DK944670
Clone id YMU02A01NGRL0006_N02
Library
Length 206
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_N02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AGTATTGCAGTGCATTTTTCTCTCTCACTACAGCAGGCAGTGCTGAGGAATGTCAGCTTT
GGCATGTAACAGGGAACATGCACATGGGCATTGATGAGAAGTGTGTGTCCTCCCCTTGGC
CGTCTTTGTATGTTGGTTTATACTCTTTAAAGTATATGTTCAAGTGATGATTCCACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5VRD1
Definition sp|Q5VRD1|IAA1_ORYSJ Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica
Align length 29
Score (bit) 28.9
E-value 8.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944670|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N02, 5'
(176 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5VRD1|IAA1_ORYSJ Auxin-responsive protein IAA1 OS=Oryza sati... 29 8.3
sp|Q6AT10|IAA15_ORYSJ Auxin-responsive protein IAA15 OS=Oryza sa... 29 8.3

>sp|Q5VRD1|IAA1_ORYSJ Auxin-responsive protein IAA1 OS=Oryza sativa
subsp. japonica GN=IAA1 PE=2 SV=1
Length = 199

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2

Query: 145 EYKPTYKDGQGEDTHFSSMPMCMFPVTCQ 59
EY PTY+D G+ +P MF TCQ
Sbjct: 152 EYVPTYEDKDGDWMLVGDVPWKMFVETCQ 180


>sp|Q6AT10|IAA15_ORYSJ Auxin-responsive protein IAA15 OS=Oryza
sativa subsp. japonica GN=IAA15 PE=2 SV=1
Length = 212

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2

Query: 145 EYKPTYKDGQGEDTHFSSMPMCMFPVTCQ 59
EY PTY+D G+ +P MF TCQ
Sbjct: 166 EYVPTYEDKDGDWMLVGDVPWKMFVETCQ 194


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944670|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N02, 5'
(176 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******