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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944701
Clone id YMU02A01NGRL0006_O20
Library
Length 224
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_O20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGGGATACTGATTATTACTTCATTTTACTAAGTGATGCACCTCAGAGCTGCACCCCCCAT
TGTGCTGATCCACTACCCGGTCGTACTCCTACCTCACTCTCCAGCCCCACTCGCAAGCCC
CTCTCAATATCCCATGACAATCTTCTAGGACCACCTTGTCCTGATTGATCTTCCTGAATG
CCCTACCGTGAGACAGTACCGTGTGAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43497
Definition sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo sapiens
Align length 55
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944701|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O20, 5'
         (205 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel s...    30   2.9  
sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein...    30   4.9  
sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription...    30   4.9  
sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription...    30   4.9  
sp|Q38J84|IL2RB_PANTR Interleukin-2 receptor subunit beta OS=Pan...    30   4.9  
sp|Q7KZ85|SPT6H_HUMAN Transcription elongation factor SPT6 OS=Ho...    29   6.4  
sp|Q9NV39|CV026_HUMAN Putative uncharacterized protein C22orf26 ...    29   6.4  

>sp|O43497|CAC1G_HUMAN Voltage-dependent T-type calcium channel
            subunit alpha-1G OS=Homo sapiens GN=CACNA1G PE=2 SV=3
          Length = 2377

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +1

Query: 4    DTDYYFILLSDAPQSCTPHCAD--------PLPGRTPTSLSSPTRKPLSISHDNL 144
            DT Y   L  DAP    PH A         P PGR+P +   P R+  +I  D+L
Sbjct: 2088 DTSYILQLPKDAPHLLQPHSAPTWGTIPKLPPPGRSPLA-QRPLRRQAAIRTDSL 2141


>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6
           OS=Mus musculus GN=Zc3h6 PE=2 SV=2
          Length = 1177

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  SDAPQSCTPHCADPLPG-RTPTSLSSPTRKPLSISHDNLLGPPCP 162
           S  PQ      + P PG + P    SP R P S  H   +GPP P
Sbjct: 464 SHCPQRMYSSESSPGPGSKVPQGCESPVRHPGSPGHHPCVGPPGP 508


>sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription
            subunit 12 OS=Neosartorya fischeri (strain ATCC 1020 /
            DSM 3700 / NRRL 181) GN=srb8 PE=3 SV=1
          Length = 1612

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 22   ILLSDAPQSCTPHCADPLPGRTPTSLSSPTRKPLSISHDNLLG 150
            ILL+  P+S   HC + L G+ P++++  TR     + D+LLG
Sbjct: 1130 ILLTKNPESAVKHCTEKLIGQHPSAVTVLTR-----ALDSLLG 1167


>sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription
            subunit 12 OS=Aspergillus fumigatus GN=srb8 PE=3 SV=2
          Length = 1617

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 22   ILLSDAPQSCTPHCADPLPGRTPTSLSSPTRKPLSISHDNLLG 150
            ILL+  P+S   HC++ L G+ P++++  TR     + D+LLG
Sbjct: 1130 ILLTKNPESAVRHCSEKLIGQHPSAVTVLTR-----ALDSLLG 1167


>sp|Q38J84|IL2RB_PANTR Interleukin-2 receptor subunit beta OS=Pan
           troglodytes GN=IL2RB PE=2 SV=1
          Length = 551

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 28  LSDAPQSCTPHCADPLPGRTPTSLSSPTRKPLSISHDNLLGPPCP 162
           ++ AP   +P    PL G   T  + P+R  L +   +LLG P P
Sbjct: 396 VAGAPTGSSPQPLQPLSGEDDTYCTFPSRDGLLLFSPSLLGGPSP 440


>sp|Q7KZ85|SPT6H_HUMAN Transcription elongation factor SPT6 OS=Homo
            sapiens GN=SUPT6H PE=1 SV=2
          Length = 1726

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +1

Query: 58   HCADPLPGRTPTSLSSPTRKPLSIS 132
            H  DP+PG TP+S SS TR P SI+
Sbjct: 1514 HYQDPVPGITPSS-SSRTRTPASIN 1537


>sp|Q9NV39|CV026_HUMAN Putative uncharacterized protein C22orf26
           OS=Homo sapiens GN=C22orf26 PE=2 SV=1
          Length = 138

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 49  CTPHCADPLPGRTPTSLSSPTRKP 120
           C P C  PLP   PTS  +P  +P
Sbjct: 11  CPPLCLPPLPASAPTSPPNPATRP 34
tr_hit_id B2W754
Definition tr|B2W754|B2W754_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 29
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944701|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_O20, 5'
         (205 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2W754|B2W754_PYRTR Putative uncharacterized protein OS=Pyren...    33   5.4  
tr|Q0IRA5|Q0IRA5_ORYSJ Os11g0657400 protein OS=Oryza sativa subs...    33   7.0  
tr|A1CWU2|A1CWU2_NEOFI Putative uncharacterized protein OS=Neosa...    33   7.0  

>tr|B2W754|B2W754_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_05642 PE=4 SV=1
          Length = 643

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 143 RLSWDIERGLRVGLESEVGVRPGSGSAQW 57
           RL W+ E     G E + GVRPG G  +W
Sbjct: 611 RLKWEEEEAKYAGSEKKAGVRPGEGRGRW 639


>tr|Q0IRA5|Q0IRA5_ORYSJ Os11g0657400 protein OS=Oryza sativa subsp.
            japonica GN=Os11g0657400 PE=4 SV=1
          Length = 1399

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 37   APQSCTPHCADPLPGRTPTSLSSPTRKPLSISHDNLLGPPCPD*SS*MPYRETVP 201
            AP S  P    PLP   P SL  P  KPL         PP P  S   P +E++P
Sbjct: 1300 APVSLPPPAVKPLPPPAPVSLPPPAVKPLP--------PPVPQVSLPPPKQESLP 1346


>tr|A1CWU2|A1CWU2_NEOFI Putative uncharacterized protein
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_105820 PE=4 SV=1
          Length = 245

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  PQSCTPHCADPLPGRTPTSLSSPTRKPLSISHDNLLGPP 156
           P+   PH     PG  P +  SPT + L +  DN L PP
Sbjct: 39  PEQLGPHLHRQPPGEKPAAAKSPTIRALVLDKDNTLCPP 77