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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944676
Clone id YMU02A01NGRL0006_N12
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_N12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGCTCAGGCCACAGCACCGCTCTCTTCTCCTGAGCATTCTCTCTTCTGCAGGACGATTGT
AGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAAGCAATGGCGACCATGTCTGCGTCTCTAG
CAGTGAGCGCCCCGGGATGTGCCCCAGCAGAGCTGAGCCTCTCACAGAAGAGCTTCTCGG
GCCTCAAGGCCTCCACCATCGTCGCGCCCAAGTGTGGCAATCCCCTCGCCGTTTCCAATG
GCAGCCGTGTCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTCGAGACTC
TGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGGTGC
GACAGAACTTTACTCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGCACT
TCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGTTTG
GCTGCACCGACTCCGCCGCCGTGCTGCGCGAGATCACGGAGTGCGCCAAGGAGTACCCCA
AGGCATTCATCCGGGTGCTCGGCTTCGATGCCAAGCGGCAAGCTCAGGTTGCTGGCTTCC
TTGTCCAGA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 175
Score (bit) 181.0
E-value 2.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944676|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N12, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   181   3e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   179   1e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   177   3e-44
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   177   4e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   176   6e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   176   6e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   174   2e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   173   5e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   173   5e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   173   7e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   172   9e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   172   9e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   171   3e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   170   6e-42
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   170   6e-42
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   169   8e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   169   8e-42
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   169   8e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   168   2e-41
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   168   2e-41

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  181 bits (460), Expect = 2e-45
 Identities = 94/175 (53%), Positives = 117/175 (66%), Gaps = 9/175 (5%)
 Frame = +3

Query: 105 MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 260
           M+ S+  SA   A +  S +Q S    F+ LK+++   V  K  N +    SNG RV  M
Sbjct: 1   MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 261 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 437
            VW P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQ Q+  F+
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFI 175


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  181 bits (458), Expect = 3e-45
 Identities = 91/175 (52%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 96  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 263
           MA++S+S   +       + SL+   F+GLK++    V  K  N  +   SNG RV  M 
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 440
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 441 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQ Q   F+V
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIV 174


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  179 bits (453), Expect = 1e-44
 Identities = 88/171 (51%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
 Frame = +3

Query: 105 MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 272
           M++S+  SA   A    +     F+GLK+S       K  N +    SNG RV+ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 273 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 449
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 450 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQ Q   F+
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFI 171


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  177 bits (450), Expect = 3e-44
 Identities = 94/175 (53%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
 Frame = +3

Query: 96  MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 263
           MA++ AS AV  P  A A  +          +GLKA              +NGSRVS M 
Sbjct: 1   MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 264 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 443
           VW+PY+N KFETLSYLP LS + +AKQ+DY+++  + PCIEFD  G+V RE     GYYD
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQAQVAGFLV 605
           GRYW MWKLPMFGCTDSA+VLREI EC K Y  K +IR LGFD  RQ Q A F+V
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIV 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  177 bits (450), Expect = 3e-44
 Identities = 90/170 (52%), Positives = 116/170 (68%), Gaps = 5/170 (2%)
 Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
              KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQ Q   F+
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 171


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  177 bits (449), Expect = 4e-44
 Identities = 90/170 (52%), Positives = 115/170 (67%), Gaps = 5/170 (2%)
 Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
           S+  + +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQ Q   F+
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 171


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  176 bits (447), Expect = 6e-44
 Identities = 90/170 (52%), Positives = 115/170 (67%), Gaps = 5/170 (2%)
 Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K    +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQ Q   F+
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 171


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  176 bits (447), Expect = 6e-44
 Identities = 89/170 (52%), Positives = 115/170 (67%), Gaps = 5/170 (2%)
 Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
           S+ L+ +A   +PA+ ++    F+GLK+S+   V  K  N +   VSNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQ Q   F+
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFI 171


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  174 bits (442), Expect = 2e-43
 Identities = 88/179 (49%), Positives = 118/179 (65%), Gaps = 8/179 (4%)
 Frame = +3

Query: 93  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKA-----STIVAPKCG---NPLAVSNGSR 248
           A+++ +A  AV+AP        +S  +F+GLK+     S+      G        SNGSR
Sbjct: 7   ALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSR 64

Query: 249 VSAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG 428
           V  M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++  + PC+EF+  G + R + + 
Sbjct: 65  VRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNS 124

Query: 429 SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
            GYYDGRYWVMWKLPMFGCT+++ VL E+ ECAK YP AFIRV+GFD  RQ Q   F+V
Sbjct: 125 PGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIV 183


>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain
           F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1
          Length = 181

 Score =  174 bits (442), Expect = 2e-43
 Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 5/170 (2%)
 Frame = +3

Query: 108 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 275
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPP 61

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 452
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 453 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFL 602
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQ Q   F+
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFI 171
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 171
Score (bit) 296.0
E-value 8.0e-79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944676|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N12, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   296   8e-79
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   207   4e-52
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   206   1e-51
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   203   5e-51
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   202   9e-51
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   202   1e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   201   3e-50
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   190   5e-47
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   189   8e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   177   6e-43
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   176   1e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  296 bits (757), Expect = 8e-79
 Identities = 141/171 (82%), Positives = 156/171 (91%)
 Frame = +3

Query: 96  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 275
           MATM A++AVSAP CA A  SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 276 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 455
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 456 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLVQ 608
           +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQ QVAGFLV+
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVK 170


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  207 bits (527), Expect = 4e-52
 Identities = 101/174 (58%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
 Frame = +3

Query: 93  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 272
           A A +S S+  +A   A    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 273 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 443
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLV 175


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  206 bits (523), Expect = 1e-51
 Identities = 100/174 (57%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
 Frame = +3

Query: 93  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 272
           A A +S S+  +A   +    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 273 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 443
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 444 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLV 175


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  203 bits (517), Expect = 5e-51
 Identities = 98/167 (58%), Positives = 119/167 (71%), Gaps = 3/167 (1%)
 Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
           SL  +A   A +  S + K+FSGLK +T+ + K     AV NGSRV  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLV 180


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  202 bits (515), Expect = 9e-51
 Identities = 97/167 (58%), Positives = 119/167 (71%), Gaps = 3/167 (1%)
 Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
           S+ V++   A +  S S K+FSGLK++T+   K     +V NGSRV  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
           ET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           KLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLV 180


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  202 bits (514), Expect = 1e-50
 Identities = 102/176 (57%), Positives = 128/176 (72%), Gaps = 6/176 (3%)
 Frame = +3

Query: 96  MATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLV 266
           ++T+ A +A+  A  C  AP+E S S K+FSGLK++T+ + K     +V NGSRV  M V
Sbjct: 36  VSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQV 94

Query: 267 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGY 437
           W P    KFET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGY
Sbjct: 95  WNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGY 154

Query: 438 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           YDGRYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 155 YDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLV 210


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  201 bits (511), Expect = 3e-50
 Identities = 96/167 (57%), Positives = 121/167 (72%), Gaps = 3/167 (1%)
 Frame = +3

Query: 114 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 293
           SLA ++P     + S S K+FSGLK++T+ + +     +V NGSRV  M VW P    KF
Sbjct: 14  SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 294 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 464
           ET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 465 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+Q Q+ GFLV
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLV 179


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 5e-47
 Identities = 97/177 (54%), Positives = 117/177 (66%), Gaps = 7/177 (3%)
 Frame = +3

Query: 96  MATMSASLAVSAP----GCAPAEL---SLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 254
           MA+  A+ AV AP      +PA     S + K+FSGLK++T+ + K  N  +V NGSRV 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 255 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 434
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 435 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +Q Q+ GFLV
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 177


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  189 bits (481), Expect = 8e-47
 Identities = 96/178 (53%), Positives = 118/178 (66%), Gaps = 7/178 (3%)
 Frame = +3

Query: 93  AMATMSASLAVSAP---GCAPAELSLSQ----KSFSGLKASTIVAPKCGNPLAVSNGSRV 251
           AMA++ A+  V AP     A + +S S+    K+FSGLK++T+ + K     +V NGSRV
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 252 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 431
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 432 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           GYYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +Q Q+ GFLV
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 179


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  189 bits (479), Expect = 1e-46
 Identities = 93/165 (56%), Positives = 112/165 (67%)
 Frame = +3

Query: 111 ASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKK 290
           A+ A S+   + +E S S K+FSGLK+ST+ + K  +  +V NGSRV  M VW P    K
Sbjct: 14  AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72

Query: 291 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKL 470
           FET SYLP LS + IAKQVDYM++Q   PC+EFDN   V R +    GYYDGRYW MWKL
Sbjct: 73  FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132

Query: 471 PMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQAQVAGFLV 605
           PMFGC D A VLREI EC K +P  F+RVLGFD  +Q Q+ GFLV
Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 177