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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944715
Clone id YMU02A01NGRL0006_P16
Library
Length 257
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_P16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGG
TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA
CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGAATTTGACCGATCTTAAAGC
ATATTGTGAGAGCGCAAGATACAGGGAATTTCTTAGACTTCCATACCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944715|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P16, 5'
         (227 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   5.0  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   5.0  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   5.0  
sp|B0SPT4|SYA_LEPBP Alanyl-tRNA synthetase OS=Leptospira biflexa...    29   8.5  
sp|B0SGD3|SYA_LEPBA Alanyl-tRNA synthetase OS=Leptospira biflexa...    29   8.5  

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 47  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 47  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 2   ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 106
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|B0SPT4|SYA_LEPBP Alanyl-tRNA synthetase OS=Leptospira biflexa
           serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
           GN=alaS PE=3 SV=1
          Length = 919

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +2

Query: 8   DEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKNLTDLKAYC 187
           +E  V LG+      P GDS   G        P S  +      + GP C N  + K  C
Sbjct: 145 EERIVRLGKKDNFWGPAGDSGACG--------PCSELYLDRGPEKGGPTCGNNPNCKPGC 196

Query: 188 ESARYREFLRLPY 226
           +  RY E+  L +
Sbjct: 197 DCDRYLEYWNLVF 209


>sp|B0SGD3|SYA_LEPBA Alanyl-tRNA synthetase OS=Leptospira biflexa
           serovar Patoc (strain Patoc 1 / Ames) GN=alaS PE=3 SV=1
          Length = 919

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +2

Query: 8   DEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKNLTDLKAYC 187
           +E  V LG+      P GDS   G        P S  +      + GP C N  + K  C
Sbjct: 145 EERIVRLGKKDNFWGPAGDSGACG--------PCSELYLDRGPEKGGPTCGNNPNCKPGC 196

Query: 188 ESARYREFLRLPY 226
           +  RY E+  L +
Sbjct: 197 DCDRYLEYWNLVF 209
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 41
Score (bit) 69.3
E-value 9.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944715|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P16, 5'
         (227 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    69   9e-11
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   9e-11
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   9e-11
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    69   9e-11
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    55   2e-06
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    49   1e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    48   2e-04
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    35   0.058
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            37   0.64 
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    35   1.4  
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            33   5.5  
tr|A4H8N5|A4H8N5_LEIBR Putative uncharacterized protein OS=Leish...    33   5.5  
tr|A7B8V0|A7B8V0_9ACTO Putative uncharacterized protein OS=Actin...    33   9.3  

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCK 160
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCK
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 63


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCK 160
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCK
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 69


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCK 160
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCK
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 72


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCK 160
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCK
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCK 67


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +2

Query: 59  GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCK 160
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCK
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCK 34


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = +2

Query: 2   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
           ES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +2

Query: 2   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
           ES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 35.4 bits (80), Expect(2) = 0.058
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -2

Query: 160 LTRWSSLIHTGFCVPHAT 107
           L RWS LIHTGF VPHAT
Sbjct: 255 LARWSLLIHTGFHVPHAT 272



 Score = 23.9 bits (50), Expect(2) = 0.058
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 90  LAVLPATGLSPSGVQH 43
           L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/22 (77%), Positives = 17/22 (77%)
 Frame = -2

Query: 160 LTRWSSLIHTGFCVPHATWVGA 95
           L RWS LIHTGF VPHAT V A
Sbjct: 23  LARWSLLIHTGFHVPHATRVRA 44


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
           OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
           SV=1
          Length = 1546

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -2

Query: 160 LTRWSSLIHTGFCVPHAT 107
           L RWS LIHTGF VPHAT
Sbjct: 671 LARWSLLIHTGFHVPHAT 688