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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944668
Clone id YMU02A01NGRL0006_M24
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_M24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTCACAGAACTCCCTCACGTTCCTTTGCTTCGAAACGAGGGTAGGCACACCAGACACAA
AATTGAGTGATGCGTAATACGGACGGAGGTTCGAATCCTCGCAAGGCGTCCGGAACAAAA
GTCGTCTTGCATTTCCGGAATAAGTCTCCCGACCCCTTGCTTTCCACCAAGAGAAAGCAA
AAAGAACCCGGGCGGGAAAGTTTGATTTGGTCAATCTCCTTGCCCCTCCGAACTAAGTGG
CGACGAAACCGATCTTCGTATCGAGATGCGGGTGGGTCCTGTTGCTTCGGTGTCCCCCGA
AGCTAAATCTATCAAAAGAAAAAGGAAATCCTTGGGAAATTTAATATTCCCTAGTACCAA
TCCGTAAAAATGGAATGTAAATCCTGGGATTGTTGACTACTAAGAGTCTCTCTTATCATT
CTATGGAGTTTCCATAGATAGGTAAGGTCGTAAGTCCCACCTTTTCTATTTTCCCCTCTC
CAAACCAAGGGTGGGGCGGCAAAGAAGATATTGGGTCTCGCCCCAATGCGGCACTCAAAG
AATAGTCTTACGGGATAGAGAAGAAGGAGGGGTAGGAAGTGGCGGCTT
■■Homology search results ■■ -
sp_hit_id Q68XF6
Definition sp|Q68XF6|QUEA_RICTY S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Rickettsia typhi
Align length 34
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944668|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_M24, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68XF6|QUEA_RICTY S-adenosylmethionine:tRNA ribosyltransferas...    32   2.4  
sp|Q9ZDV6|QUEA_RICPR S-adenosylmethionine:tRNA ribosyltransferas...    32   3.1  
sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=m...    31   4.0  
sp|A8GVG9|QUEA_RICB8 S-adenosylmethionine:tRNA ribosyltransferas...    31   4.0  
sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacteri...    31   5.2  
sp|Q1RI29|QUEA_RICBR S-adenosylmethionine:tRNA ribosyltransferas...    31   5.3  
sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290 O...    30   6.8  
sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis ...    30   6.8  
sp|A8GR69|QUEA_RICRS S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|B0BWL5|QUEA_RICRO S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|Q4UMM7|QUEA_RICFE S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|Q92IY7|QUEA_RICCN S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|A8EXV6|QUEA_RICCK S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|A8GMK3|QUEA_RICAH S-adenosylmethionine:tRNA ribosyltransferas...    30   6.9  
sp|Q6C8W4|PLPL_YARLI Patatin-like phospholipase domain-containin...    30   8.9  
sp|Q6PJG2|CN043_HUMAN Uncharacterized protein C14orf43 OS=Homo s...    30   9.0  

>sp|Q68XF6|QUEA_RICTY S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia typhi GN=queA
           PE=3 SV=1
          Length = 375

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASGDTE 286
           PGF F    ++L N  FPK  LF+LI   +G  E
Sbjct: 314 PGFNFQIVDMLLTNFHFPKSTLFILICAFAGFKE 347


>sp|Q9ZDV6|QUEA_RICPR S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia prowazekii
           GN=queA PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASGDTE 286
           PGF F    ++L N  FPK  LF+LI   +G  E
Sbjct: 322 PGFNFQVVDMLLTNFHFPKSTLFILICAFAGFKE 355


>sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=mtbp
           PE=2 SV=1
          Length = 860

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -2

Query: 278 DPPA-SRYEDRFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 108
           +PPA  R   ++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 335 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----LCKATLLHS 390

Query: 107 ALRGFEPPSVLRITQ 63
           A +     S+L + Q
Sbjct: 391 ASQISGAASLLLLHQ 405


>sp|A8GVG9|QUEA_RICB8 S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia bellii
           (strain OSU 85-389) GN=queA PE=3 SV=1
          Length = 353

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASGDTE 286
           PGF F    ++L N  FPK  LF+L+   +G  E
Sbjct: 292 PGFKFQIVDMLLTNFHFPKSTLFMLVCAFAGFKE 325


>sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacterium
           acnes GN=PPA1495 PE=3 SV=1
          Length = 178

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 131 ISGISLPTPCFPPRESKKNPGGKV*FGQSPCPSELSGDETDLRIEMRVGPVASVSPEAKS 310
           +S   + TP   PR  ++N G  V F  +P   + SG+  D RI      V ++  EA++
Sbjct: 80  VSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGRIAEAGEEVVTLEVEAEN 139

Query: 311 IK 316
            K
Sbjct: 140 SK 141


>sp|Q1RI29|QUEA_RICBR S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia bellii
           (strain RML369-C) GN=queA PE=3 SV=1
          Length = 353

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASG 295
           PGF F    ++L N  FPK  LF+L+   +G
Sbjct: 292 PGFKFQIVDMLLTNFHFPKSTLFMLVCAFAG 322


>sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_058290 PE=3 SV=1
          Length = 527

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 161 FPPRESKKNPGGKV*FGQSPCPSELSGDETDL---RIEMRVGPVASVSPEAK 307
           FPP+ ++ +PGG     + P P ++  ++ DL   R+  R+  +A+ S  AK
Sbjct: 38  FPPKSARSSPGGLTKPKKKPAPKKVKKEDEDLVPRRMSSRLRGLAADSEVAK 89


>sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis
           GN=mtbp PE=2 SV=2
          Length = 867

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 278 DPPA-SRYEDRFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 108
           +PPA  R   ++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 339 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----FCKATLLHS 394

Query: 107 A 105
           A
Sbjct: 395 A 395


>sp|A8GR69|QUEA_RICRS S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia rickettsii
           (strain Sheila Smith) GN=queA PE=3 SV=1
          Length = 365

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASGDTE 286
           PGF F    ++L N  FPK  LF+LI   +G  E
Sbjct: 305 PGFKFQTADMLLTNFHFPKSTLFMLICAFAGFKE 338


>sp|B0BWL5|QUEA_RICRO S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Rickettsia rickettsii
           (strain Iowa) GN=queA PE=3 SV=1
          Length = 365

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 387 PGFTFHFYGLVLGNIKFPKDFLFLLIDLASGDTE 286
           PGF F    ++L N  FPK  LF+LI   +G  E
Sbjct: 305 PGFKFQTADMLLTNFHFPKSTLFMLICAFAGFKE 338
tr_hit_id B1KL00
Definition tr|B1KL00|B1KL00_SHEWM Putative uncharacterized protein OS=Shewanella woodyi (strain ATCC 51908 / MS32)
Align length 122
Score (bit) 35.4
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944668|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_M24, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1KL00|B1KL00_SHEWM Putative uncharacterized protein OS=Shewa...    35   2.4  
tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. ...    35   2.4  
tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein OS=Asper...    35   2.4  
tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodo...    35   2.4  
tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein OS=Toxop...    35   4.1  
tr|A2E6S2|A2E6S2_TRIVA Putative uncharacterized protein OS=Trich...    34   5.4  
tr|Q07YM3|Q07YM3_SHEFN ATP synthase A chain OS=Shewanella frigid...    34   7.0  
tr|B6KD79|B6KD79_TOXGO Putative uncharacterized protein OS=Toxop...    34   7.0  

>tr|B1KL00|B1KL00_SHEWM Putative uncharacterized protein
           OS=Shewanella woodyi (strain ATCC 51908 / MS32)
           GN=Swoo_4556 PE=3 SV=1
          Length = 457

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 29/122 (23%), Positives = 53/122 (43%)
 Frame = +2

Query: 110 PEQKSSCISGISLPTPCFPPRESKKNPGGKV*FGQSPCPSELSGDETDLRIEMRVGPVAS 289
           P++K+S   G+ LP P     + K+  GG+       C +  +G       ++++ P A 
Sbjct: 186 PDEKASITGGVPLPEPVLTLSDGKRLRGGEA------CAALKTGQ------QLKIDPNAL 233

Query: 290 VSPEAKSIKRKRKSLGNLIFPSTNP*KWNVNPGIVDY*ESLLSFYGVSIDR*GRKSHLFY 469
                K +  + ++     +P+TNP  W +        E LLS Y     + GR+S   +
Sbjct: 234 NISAEKYVALRDQADKPATWPATNPSSWYIQYDR----EFLLSMYSGEKVKMGRRSEGGF 289

Query: 470 FP 475
           +P
Sbjct: 290 YP 291


>tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_1187 PE=4 SV=1
          Length = 243

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
 Frame = -3

Query: 229 GGARRLTKSNFPAR---VLFAFSWWKARGRETYSGNARRLLFRTPCEDSNLRPYYASLNF 59
           G    +  S FP +    L   SW  + GRET +G   R LF    E     PY+  L  
Sbjct: 66  GNHELMMLSAFPQQSEHTLHLLSWLSSGGRETIAGYTSRDLFLEHMEWMQTLPYFLDLGD 125

Query: 58  V----SGV-PTLVSKQRNVREFC 5
           +    +GV PTL   ++   EFC
Sbjct: 126 IWLVHAGVEPTLPLAEQTTEEFC 148


>tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_026330 PE=4 SV=1
          Length = 577

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 524 GARPNIFFAAPPLVWRGENRKGGTYDLTYLWKLHRMIRETLSSQQSQDLHSIFTDWY*GI 345
           G+RP + FA  P+  +G N  G  Y L Y W+L   +  + +     D+  I+  W  G+
Sbjct: 168 GSRPQLLFAVLPIADKGANFSGKHYVLCYDWRLRTFLARSFNWLPG-DIRDIWAVWSEGL 226

Query: 344 ----LNFPRI 327
               +  PR+
Sbjct: 227 TVYTITIPRL 236


>tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB12581 PE=4 SV=1
          Length = 174

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 127 LHFRNKSPDPLLSTKRKQKEPGRESLIWSISLPLRTKWRRN 249
           L  RN+SP+PLL T  + K   R  + W+    +R  WR +
Sbjct: 133 LDARNRSPNPLLKTSWRMKANSRSRITWTPKTKIRDGWRNS 173


>tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_053930 PE=4 SV=1
          Length = 1857

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 128 CISGISLPTPCFPPRESKKNPGGKV*FGQSPCP 226
           C+ G S PTPC P    +  PGG+   G SPCP
Sbjct: 52  CLEGASEPTPC-PAGTFRDQPGGEALDGCSPCP 83


>tr|A2E6S2|A2E6S2_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_158930 PE=4 SV=1
          Length = 187

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 202 LIWSISLPLRTKWRRNRS-SYRDAGGSCCFGVPRS*IYQKKKEILGKFN 345
           +IWS++ P    WR +    Y D G   CF    S I+  K   LGKFN
Sbjct: 131 MIWSVNFPNSILWRTDAMLRYADWGKIACFSKLTSGIHYSKYITLGKFN 179


>tr|Q07YM3|Q07YM3_SHEFN ATP synthase A chain OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=Sfri_3053 PE=3 SV=1
          Length = 246

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = -2

Query: 281 QDPPASRYEDRFRRHLVRRGKEIDQIKLSRPGSFCFLLVESKGSGDLFRKCKTTFVPDAL 102
           +D   SR+++     ++   K+I+++ LS P  +   L      G LF    T+ +   +
Sbjct: 45  KDMQRSRWQNLLEVVVITISKQIEEVGLSNPHKYLGFL------GSLFLFIATSAICTVI 98

Query: 101 RGFEPP----SVLRITQFCVWCAYPRFEAKEREGV 9
            GFEPP    S       CV+ A P F   E++G+
Sbjct: 99  PGFEPPTGSLSSTVALALCVFVAVPMF-GIEKQGL 132


>tr|B6KD79|B6KD79_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_071360 PE=4 SV=1
          Length = 464

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 113 EQKSSCISGISLPTPCFPPRESKKNPGGKV*FGQSPCPSELSGDETDLRIEMRVGPVASV 292
           E +  C+S  + P+   P   SK   GG    G+  C +  +  ET  R   R  P+AS+
Sbjct: 46  ELQKQCLSSSAAPSFSSPFSSSKPASGGSKRSGRRRCGAGAA--ETAERPSARAAPLASL 103

Query: 293 SPEAKSIKR 319
           SP A ++ R
Sbjct: 104 SPAASALSR 112