NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944697
Clone id YMU02A01NGRL0006_O15
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_O15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATCTC
CCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGGCA
AAAATGATGAATAGAATAAATTGAAAGAAAAGTGAAAAAAAAAAATGGAAAAGGGCAAGA
AGGCCTTGTGAAAATATTACGATTTTTGATCTCGCACGACAAATTCTGATAAAATGACTT
ATCAACAATCTGGTAATCTCATATTCAAGAGAACTATACCAACTCCTGGAATATAGAAAT
AGGAATGAGGGACCTAAAAGTGGTTTGGGTAGCTTAGTGGGAACAGATATGACAATTGCC
ATTGGAAAATCTTCCAGAGAACCGAAAGACGATGTCGCGACCCCTGCAGACGAGTGGCAT
GCTTTCGAGGCAGCAGCTGCTTCAGCTCTTCGACGATTTCTCCCGCATTGTCTCGCGCCC
CGATGTGAAGAANAGAATTGAAGATGCTGTAAAGCAAAAGCAGGAAGCTGTTGCTGTGAC
AACGGAAATTCAAGAAGAGTTGCTGGAAC
■■Homology search results ■■ -
sp_hit_id O74898
Definition sp|O74898|DPH5_SCHPO Diphthine synthase OS=Schizosaccharomyces pombe
Align length 75
Score (bit) 31.2
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944697|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O15, 5'
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74898|DPH5_SCHPO Diphthine synthase OS=Schizosaccharomyces p...    31   3.8  
sp|O74372|DUO1_SCHPO DASH complex subunit duo1 OS=Schizosaccharo...    31   4.9  
sp|Q8WI19|PSBD_PSINU Photosystem II D2 protein OS=Psilotum nudum...    30   8.4  
sp|A2T330|PSBD_ANGEV Photosystem II D2 protein OS=Angiopteris ev...    30   8.4  
sp|Q85FM2|PSBD_ADICA Photosystem II D2 protein OS=Adiantum capil...    30   8.4  
sp|Q7Z6M3|MCA32_HUMAN Probable mast cell antigen 32 homolog OS=H...    30   8.4  
sp|Q4R2Y2|HYLS1_MACFA Hydrolethalus syndrome protein 1 homolog O...    30   8.4  
sp|Q96M11|HYLS1_HUMAN Hydrolethalus syndrome protein 1 OS=Homo s...    30   8.4  

>sp|O74898|DPH5_SCHPO Diphthine synthase OS=Schizosaccharomyces
           pombe GN=dph5 PE=2 SV=1
          Length = 283

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +2

Query: 260 HIQENYTNSWNIEIGMRDLKVVWVA*WEQI*QLPLENLPENRKTMSRPLQTSGMLSRQQL 439
           HI+EN      + +G+  L ++ +   EQ      ENL   RK    P   S  L+ QQ+
Sbjct: 148 HIKEN------VSLGLHTLVLLDIKVKEQ----SWENLARGRKVYEPPRYMSASLAAQQM 197

Query: 440 LQLFDDFSRIVSRPD 484
           L++ +D    +  PD
Sbjct: 198 LEVEEDRQENICTPD 212


>sp|O74372|DUO1_SCHPO DASH complex subunit duo1
           OS=Schizosaccharomyces pombe GN=duo1 PE=2 SV=1
          Length = 166

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 422 LSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEELL 565
           L  Q++LQ+  +  R +     + R+E   +QK+EA+A+  + Q+ LL
Sbjct: 82  LQHQKMLQIQAEEQRKIELQQEQERLEQERRQKEEAIALQKQQQQRLL 129


>sp|Q8WI19|PSBD_PSINU Photosystem II D2 protein OS=Psilotum nudum
           GN=psbD PE=3 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 349 MTIAIGKSSREPKD 390
           MTIAIGKSS+EPKD
Sbjct: 1   MTIAIGKSSKEPKD 14


>sp|A2T330|PSBD_ANGEV Photosystem II D2 protein OS=Angiopteris
           evecta GN=psbD PE=3 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 349 MTIAIGKSSREPKD 390
           MTIAIGKSS+EPKD
Sbjct: 1   MTIAIGKSSKEPKD 14


>sp|Q85FM2|PSBD_ADICA Photosystem II D2 protein OS=Adiantum
           capillus-veneris GN=psbD PE=2 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 349 MTIAIGKSSREPKD 390
           MTIAIGKSS+EPKD
Sbjct: 1   MTIAIGKSSKEPKD 14


>sp|Q7Z6M3|MCA32_HUMAN Probable mast cell antigen 32 homolog OS=Homo
           sapiens GN=MCA32 PE=2 SV=2
          Length = 343

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 547 FRCHSNSFLLLLYSIFNSXLHIGARDNAGE 458
           F  H N  L + YS+F    H+G +D  GE
Sbjct: 55  FCSHKNKSLQITYSLFRRKTHLGTQDGKGE 84


>sp|Q4R2Y2|HYLS1_MACFA Hydrolethalus syndrome protein 1 homolog
           OS=Macaca fascicularis GN=HYLS1 PE=2 SV=1
          Length = 299

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 412 RLQGSRHRLSVLWKIFQWQLSYLFPLSYPNHF*VPHSY 299
           RL G  HR  + W + +  L    P S P H  VP++Y
Sbjct: 227 RLPGEDHRKELRWGVREQMLCRAEPQSKPQHIYVPNNY 264


>sp|Q96M11|HYLS1_HUMAN Hydrolethalus syndrome protein 1 OS=Homo
           sapiens GN=HYLS1 PE=1 SV=1
          Length = 299

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 412 RLQGSRHRLSVLWKIFQWQLSYLFPLSYPNHF*VPHSY 299
           RL G  HR  + W + +  L    P S P H  VP++Y
Sbjct: 227 RLPGEDHRKELRWGVREQMLCRAEPQSKPQHIYVPNNY 264
tr_hit_id B8LNI6
Definition tr|B8LNI6|B8LNI6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 63
Score (bit) 75.5
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944697|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O15, 5'
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LNI6|B8LNI6_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|A9P2E9|A9P2E9_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|A9SVY8|A9SVY8_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   7e-12
tr|A7P9U9|A7P9U9_VITVI Chromosome chr14 scaffold_9, whole genome...    74   7e-12
tr|A9RPX3|A9RPX3_PHYPA Predicted protein OS=Physcomitrella paten...    72   3e-11
tr|Q9LSD1|Q9LSD1_ARATH Genomic DNA, chromosome 3, P1 clone: MOJ1...    69   2e-10
tr|Q94JV2|Q94JV2_ARATH AT3g27050/MOJ10_14 OS=Arabidopsis thalian...    69   2e-10
tr|Q2R450|Q2R450_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    67   7e-10
tr|A2ZEB7|A2ZEB7_ORYSI Putative uncharacterized protein OS=Oryza...    67   7e-10
tr|B6TAV3|B6TAV3_MAIZE Putative uncharacterized protein OS=Zea m...    66   1e-09
tr|B4FPG0|B4FPG0_MAIZE Putative uncharacterized protein OS=Zea m...    66   1e-09
tr|Q2R449|Q2R449_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    57   7e-07
tr|B2EI57|B2EI57_9BACT NHL repeat containing protein OS=bacteriu...    37   0.77 
tr|Q5KLS6|Q5KLS6_CRYNE Putative uncharacterized protein OS=Crypt...    36   1.7  
tr|Q55Y62|Q55Y62_CRYNE Putative uncharacterized protein OS=Crypt...    36   1.7  
tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    35   2.9  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|A0CWU1|A0CWU1_PARTE Chromosome undetermined scaffold_3, whole...    34   5.0  
tr|Q553R1|Q553R1_DICDI Putative uncharacterized protein OS=Dicty...    34   6.5  

>tr|B8LNI6|B8LNI6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 193

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 41/63 (65%), Positives = 45/63 (71%)
 Frame = +2

Query: 377 ENRKTMSRPLQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQE 556
           E+    S  LQ SGMLSRQQL  LF  F   + +P VK RIEDAV+ KQEAVAVTTEIQE
Sbjct: 15  EDTSVGSTSLQNSGMLSRQQLFHLFHLFKHEIDKPAVKKRIEDAVRDKQEAVAVTTEIQE 74

Query: 557 ELL 565
           ELL
Sbjct: 75  ELL 77


>tr|A9P2E9|A9P2E9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 193

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 41/63 (65%), Positives = 45/63 (71%)
 Frame = +2

Query: 377 ENRKTMSRPLQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQE 556
           E+    S  LQ SGMLSRQQL  LF  F   + +P VK RIEDAV+ KQEAVAVTTEIQE
Sbjct: 15  EDTSVGSTSLQNSGMLSRQQLFHLFHLFKHEIDKPAVKKRIEDAVRDKQEAVAVTTEIQE 74

Query: 557 ELL 565
           ELL
Sbjct: 75  ELL 77


>tr|A9SVY8|A9SVY8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_18502 PE=4 SV=1
          Length = 141

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = +2

Query: 404 LQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEELL 565
           LQ+SGML+++QLLQLF  FS+++  P+ K RI DA+K KQEAV VTT+IQEELL
Sbjct: 1   LQSSGMLTKEQLLQLFQQFSKVLDEPETKRRIADAIKAKQEAVNVTTKIQEELL 54


>tr|A7P9U9|A7P9U9_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037858001
           PE=4 SV=1
          Length = 182

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 39/57 (68%), Positives = 44/57 (77%)
 Frame = +2

Query: 392 MSRPLQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEEL 562
           MS   Q SGMLSR QLL LF+ FS + S+PDVK RI DAV+ KQEAVAVTT IQEE+
Sbjct: 1   MSSTSQNSGMLSRDQLLHLFNRFSFLTSQPDVKKRIADAVEDKQEAVAVTTAIQEEI 57


>tr|A9RPX3|A9RPX3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_117554 PE=4 SV=1
          Length = 203

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 34/53 (64%), Positives = 44/53 (83%)
 Frame = +2

Query: 404 LQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEEL 562
           LQ+ GML+++QLLQLF DFS ++ +P+ K RI DA+K +QEAV VTTEIQEEL
Sbjct: 20  LQSEGMLTKEQLLQLFRDFSSVLDQPETKSRIADAIKDEQEAVNVTTEIQEEL 72


>tr|Q9LSD1|Q9LSD1_ARATH Genomic DNA, chromosome 3, P1 clone: MOJ10
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 223

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = +2

Query: 392 MSRPLQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEEL 562
           M+  LQ+SGML+++Q++ LFD F  + S+ DVK RI DAV  KQEAVAVTT IQEE+
Sbjct: 1   MASSLQSSGMLTKEQMVYLFDRFDYLTSQSDVKKRISDAVDDKQEAVAVTTAIQEEI 57


>tr|Q94JV2|Q94JV2_ARATH AT3g27050/MOJ10_14 OS=Arabidopsis thaliana
           GN=At3g27050 PE=2 SV=1
          Length = 182

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = +2

Query: 392 MSRPLQTSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEEL 562
           M+  LQ+SGML+++Q++ LFD F  + S+ DVK RI DAV  KQEAVAVTT IQEE+
Sbjct: 1   MASSLQSSGMLTKEQMVYLFDRFDYLTSQSDVKKRISDAVDDKQEAVAVTTAIQEEI 57


>tr|Q2R450|Q2R450_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os11g29700 PE=4 SV=1
          Length = 176

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 34/52 (65%), Positives = 41/52 (78%)
 Frame = +2

Query: 410 TSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEELL 565
           T+ M++R QLL LF  FS + S P+VK RI DAV+ KQEAVAVTTEIQEE+L
Sbjct: 10  TTSMMTRPQLLHLFSRFSFLTSLPEVKARIADAVRDKQEAVAVTTEIQEEIL 61


>tr|A2ZEB7|A2ZEB7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36131 PE=4 SV=1
          Length = 176

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 34/52 (65%), Positives = 41/52 (78%)
 Frame = +2

Query: 410 TSGMLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEELL 565
           T+ M++R QLL LF  FS + S P+VK RI DAV+ KQEAVAVTTEIQEE+L
Sbjct: 10  TTSMMTRPQLLHLFSRFSFLTSLPEVKARIADAVRDKQEAVAVTTEIQEEIL 61


>tr|B6TAV3|B6TAV3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 172

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +2

Query: 419 MLSRQQLLQLFDDFSRIVSRPDVKXRIEDAVKQKQEAVAVTTEIQEELL 565
           M++R+QLL LF  FS + S P+VK RI DAV+ KQEAVAVTTEIQEE+L
Sbjct: 9   MMTREQLLHLFSRFSFVTSLPEVKQRIADAVRDKQEAVAVTTEIQEEIL 57