DK944665 |
Clone id |
YMU02A01NGRL0006_M21 |
Library |
YMU02 |
Length |
662 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_M21. 5' end sequence. |
Accession |
DK944665 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1698Contig1 |
Sequence |
GAAACATTTGTAGCCGGCCATCAAGGACCACAAACAACGTTAAGCTATGGCGTCGCTGAC GATCGGTAGCGCTTCGATGCTACAGGCCCGCCCCTATGCTCCGTCTTTAGTCGCGCCGTG CCGTCGTTCCTCTGCCCCAGCTAGACGTGCAAATGGCTGTGTATCTCTGTGTATACGTGC TGTCAAGCTGCCATCAGGGGTGGAGACTCCCAAGGAAGAGCCCAAGCTGCCAACTGCTCT GTGGGGCTTCACACAGAACGCAGAGCGATGGAACTCTCGGGCGGCCATGCTTGGTATCAT CGGCATTTTTCTTGTCGAATTGATCATCCAGAAGGGAATTTTGCAAGTGATAGGTTTTGA GGTTGGCAAGGGTCTCAACCTGCCATTGTAAATGGGAAAACTCGGTGAAAGGAGCTGCGT CTTGGTCTTTTATGTATGCAATTTAGCCGATTTGATGATGGGAAATGATTGGCTTAAACA CCATGTATTAAAGCCCTCGTGCAACTATTTCCAACTGCTGCAGTCAAGATGTAAATGAGC ACCTGTCCAGTTTTGTGACGAAGCCCTCTGATGTCAGCCGTTTCAGGATTGCACGTGTGG GATGATGTAAAGGATTCTTCTGTGAATGAACCGGTATTGGTTTTGGAAAAAAAAAAAAAA AA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1XDD2 |
Definition |
sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis |
Align length |
39 |
Score (bit) |
49.7 |
E-value |
1.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944665|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_M21, 5' (646 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra ... 50 1e-05 sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra ... 47 7e-05 sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor... 44 6e-04 sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (stra... 44 0.001 sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC ... 44 0.001 sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabido... 43 0.002 sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elong... 42 0.003 sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain... 42 0.003 sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (... 42 0.003 sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sa... 42 0.004 sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sa... 42 0.004 sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain... 40 0.010 sp|O78425|YCF17_GUITH Uncharacterized protein ycf17 OS=Guillardi... 40 0.014 sp|A5GJF5|HEMH_SYNPW Ferrochelatase OS=Synechococcus sp. (strain... 40 0.014 sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (s... 39 0.031 sp|Q3ALP2|HEMH_SYNSC Ferrochelatase OS=Synechococcus sp. (strain... 38 0.052 sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain... 38 0.052 sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain... 38 0.052 sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti... 37 0.068 sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti... 37 0.068 sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain... 37 0.068 sp|Q7V6C6|HEMH_PROMM Ferrochelatase OS=Prochlorococcus marinus (... 37 0.068 sp|A2C7Q7|HEMH_PROM3 Ferrochelatase OS=Prochlorococcus marinus (... 37 0.068 sp|Q46GQ1|HEMH_PROMT Ferrochelatase OS=Prochlorococcus marinus (... 37 0.089 sp|A2C0Y4|HEMH_PROM1 Ferrochelatase OS=Prochlorococcus marinus (... 37 0.12 sp|Q7VD58|HEMH_PROMA Ferrochelatase OS=Prochlorococcus marinus G... 36 0.20 sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti... 35 0.26 sp|Q10WR6|HEMH_TRIEI Ferrochelatase OS=Trichodesmium erythraeum ... 35 0.34 sp|A2BVI7|HEMH_PROM5 Ferrochelatase OS=Prochlorococcus marinus (... 34 0.75 sp|Q31C09|HEMH_PROM9 Ferrochelatase OS=Prochlorococcus marinus (... 33 0.98
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3 SV=1 Length = 48
Score = 49.7 bits (117), Expect = 1e-05 Identities = 19/39 (48%), Positives = 28/39 (71%) Frame = +2
Query: 239 LWGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 LWGFT +AE WN R AM+G I + +E++ +G+L +IG Sbjct: 7 LWGFTDSAETWNGRFAMIGFISVIFIEVVTGQGLLYLIG 45
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3 SV=1 Length = 48
Score = 47.4 bits (111), Expect = 7e-05 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WGFT +AE WN R AM+G + + +EL+ KG+L + G Sbjct: 8 WGFTDSAETWNGRFAMIGFMAVIFIELVTGKGLLYLSG 45
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3 SV=1 Length = 49
Score = 44.3 bits (103), Expect = 6e-04 Identities = 19/38 (50%), Positives = 22/38 (57%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WGFT AE WN R AMLG I L E + +G L +G Sbjct: 10 WGFTSGAENWNGRLAMLGFIAALLTESLTGQGTLHFLG 47
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemH PE=3 SV=1 Length = 388
Score = 43.5 bits (101), Expect = 0.001 Identities = 19/38 (50%), Positives = 27/38 (71%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG T +AE WN R AMLG I + ++EL+ +G+L +IG Sbjct: 349 WGMTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHMIG 385
>sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC 7120) GN=hemH PE=3 SV=1 Length = 388
Score = 43.5 bits (101), Expect = 0.001 Identities = 19/38 (50%), Positives = 27/38 (71%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG T +AE WN R AMLG I + ++EL+ +G+L +IG Sbjct: 349 WGMTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHMIG 385
>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1 Length = 512
Score = 42.7 bits (99), Expect = 0.002 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG+T++AE WN RAAML ++ + ++E+ KG L G Sbjct: 470 WGWTKSAETWNGRAAMLAVLALLVLEVTTGKGFLHQWG 507
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemH PE=3 SV=2 Length = 388
Score = 42.0 bits (97), Expect = 0.003 Identities = 19/38 (50%), Positives = 26/38 (68%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG T AERWN R AMLG + + ++ELI +G L ++G Sbjct: 350 WGMTSAAERWNGRLAMLGFLAL-MIELISGQGPLHMLG 386
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemH PE=3 SV=1 Length = 387
Score = 42.0 bits (97), Expect = 0.003 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG T NAE WN R AMLG + + LVEL+ +G L +G Sbjct: 349 WGITLNAEVWNGRIAMLGFLAL-LVELLTGRGPLHALG 385
>sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (strain PCC 7942) GN=hemH PE=3 SV=1 Length = 387
Score = 42.0 bits (97), Expect = 0.003 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = +2
Query: 242 WGFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 WG T NAE WN R AMLG + + LVEL+ +G L +G Sbjct: 349 WGITLNAEVWNGRIAMLGFLAL-LVELLTGRGPLHALG 385
>sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMH PE=2 SV=1 Length = 526
Score = 41.6 bits (96), Expect = 0.004 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Frame = +2
Query: 185 KLPSGVETPKEEPKLPTALW--GFTQNAERWNSRAAMLGIIGIFLVELIIQKGILQVIG 355 +L + ++ ++E P +W G+T++AE WN RAAML ++ + ++E+ +G L G Sbjct: 462 ELLAAYDSKRDELPPPVTVWEWGWTKSAETWNGRAAMLAVLALLVLEVTTGEGFLHQWG 520
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RJ26 |
Definition |
tr|A9RJ26|A9RJ26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
111.0 |
E-value |
4.0e-23 |
Report |
|