGAGGAGTTGTTGAATGGGC
TGGGTAGTTAGTTGCCTCTTGTTCATAACCAGATTGCTGAGCCCCCGGTTTCTTTGTCGA
AATTATATCAGATTTGGATGAATATAGATATGCTCTTTTCTGCTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P31093
Definition sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare
Align length 72
Score (bit) 130.0
E-value 2.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944660|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_M14, 5'
         (345 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, ch...   130   2e-30
sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, ch...   129   5e-30
sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, ch...   127   2e-29
sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, ch...    86   4e-17
sp|B1Y1G9|SYA_LEPCP Alanyl-tRNA synthetase OS=Leptothrix cholodn...    32   0.75 
sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3 OS=...    30   4.8  
sp|A4XW05|MOAA_PSEMY Molybdenum cofactor biosynthesis protein A ...    30   4.9  
sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 ...    29   6.3  
sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys tri...    29   6.4  
sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS...    29   8.3  
sp|Q9P6P3|PPK15_SCHPO Serine/threonine-protein kinase ppk15 OS=S...    29   8.3  
sp|A2SI90|SYA_METPP Alanyl-tRNA synthetase OS=Methylibium petrol...    29   8.3  
sp|Q63135|CRRY_RAT Complement regulatory protein Crry OS=Rattus ...    29   8.3  

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N,
           chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score =  130 bits (327), Expect = 2e-30
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KR ATS AN ARAYTV FG+CKFP NFTGCQDLAK+  VPF+TDDL+IECEGKE
Sbjct: 74  KELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKE 133

Query: 183 KYKCASNVFWKW 218
           K+KC SNVFWKW
Sbjct: 134 KFKCGSNVFWKW 145


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N,
           chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score =  129 bits (324), Expect = 5e-30
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKE
Sbjct: 41  KELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKE 100

Query: 183 KYKCASNVFWKW 218
           K+KC SNVFWKW
Sbjct: 101 KFKCGSNVFWKW 112


>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N,
           chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score =  127 bits (318), Expect = 2e-29
 Identities = 54/72 (75%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARA+TV FG+CKFP+NFTGCQDLAK+  VPF+++D+ +ECEGK+
Sbjct: 100 KELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKD 159

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 160 KYKCGSNVFWKW 171


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N,
           chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           K LN++KRLATSYAN AR+ TV  GTC+FP+NF GC++LA    V ++ +DLKIECEGK+
Sbjct: 67  KALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKD 126

Query: 183 KYKCAS 200
              C S
Sbjct: 127 AKSCGS 132


>sp|B1Y1G9|SYA_LEPCP Alanyl-tRNA synthetase OS=Leptothrix cholodnii
           (strain ATCC 51168 / LMG 8142 / SP-6) GN=alaS PE=3 SV=1
          Length = 875

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = -2

Query: 158 QIIGEERHIRFLSKILAAGKILGKLASSKSDGIGSRRVRIAGGEPLAVV 12
           +I G +  +R L K LAA K  GKLASS+ D + ++ V I G + LAVV
Sbjct: 731 RISGLQDQVRALEKELAALK--GKLASSQGDSLLAQTVDINGLKVLAVV 777


>sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3
           OS=Caenorhabditis elegans GN=gar-3 PE=1 SV=2
          Length = 611

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -1

Query: 321 SSKSDIIST---KKPGAQQSGYEQEATNYPAHSTTPLTTSR----KHWMRTCT 184
           S K D+ ST   K  G+ +    Q+   Y   S TP T+SR    K W+R CT
Sbjct: 301 SMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDSVTPCTSSRNSKRKSWLRNCT 351


>sp|A4XW05|MOAA_PSEMY Molybdenum cofactor biosynthesis protein A
           OS=Pseudomonas mendocina (strain ymp) GN=moaA PE=3 SV=1
          Length = 331

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 65  GIGSRRVRIAGGEPLAVVQLL 3
           G+G RR+RI GGEPL    LL
Sbjct: 60  GLGVRRIRITGGEPLVRKNLL 80


>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4
           OS=Mus musculus GN=Smad4 PE=2 SV=1
          Length = 551

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 306 IISTKKPGAQQSGYEQEATNYPAHSTTPLTTSR 208
           I S  +PG QQ+G+  + + Y  +STT  T SR
Sbjct: 239 IASGPQPGQQQNGFTAQPSTYHHNSTTTWTGSR 271


>sp|P36985|TXP11_PLETR Plectoxin-11 (Fragment) OS=Plectreurys
           tristis PE=1 SV=2
          Length = 79

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 108 CQDLAKKTNVPFLTDDLKIECEGKEKYKCASNV 206
           C    ++ NVPFL D+ +++C G ++Y C  N+
Sbjct: 15  CTFAEEQVNVPFLPDEREVKCIGWQEY-CRGNL 46


>sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4
           OS=Rattus norvegicus GN=Smad4 PE=2 SV=1
          Length = 552

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 306 IISTKKPGAQQSGYEQEATNYPAHSTTPLTTSR 208
           I S  +PG QQ+G+  +   Y  +STT  T SR
Sbjct: 240 IASGPQPGQQQNGFTAQPATYHHNSTTTWTGSR 272
tr_hit_id Q6XGX6
Definition tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center subunit N (Fragment) OS=Vitis vinifera
Align length 72
Score (bit) 132.0
E-value 7.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944660|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_M14, 5'
         (345 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center su...   132   7e-30
tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome...   132   7e-30
tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subs...   130   2e-29
tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza...   130   2e-29
tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Popul...   130   2e-29
tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Popul...   130   2e-29
tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus vulg...   130   3e-29
tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N O...   129   6e-29
tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N O...   129   7e-29
tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea...   126   5e-28
tr|B8LK70|B8LK70_PICSI Putative uncharacterized protein OS=Picea...   120   4e-26
tr|Q9AXJ2|Q9AXJ2_CHLRE PsaN OS=Chlamydomonas reinhardtii GN=psaN...    87   4e-16
tr|Q1WLU5|Q1WLU5_CHLIN Chloroplast photosystem I subunit N OS=Ch...    87   4e-16
tr|A8I835|A8I835_CHLRE Photosystem I reaction center subunit N O...    87   4e-16
tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I polypeptide OS...    82   1e-14
tr|Q017X3|Q017X3_OSTTA PSAN_VOLCA Photosystem I reaction centre ...    75   2e-12
tr|A3CFM0|A3CFM0_ORYSJ Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|Q7M1U9|Q7M1U9_ORYSA Photosystem I 9K protein (Fragment) OS=Or...    59   2e-07
tr|B8YAB7|B8YAB7_9POAL Chloroplast photosystem I subunit N (Frag...    53   9e-06
tr|A9BKZ2|A9BKZ2_9CRYP Putative uncharacterized protein OS=Crypt...    36   0.84 
tr|Q6UAP7|Q6UAP7_TETNG Class I helical cytokine receptor number ...    34   4.2  
tr|Q4SZB1|Q4SZB1_TETNG Chromosome undetermined SCAF11729, whole ...    33   5.4  

>tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center
           subunit N (Fragment) OS=Vitis vinifera GN=PsaN PE=2 SV=1
          Length = 85

 Score =  132 bits (333), Expect = 7e-30
 Identities = 58/72 (80%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAKK  VPFL++DL++ECEG++
Sbjct: 14  KELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRD 73

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 74  KYKCGSNVFWKW 85


>tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034797001
           PE=4 SV=1
          Length = 173

 Score =  132 bits (333), Expect = 7e-30
 Identities = 58/72 (80%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAKK  VPFL++DL++ECEG++
Sbjct: 102 KELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRD 161

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 162 KYKCGSNVFWKW 173


>tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0189400 PE=2 SV=1
          Length = 149

 Score =  130 bits (328), Expect = 2e-29
 Identities = 58/72 (80%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKE
Sbjct: 78  KELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKE 137

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 138 KYKCGSNVFWKW 149


>tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37722 PE=4 SV=1
          Length = 144

 Score =  130 bits (328), Expect = 2e-29
 Identities = 58/72 (80%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKE
Sbjct: 73  KELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKE 132

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 133 KYKCGSNVFWKW 144


>tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 172

 Score =  130 bits (328), Expect = 2e-29
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARA+TV FGTCKFP+NFTGCQDLAK+  VPF++DDL +ECEGK+
Sbjct: 101 KELNDKKRLATSGANFARAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKD 160

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 161 KYKCGSNVFWKW 172


>tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 172

 Score =  130 bits (328), Expect = 2e-29
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FGTCKFP+NFTGCQDLAK+  VPF+++DL +ECEGK+
Sbjct: 101 KELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLALECEGKD 160

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 161 KYKCGSNVFWKW 172


>tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus
           vulgaris GN=PSI-N PE=1 SV=1
          Length = 170

 Score =  130 bits (327), Expect = 3e-29
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLAT+ AN ARAYTV FG+CKFP+NFTGCQDLAK+  VPFL+DDL +ECEGK+
Sbjct: 99  KELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKD 158

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 159 KYKCGSNVFWKW 170


>tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  129 bits (325), Expect = 6e-29
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KR+ATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPFL+DDL+IECEGKE
Sbjct: 74  KELNDKKRMATSAANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFLSDDLEIECEGKE 133

Query: 183 KYKCASNVFWKW 218
           K+KC SNVFWKW
Sbjct: 134 KFKCGSNVFWKW 145


>tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  129 bits (324), Expect = 7e-29
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           KELND+KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  VPF++DDL+IECEGKE
Sbjct: 74  KELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKE 133

Query: 183 KYKCASNVFWKW 218
           K+KC SNVFWKW
Sbjct: 134 KFKCGSNVFWKW 145


>tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score =  126 bits (317), Expect = 5e-28
 Identities = 56/72 (77%), Positives = 63/72 (87%)
 Frame = +3

Query: 3   KELNDRKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTNVPFLTDDLKIECEGKE 182
           K LND+KRLATS AN ARAYTV FGTC+ P NFTGCQDLAK  NVPFL++D+K+ECEGK+
Sbjct: 102 KALNDKKRLATSGANIARAYTVQFGTCQVPYNFTGCQDLAKIKNVPFLSEDMKLECEGKD 161

Query: 183 KYKCASNVFWKW 218
           KYKC SNVFWKW
Sbjct: 162 KYKCGSNVFWKW 173