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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944687
Clone id YMU02A01NGRL0006_O01
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_O01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGTGGCATCGGCTATGGCTCTACGATTTACCAAACCCTCAGCTGGACCTCGGCTACCCCT
GCCATGCGCCAAGTCTCTTCGTCATCTGCCTCCCTCATCATCATCATCACGCTCTCGAGC
TGTCGTGAGAGCTTCTGAGAAGCCACAACGCACAGCATATGAGGAAGACGAATACATGGA
GACTCTTACAGAACTCTCCAGTGAAATCGAGGTATCAAAGGCTTCCTTGCTCACCCCCGA
GCACAAAGCTTTGCTCGCTCTGTTGCTTTCACTAGGGTTCACACTTGGGTCTGCAGAGGT
GGCCATGGCTTTGGGTCCTGAGGGCCCTCTTGTAGAAGAATTTTGGGACAACATGAGGAG
GTATGGCCTCTACTTCTTGACAGTTTTCACAGGAGGTCTTTACAGTCTTGTGGAGCCCAT
TTTTTCTCTTCTTCGCAATCCAGTAACGGCCATTTTCACGATTGCTTTCCTTTTTTGGCT
TCTTGTATCTCCTCTACTTAGTTCTGAACACCATGCTGGGCATCACCGCCTTCAATTATG
ATTATGCATA
■■Homology search results ■■ -
sp_hit_id Q1XDF7
Definition sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra yezoensis
Align length 51
Score (bit) 40.8
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O01, 5'
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra ...    41   0.004
sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardi...    39   0.022
sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra ...    37   0.049
sp|Q9NA25|NDX8_CAEEL Peroxisomal coenzyme A diphosphatase ndx-8 ...    31   3.5  
sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster ...    30   6.0  
sp|Q88IU7|LPXH_PSEPK UDP-2,3-diacylglucosamine hydrolase OS=Pseu...    30   6.0  
sp|A5W461|LPXH_PSEP1 UDP-2,3-diacylglucosamine hydrolase OS=Pseu...    30   6.0  
sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos tauru...    30   6.0  

>sp|Q1XDF7|YCF33_PORYE Uncharacterized protein ycf33 OS=Porphyra
           yezoensis GN=ycf33 PE=3 SV=1
          Length = 67

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +2

Query: 332 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFLFWLL 484
           + +FWDN+ R+  + ++V  G +  ++ P F LL+ P+T+ F I  L  L+
Sbjct: 1   MNKFWDNVLRFPRFLVSVILGLILIIISPFFVLLKKPLTSFFFIISLAGLI 51


>sp|O78517|YCF33_GUITH Uncharacterized protein ycf33 OS=Guillardia
           theta GN=ycf33 PE=3 SV=1
          Length = 65

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +2

Query: 341 FWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFLFWLLVSPLLS 502
           FW+N+ RY  +F++   G ++ +  P+F+LL  P +A+     +F +L   L++
Sbjct: 4   FWENLIRYPRFFISSTLGLVFIITGPLFNLLNKPKSALLFAIIVFGILSGLLIT 57


>sp|P51329|YCF33_PORPU Uncharacterized protein ycf33 OS=Porphyra
           purpurea GN=ycf33 PE=3 SV=1
          Length = 67

 Score = 37.4 bits (85), Expect = 0.049
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 332 VEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFLFWLLV 487
           +  FW+N+ ++  + ++V  G + +++ P F L R P T+ F I     LLV
Sbjct: 1   MSRFWNNVVKFPRFLVSVILGLILTIISPFFVLFRKPSTSFFFIISFTGLLV 52


>sp|Q9NA25|NDX8_CAEEL Peroxisomal coenzyme A diphosphatase ndx-8
           OS=Caenorhabditis elegans GN=ndx-8 PE=1 SV=1
          Length = 234

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 377 LTVFTGGLYSLVEPIFSLLRNPVTAIFTIA---FLFWLLVSPLLSSEHHA 517
           L  F      L+ P  +LLR P T + +I     +FW+ +S  L   HH+
Sbjct: 103 LPAFRARFGVLIHPTVALLRRPPTFVLSIGEVESIFWIPLSQFLEDTHHS 152


>sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster
           GN=tsh PE=1 SV=2
          Length = 954

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = -2

Query: 519 PAWCSELSRGDTRSQKRKAIVKMAVTGLRRREKMGSTRL*RPPVKTVKK*RPYLLMLSQN 340
           P W S+        +K   IVK   +G+  +EKM S++   P   +     P     +QN
Sbjct: 256 PDWNSKNDLVVDPLEKMSDIVKGGASGMGTKEKMHSSKATTPQAASQPPKSPVQPTPNQN 315

Query: 339 SSTRGPSGPKAMATSADPSV--NPSESNRASKALCSGV-----SKEAFDT 211
           S + G SG  A  + A      N  +S+  +K + S V      K++F T
Sbjct: 316 SESGGGSGGGAAGSGAVTKARHNIWQSHWQNKGVASSVFRCVWCKQSFPT 365


>sp|Q88IU7|LPXH_PSEPK UDP-2,3-diacylglucosamine hydrolase
           OS=Pseudomonas putida (strain KT2440) GN=lpxH PE=3 SV=1
          Length = 240

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 454 NGRYWIAKKRKNGLHKTVKTSCENCQEVEAIPPHVVPKFFYKRALRTQSHGHLCRP 287
           + RY +A+K ++     V+       E+  + P  VPK      +RT  HGH  RP
Sbjct: 146 SARYKLARKLRSESRTQVRMKST---EIVDVTPEEVPKVMAAHGVRTLVHGHTHRP 198


>sp|A5W461|LPXH_PSEP1 UDP-2,3-diacylglucosamine hydrolase
           OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lpxH
           PE=3 SV=1
          Length = 240

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 454 NGRYWIAKKRKNGLHKTVKTSCENCQEVEAIPPHVVPKFFYKRALRTQSHGHLCRP 287
           + RY +A+K ++     V+       E+  + P  VPK      +RT  HGH  RP
Sbjct: 146 SARYKLARKLRSESRTQVRMKST---EIVDVTPEEVPKVMAAHGVRTLVHGHTHRP 198


>sp|Q32LL5|INT12_BOVIN Integrator complex subunit 12 OS=Bos taurus
           GN=INTS12 PE=2 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 342 NSSTRGPSGPKAMATSADPSVNPSES 265
           NS T GPSG     T+++PS +PS S
Sbjct: 406 NSGTSGPSGSTTNKTASEPSTSPSAS 431
tr_hit_id Q9SUL0
Definition tr|Q9SUL0|Q9SUL0_ARATH Putative uncharacterized protein AT4g16410 OS=Arabidopsis thaliana
Align length 73
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944687|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O01, 5'
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SUL0|Q9SUL0_ARATH Putative uncharacterized protein AT4g1641...    89   2e-16
tr|Q8VZK4|Q8VZK4_ARATH Putative uncharacterized protein At4g1641...    89   2e-16
tr|Q8LCS9|Q8LCS9_ARATH Putative uncharacterized protein OS=Arabi...    89   2e-16
tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea...    88   2e-16
tr|A5ADD6|A5ADD6_VITVI Putative uncharacterized protein OS=Vitis...    82   2e-15
tr|A7R2A4|A7R2A4_VITVI Chromosome undetermined scaffold_410, who...    82   2e-15
tr|Q69J35|Q69J35_ORYSJ Os07g0607200 protein OS=Oryza sativa subs...    85   2e-15
tr|A2YNJ6|A2YNJ6_ORYSI Putative uncharacterized protein OS=Oryza...    85   2e-15
tr|B6U1R4|B6U1R4_MAIZE Putative uncharacterized protein OS=Zea m...    85   3e-15
tr|B6T2K7|B6T2K7_MAIZE Putative uncharacterized protein OS=Zea m...    84   4e-15
tr|A0ZC10|A0ZC10_NODSP Putative uncharacterized protein OS=Nodul...    49   2e-04
tr|Q8DIU8|Q8DIU8_THEEB Ycf33 protein OS=Thermosynechococcus elon...    47   9e-04
tr|B8HWS0|B8HWS0_9CHRO Putative uncharacterized protein OS=Cyano...    47   9e-04
tr|Q3M9Q9|Q3M9Q9_ANAVT Putative uncharacterized protein OS=Anaba...    44   0.004
tr|Q8Z0M9|Q8Z0M9_ANASP Asr0062 protein OS=Anabaena sp. (strain P...    44   0.006
tr|A8G2B7|A8G2B7_PROM2 Putative uncharacterized protein ycf33 OS...    44   0.006
tr|A2BNQ6|A2BNQ6_PROMS Putative uncharacterized protein OS=Proch...    42   0.016
tr|Q31D69|Q31D69_PROM9 Putative uncharacterized protein OS=Proch...    42   0.022
tr|A3PAH6|A3PAH6_PROM0 Putative uncharacterized protein OS=Proch...    42   0.022
tr|A8J6Q3|A8J6Q3_CHLRE Predicted protein OS=Chlamydomonas reinha...    42   0.022
tr|Q7V3G4|Q7V3G4_PROMP Putative uncharacterized protein OS=Proch...    42   0.028
tr|A2BU73|A2BU73_PROM5 Putative uncharacterized protein OS=Proch...    40   0.063
tr|B7KDK0|B7KDK0_9CHRO Putative uncharacterized protein OS=Cyano...    40   0.063
tr|B4WMR3|B4WMR3_9SYNE Putative uncharacterized protein OS=Synec...    40   0.082
tr|Q10XT4|Q10XT4_TRIEI Putative uncharacterized protein OS=Trich...    40   0.11 
tr|Q7VE82|Q7VE82_PROMA Uncharacterized membrane protein OS=Proch...    39   0.14 
tr|Q2JTT4|Q2JTT4_SYNJA Putative uncharacterized protein OS=Synec...    39   0.14 
tr|Q2JPQ8|Q2JPQ8_SYNJB Putative uncharacterized protein OS=Synec...    39   0.18 
tr|A5KBB5|A5KBB5_PLAVI Putative uncharacterized protein OS=Plasm...    39   0.24 
tr|Q93LL6|Q93LL6_NOSP7 Putative uncharacterized protein OS=Nosto...    38   0.31 

>tr|Q9SUL0|Q9SUL0_ARATH Putative uncharacterized protein AT4g16410
           OS=Arabidopsis thaliana GN=dl4233c PE=4 SV=1
          Length = 183

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 44/73 (60%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
 Frame = +2

Query: 293 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFL 472
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +  L
Sbjct: 98  AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 157

Query: 473 --FWLLVSPLLSS 505
              + +VS ++S+
Sbjct: 158 GGSFYIVSQVVSA 170


>tr|Q8VZK4|Q8VZK4_ARATH Putative uncharacterized protein At4g16410
           OS=Arabidopsis thaliana GN=At4g16410 PE=2 SV=1
          Length = 185

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 44/73 (60%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
 Frame = +2

Query: 293 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFL 472
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +  L
Sbjct: 100 AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 159

Query: 473 --FWLLVSPLLSS 505
              + +VS ++S+
Sbjct: 160 GGSFYIVSQVVSA 172


>tr|Q8LCS9|Q8LCS9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 185

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 44/73 (60%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
 Frame = +2

Query: 293 AEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFL 472
           AE AMALGPEGPL+EEFWDN+RRYGLY LTV TG L ++ EPIF LL+NP++AI  +  L
Sbjct: 100 AEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLIL 159

Query: 473 --FWLLVSPLLSS 505
              + +VS ++S+
Sbjct: 160 GGSFYIVSQVVSA 172


>tr|A9P095|A9P095_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 225

 Score = 87.8 bits (216), Expect(2) = 2e-16
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
 Frame = +2

Query: 287 GSAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIA 466
           GS + A+A  PEGPLVEEFW+NMRRYGLYF TV TG +Y++++PI+ LL+NP++A+  I 
Sbjct: 138 GSEQSALAFWPEGPLVEEFWENMRRYGLYFFTVGTGAVYTILKPIYELLKNPISAVLVIV 197

Query: 467 F---LFWLL 484
               +F+LL
Sbjct: 198 IISGIFYLL 206



 Score = 20.8 bits (42), Expect(2) = 2e-16
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 513 MLGITAFNYDYA 548
           M+GI+ F+Y YA
Sbjct: 213 MIGISEFSYQYA 224


>tr|A5ADD6|A5ADD6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023242 PE=4 SV=1
          Length = 266

 Score = 82.0 bits (201), Expect(2) = 2e-15
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = +2

Query: 302 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 463
           A+ALGPEGPL+EEFWDN+RRY LYFLTV TG +Y++  PI  LL+NP++AI  +
Sbjct: 184 ALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVL 237



 Score = 23.1 bits (48), Expect(2) = 2e-15
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 507 NTMLGITAFNYDYA 548
           + M+G+T F+YDY+
Sbjct: 252 SAMVGVTEFSYDYS 265


>tr|A7R2A4|A7R2A4_VITVI Chromosome undetermined scaffold_410, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012886001 PE=4 SV=1
          Length = 190

 Score = 82.0 bits (201), Expect(2) = 2e-15
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = +2

Query: 302 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTI 463
           A+ALGPEGPL+EEFWDN+RRY LYFLTV TG +Y++  PI  LL+NP++AI  +
Sbjct: 108 ALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVL 161



 Score = 23.1 bits (48), Expect(2) = 2e-15
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 507 NTMLGITAFNYDYA 548
           + M+G+T F+YDY+
Sbjct: 176 SAMVGVTEFSYDYS 189


>tr|Q69J35|Q69J35_ORYSJ Os07g0607200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0072I06.21 PE=2 SV=1
          Length = 196

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
 Frame = +2

Query: 290 SAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAF 469
           +A  A ALGPEGPLVEEFWDNMRRY LY +TV TG  Y+L +PI  LL+NPVTA+  +A 
Sbjct: 110 AAGPAAALGPEGPLVEEFWDNMRRYALYVVTVSTGFAYTLAQPIVELLKNPVTALLIVAV 169

Query: 470 LF--WLLVSPLLSS 505
           L     LVS +L++
Sbjct: 170 LAGGGFLVSQVLNA 183


>tr|A2YNJ6|A2YNJ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26809 PE=4 SV=1
          Length = 196

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
 Frame = +2

Query: 290 SAEVAMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAF 469
           +A  A ALGPEGPLVEEFWDNMRRY LY +TV TG  Y+L +PI  LL+NPVTA+  +A 
Sbjct: 110 AAGPAAALGPEGPLVEEFWDNMRRYALYVVTVSTGFAYTLAQPIVELLKNPVTALLIVAV 169

Query: 470 LF--WLLVSPLLSS 505
           L     LVS +L++
Sbjct: 170 LAGGGFLVSQVLNA 183


>tr|B6U1R4|B6U1R4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 196

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = +2

Query: 302 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFL--F 475
           A+ALGPEGPLVEEFWDNMRRY LY +TV TG  Y++++PI  LL+NP+TA+  +A L   
Sbjct: 115 ALALGPEGPLVEEFWDNMRRYALYVVTVSTGVAYTVLQPIVELLKNPITALLIVAVLAGS 174

Query: 476 WLLVSPLLSS 505
             LVS +L++
Sbjct: 175 GFLVSQVLNA 184


>tr|B6T2K7|B6T2K7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 192

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = +2

Query: 302 AMALGPEGPLVEEFWDNMRRYGLYFLTVFTGGLYSLVEPIFSLLRNPVTAIFTIAFL--F 475
           A+ALGPEGPLVEEFWDNMRRY LY +TV TG  Y++++PI  LL+NPVTA+  +A +   
Sbjct: 111 ALALGPEGPLVEEFWDNMRRYALYVVTVSTGVAYTVLQPIVELLKNPVTALLIVAVIAGS 170

Query: 476 WLLVSPLLSS 505
             LVS +L++
Sbjct: 171 GFLVSQVLNA 180