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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944685
Clone id YMU02A01NGRL0006_N23
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_N23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTTCTAGGGGCTCCGGAGTGTCTGTGCCTCTGGCTCTGTAGGTGCCACGTCAGGGCGGAG
CAGAGATGATACCTACTAGAGCTGATTGTTGGGTAGGCCTTGGAGGGCGGTTCACCTTGG
AAGCTTAGCTTTGGAATGAGTGGTTCCTACCTGCCTACGATCTTTCTATGCCGGCTCCTC
CTTTTTGGAATAGGTGGAGGCCGCTCCTCCTACTCATCGTAGGGCAGAAATGGCGGCTTA
GGTTTCGACAGTGGGAGTGTTTTGCCTGTGGAGAATGGTGGGCTCTGCTGCGCTGTTCGT
GGCTTCCTCAAGCCCTTCGCTCCACCCTTTGAAGGTGCATAGCCCACCTCAACGGCCTGG
TCAACGAGATCTGTCTATACCCCCTTATCTAGATTTGGTTGCAGCTGTTTCTTGTTGGTC
TTTGTGGTGATGGAGTGGCCCCGACTCCCCTGATATGCGGCGGTATTCCTCTCTCAGGTC
TCCTTGCGTTTTTTTTTTGTGATGTCTTTGAGGGTGGCTCCCTATC
■■Homology search results ■■ -
sp_hit_id Q7N568
Definition sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH OS=Photorhabdus luminescens subsp. laumondii
Align length 34
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944685|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N23, 5'
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH OS=Photor...    35   0.17 
sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2 ...    34   0.49 
sp|Q5IS70|ATN1_PANTR Atrophin-1 OS=Pan troglodytes GN=ATN1 PE=2 ...    34   0.49 
sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1      34   0.49 
sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2      34   0.49 
sp|Q9VSR3|ORB2_DROME Probable RNA-binding protein orb2 OS=Drosop...    33   0.84 
sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1 ...    33   1.1  
sp|A8GFK7|MDTH_SERP5 Multidrug resistance protein mdtH OS=Serrat...    33   1.1  
sp|Q1E0A3|MCA1_COCIM Metacaspase-1 OS=Coccidioides immitis GN=MC...    33   1.1  
sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sa...    28   1.8  
sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 pr...    32   2.4  
sp|A4F870|DNLI_SACEN Probable DNA ligase OS=Saccharopolyspora er...    31   3.2  
sp|Q6MK45|PDXH_BDEBA Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   5.3  
sp|P73133|ARGD_SYNY3 Acetylornithine aminotransferase OS=Synecho...    30   9.1  
sp|P36196|ACES_CHICK Acetylcholinesterase OS=Gallus gallus GN=AC...    30   9.1  
sp|A2QBZ0|SEC31_ASPNC Protein transport protein sec31 OS=Aspergi...    30   9.2  
sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=P...    30   9.2  

>sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH
           OS=Photorhabdus luminescens subsp. laumondii GN=mdtH
           PE=3 SV=1
          Length = 401

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 87  CWVGLGGRFTLEA*LWNEWFLPAYDLSMPAPPFW 188
           CW G  G F L A +WN  FLPAY +S    P W
Sbjct: 167 CWTG-AGVFVLAA-IWNALFLPAYRISTTRTPIW 198


>sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2
           SV=1
          Length = 1183

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 845 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 887


>sp|Q5IS70|ATN1_PANTR Atrophin-1 OS=Pan troglodytes GN=ATN1 PE=2
           SV=1
          Length = 1186

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 848 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 890


>sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1
          Length = 1175

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 837 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 879


>sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2
          Length = 1185

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 847 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 889


>sp|Q9VSR3|ORB2_DROME Probable RNA-binding protein orb2
           OS=Drosophila melanogaster GN=orb2 PE=1 SV=1
          Length = 704

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = -2

Query: 510 QRHHKKKTQGDLREEYRRISGESGPLHHHKDQQETAATKSR*GGIDRSR*PGR*GGLCTF 331
           Q+H + + Q  L +  +++S     LHHH  QQ+        GG      PG  GG   +
Sbjct: 187 QQHQQHQQQQQLHQHQQQLSPNLSALHHHHQQQQQLRES---GGSHSPSSPGGGGGGSPY 243

Query: 330 KGWSEGLEEATNSAAEP 280
            G   G      S   P
Sbjct: 244 NGSQAGCSSGGISPIPP 260


>sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1
           OS=Homo sapiens GN=UBFD1 PE=1 SV=1
          Length = 533

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 356 AVEVGYAPSKGGAKGLRKPRTAQQSP 279
           + +VG APS G A+G R+P   QQSP
Sbjct: 61  SAQVGLAPSYGAARGRRRPLALQQSP 86


>sp|A8GFK7|MDTH_SERP5 Multidrug resistance protein mdtH OS=Serratia
           proteamaculans (strain 568) GN=mdtH PE=3 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +3

Query: 87  CWVGLGGRFTLEA*LWNEWFLPAYDLSMPAPP 182
           CWVG  G F L A  WN W LPAY +S    P
Sbjct: 167 CWVG-AGIFVLAAG-WNAWLLPAYRISTVRTP 196


>sp|Q1E0A3|MCA1_COCIM Metacaspase-1 OS=Coccidioides immitis GN=MCA1
           PE=3 SV=1
          Length = 462

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 517 PPSKTSQKKNARRPERGIPPHIRGVGATPSPQRP 416
           PPS     +    P+ G PPH    G TPSPQ P
Sbjct: 48  PPSYPPPGQYGHPPQPGYPPHSSPYGHTPSPQPP 81


>sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sapiens
            GN=C2orf16 PE=1 SV=2
          Length = 1984

 Score = 28.5 bits (62), Expect(2) = 1.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 301  HEQRSRAHHSPQAKHSHCRNLSRHFCPTMSRR 206
            H    R HHSP ++ SHC    R  C    RR
Sbjct: 1743 HSPSERRHHSP-SERSHCSPSERSHCSPSERR 1773



 Score = 23.1 bits (48), Expect(2) = 1.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 110  PPSKAYPTISSSRYHLCSALTWHLQSQRHRHSGAPR 3
            P  + + + S  R+H  S  + H  S+R  HS + R
Sbjct: 1769 PSERRHRSPSERRHHSPSEKSHHSPSERSHHSPSER 1804
tr_hit_id Q82MP6
Definition tr|Q82MP6|Q82MP6_STRAW Putative benzoate transport protein OS=Streptomyces avermitilis
Align length 60
Score (bit) 34.3
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944685|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_N23, 5'
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q82MP6|Q82MP6_STRAW Putative benzoate transport protein OS=St...    34   3.9  
tr|A9GNE0|A9GNE0_9RHOB Putative uncharacterized protein OS=Phaeo...    34   3.9  
tr|A9ELP6|A9ELP6_9RHOB Putative uncharacterized protein OS=Phaeo...    34   3.9  
tr|Q4QEH7|Q4QEH7_LEIMA Putative uncharacterized protein OS=Leish...    34   3.9  
tr|Q2T3G6|Q2T3G6_BURTA Diaminopimelate decarboxylase OS=Burkhold...    34   4.0  
tr|Q0JR45|Q0JR45_ORYSJ Os01g0120600 protein (Fragment) OS=Oryza ...    34   5.2  
tr|A6QP47|A6QP47_BOVIN ATN1 protein (Fragment) OS=Bos taurus GN=...    34   5.2  
tr|Q86V38|Q86V38_HUMAN Atrophin 1 OS=Homo sapiens GN=ATN1 PE=2 SV=1    34   5.2  
tr|Q59FW4|Q59FW4_HUMAN Atrophin-1 variant (Fragment) OS=Homo sap...    34   5.2  
tr|Q6LQD0|Q6LQD0_PHOPR Hypothetical transposase OS=Photobacteriu...    33   6.6  
tr|Q6LL52|Q6LL52_PHOPR Hypothetical transposase OS=Photobacteriu...    33   6.6  
tr|Q6LI11|Q6LI11_PHOPR Putative transposase OS=Photobacterium pr...    33   6.6  
tr|Q6LHA7|Q6LHA7_PHOPR Hypothetical transposase OS=Photobacteriu...    33   6.6  
tr|Q668S8|Q668S8_YERPS Putative uncharacterized protein OS=Yersi...    33   6.7  
tr|B4WXV1|B4WXV1_9GAMM PepSY-associated TM helix family OS=Alcan...    33   6.7  
tr|B1YXU0|B1YXU0_BURA4 Putative uncharacterized protein OS=Burkh...    33   8.6  
tr|Q9QCX3|Q9QCX3_9VIRU Replication protein OS=Chayote mosaic vir...    33   8.8  
tr|A4V1P2|A4V1P2_DROME Orb2, isoform C OS=Drosophila melanogaste...    33   8.8  

>tr|Q82MP6|Q82MP6_STRAW Putative benzoate transport protein
           OS=Streptomyces avermitilis GN=SAV1614 PE=4 SV=1
          Length = 442

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +3

Query: 156 YDLSMPAPPF-----WNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWLPQALR 320
           YD+ MPAP         RW  L  L  G  WR     W    CG        +WLP  +R
Sbjct: 216 YDVDMPAPEAERPAAGERWSALAALFRGNLWRTTLLFWLASFCGLLLVYGVSNWLPTMMR 275


>tr|A9GNE0|A9GNE0_9RHOB Putative uncharacterized protein
           OS=Phaeobacter gallaeciensis BS107 GN=RGBS107_17363 PE=4
           SV=1
          Length = 135

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 180 PFWNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWL 305
           P W  W   L+ ++    R  + QW C  C  +W  L   W+
Sbjct: 21  PEWGTWFKTLISLLPSPLRTLYEQWHCPFCAGFWIALALHWM 62


>tr|A9ELP6|A9ELP6_9RHOB Putative uncharacterized protein
           OS=Phaeobacter gallaeciensis 2.10 GN=RG210_14251 PE=4
           SV=1
          Length = 135

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 180 PFWNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWL 305
           P W  W   L+ ++    R  + QW C  C  +W  L   W+
Sbjct: 21  PEWGTWFKTLISLLPSPLRTLYEQWHCPFCAGFWIALALHWM 62


>tr|Q4QEH7|Q4QEH7_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF17.0110 PE=4 SV=1
          Length = 526

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -3

Query: 449 GSRGHSITTKTNKKQLQPNLD-KGV*TDLVDQAVEVGYAPSKGGAKGLRKPRTAQ----- 288
           GS GH+ +T TN +  +P+L   G  + L D  ++ G A +  G K   +P  A+     
Sbjct: 58  GSHGHATSTHTNPRSREPSLTVAGRSSSLPDTPLKRGSAAAASGVKSFSRPAAARFVAAG 117

Query: 287 QSPPFS 270
            +PP S
Sbjct: 118 NTPPLS 123


>tr|Q2T3G6|Q2T3G6_BURTA Diaminopimelate decarboxylase
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=BTH_II2095 PE=3 SV=1
          Length = 907

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
 Frame = -1

Query: 499 QKKNARRPERGIPPHIRGVGATPSPQRPTRNSCNQI*IRGYRQISLTRPLRWAMHLQRVE 320
           +++N  R +R   PH R V +  SP   +R++      RG  +    RPLR  + LQR+ 
Sbjct: 302 RRRNRAREKRAPEPHGRDVPSERSPVSRSRSARRDFARRGGTRADRRRPLR-PIRLQRLR 360

Query: 319 RRA*GSHEQRSR--------AHHSPQAKHSHCRNLSRHFCPTMSRRSGLHLFQKGGAGIE 164
            RA      R+R        A  + +A+ +      R       RR+ L   ++  AG  
Sbjct: 361 TRARRRRPARARRVRAELHGARQAGRARRAARARACRAARRVAGRRARLRAHRRQPAGCR 420

Query: 163 RS*AGRNHSFQS*ASKVNRPPRPTQ 89
                R  S      + +RP RP +
Sbjct: 421 LRRRNRRAS-----GRRHRPKRPAR 440


>tr|Q0JR45|Q0JR45_ORYSJ Os01g0120600 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0120600 PE=4 SV=1
          Length = 282

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 523 REPPSKTSQKKNARRPERGIPPHIRGVGATPSPQRP 416
           R+P + TS  + ARRP    PPH   VGA P P  P
Sbjct: 26  RDPATATSPPRRARRPP---PPHAPPVGAAPPPPPP 58


>tr|A6QP47|A6QP47_BOVIN ATN1 protein (Fragment) OS=Bos taurus
           GN=ATN1 PE=2 SV=1
          Length = 690

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 352 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 394


>tr|Q86V38|Q86V38_HUMAN Atrophin 1 OS=Homo sapiens GN=ATN1 PE=2 SV=1
          Length = 1191

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 853 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 895


>tr|Q59FW4|Q59FW4_HUMAN Atrophin-1 variant (Fragment) OS=Homo
           sapiens PE=2 SV=1
          Length = 774

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 314 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 490
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 436 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 478


>tr|Q6LQD0|Q6LQD0_PHOPR Hypothetical transposase OS=Photobacterium
           profundum GN=MT3534 PE=4 SV=1
          Length = 339

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 146 EPLIPKLSFQGEPPSKAYPTISSSRYHLCSALTWHLQSQRHRHSG 12
           E L   L ++ E P KA+  I+SSR  +   + W+  +  HRHSG
Sbjct: 231 ESLFRTLKYRPEYPEKAFENIASSRRWVSDFVCWY--NNEHRHSG 273