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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944717
Clone id YMU02A01NGRL0006_P19
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_P19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCAATCTCCAAACACTTACACAGCAACTGGGAGAGAGGTGTTTGGACTTGGATGCTGGAC
AAGGTCTTATTTCACCATCTCTGGATTAGAGATCTACAGTTCAAAAAATGGTATGATTGA
CAACAGCAGTCCATCTTTCGGAATGTGAAGCAAGGACCCTTGAATTGTGGTATAGAACCT
ACGTGGGAAGTTACTACCTATGGAATTGGGGTGTGTAGGGGCAGTACTCTTGGAACAAAA
GAGAGAAGATCTGTAACAAATGTGAGAGGGTCAGACTGCCGTGATTTGGAGGAAGGACAC
AATTTATTTATTGCAACTTCTCGAATCAAATTCACTTGAGTGATGACAAAAGAAACACAT
TGGAGAGTCCCTTTTGATCAACTTGATCTGTATTGATTTGTGGTCAGAACTTTGCTAAAT
GAATTCTTCCATGTTTTTCCCTCTGATAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9VQ89
Definition sp|Q9VQ89|MIO_DROME WD repeat-containing protein mio OS=Drosophila melanogaster
Align length 58
Score (bit) 32.7
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944717|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P19, 5'
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VQ89|MIO_DROME WD repeat-containing protein mio OS=Drosophi...    33   0.71 
sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydro...    32   0.95 
sp|Q07349|YD027_YEAST Uncharacterized protein YDL027C OS=Sacchar...    32   1.6  
sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles walt...    31   2.1  
sp|Q2QNF7|DAPF_ORYSJ Putative diaminopimelate epimerase, chlorop...    31   2.8  
sp|A2ZLS4|DAPF_ORYSI Putative diaminopimelate epimerase, chlorop...    31   2.8  
sp|Q8IWR0|Z3H7A_HUMAN Zinc finger CCCH domain-containing protein...    30   4.7  
sp|O52194|ALGX_AZOVI Alginate biosynthesis protein algX OS=Azoto...    30   6.1  
sp|Q0V8T9|CTP5A_MOUSE Contactin associated protein like 5-1 OS=M...    29   7.8  

>sp|Q9VQ89|MIO_DROME WD repeat-containing protein mio OS=Drosophila
           melanogaster GN=mio PE=2 SV=2
          Length = 867

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 147 EARTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           E + ++ W  +Y+   +L +WG+     W KR ++  K E +R      RT F+ CNF
Sbjct: 693 EDKRIQYWIASYLD--HLNSWGL-----WEKRAELDIKIESIRPSSRSSRTVFLSCNF 743


>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal
           hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2
          Length = 892

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 205 IGVCRGSTLGTKERRSVTNVRGSDCRDLEEGHNLFIATSR 324
           IGVC  S    +ERR VT +      DL+EG+  F+ ++R
Sbjct: 10  IGVCESSYTPEEERRIVTELNNEAEADLKEGNLYFVISNR 49


>sp|Q07349|YD027_YEAST Uncharacterized protein YDL027C
           OS=Saccharomyces cerevisiae GN=YDL027C PE=1 SV=1
          Length = 420

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 209 PIP*VVTSHVGSIPQFKGPCFTFRKMDCCCQSY 111
           P+P  +TS   +IP+++G  F FRK+ C   +Y
Sbjct: 44  PVPSAITSP--AIPKYRGESFQFRKLSCISSNY 74


>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltlii
           PE=1 SV=2
          Length = 625

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 290 SKSRQSDPLTFVTDLLSFVPRVLPLH---TPIP*VVTSHVGSIPQFKGP 153
           S+  +SDP+ F+TD+ SF+ +    H    P   V+ +   S  +FKGP
Sbjct: 381 SRLNESDPIAFLTDIKSFIEKCCEEHRKGVPAESVLVNKELSQGRFKGP 429


>sp|Q2QNF7|DAPF_ORYSJ Putative diaminopimelate epimerase,
           chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF
           PE=3 SV=1
          Length = 354

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 181 TWEVTTYGIGVCRGSTLGTKERR--SVTNVRGSDCRDLEEGHNLFIATSRIKFT*VMTK 351
           TW+VT   +G     T GTKE +   V +++ SD     E H +F A +  +F  V+++
Sbjct: 221 TWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSR 279


>sp|A2ZLS4|DAPF_ORYSI Putative diaminopimelate epimerase,
           chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3
           SV=1
          Length = 357

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 181 TWEVTTYGIGVCRGSTLGTKERR--SVTNVRGSDCRDLEEGHNLFIATSRIKFT*VMTK 351
           TW+VT   +G     T GTKE +   V +++ SD     E H +F A +  +F  V+++
Sbjct: 224 TWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSR 282


>sp|Q8IWR0|Z3H7A_HUMAN Zinc finger CCCH domain-containing protein 7A
           OS=Homo sapiens GN=ZC3H7A PE=1 SV=1
          Length = 971

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +1

Query: 19  HSNWERGVWTWM-----LDKVLFHHLWIRDLQFKKWYD*QQQSIFRNVKQ 153
           HS  ER VWT+M      D   F+ LW++  + +K  D   QS   N KQ
Sbjct: 794 HSPEEREVWTYMKENGIQDMEQFYELWLKSQKNEKSEDIASQSNKENGKQ 843


>sp|O52194|ALGX_AZOVI Alginate biosynthesis protein algX
           OS=Azotobacter vinelandii GN=algX PE=3 SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 255 YRSSLFCSKSTAPTHPNSIGSNFPRRFYTTIQGS 154
           YR+   C    A   PNS  SN+ + F T +QG+
Sbjct: 37  YRAESCCDLCPAAADPNSYTSNYMKGFVTLVQGN 70


>sp|Q0V8T9|CTP5A_MOUSE Contactin associated protein like 5-1 OS=Mus
           musculus GN=Cntnap5a PE=2 SV=1
          Length = 1304

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 131 DCCCQSYHFLNCRSLIQRW*NKT-LSSIQVQTPLSQLL 21
           + C  S HF NC + I  W N T L S +   P++Q++
Sbjct: 726 ESCLDSRHFCNCDADIDEWANDTGLFSFKDHLPVTQII 763
tr_hit_id B4JR08
Definition tr|B4JR08|B4JR08_DROGR GH13084 OS=Drosophila grimshawi
Align length 56
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944717|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P19, 5'
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4JR08|B4JR08_DROGR GH13084 OS=Drosophila grimshawi GN=GH1308...    34   4.1  
tr|A1CQC8|A1CQC8_ASPCL Mitochondrial inner membrane translocase ...    33   7.2  
tr|B2GG53|B2GG53_KOCRD Phosphate transport system permease prote...    33   9.1  
tr|Q29MJ3|Q29MJ3_DROPS GA20081 OS=Drosophila pseudoobscura pseud...    33   9.1  
tr|B4Q7P3|B4Q7P3_DROSI GD23137 OS=Drosophila simulans GN=GD23137...    33   9.1  
tr|B4I2G4|B4I2G4_DROSE GM18321 OS=Drosophila sechellia GN=GM1832...    33   9.1  
tr|B4G955|B4G955_DROPE GL18708 OS=Drosophila persimilis GN=GL187...    33   9.1  
tr|Q7QKK0|Q7QKK0_ANOGA AGAP003281-PA (Fragment) OS=Anopheles gam...    33   9.4  
tr|Q4WTB9|Q4WTB9_ASPFU Mitochondrial inner membrane translocase ...    33   9.4  
tr|B0XQA7|B0XQA7_ASPFC Mitochondrial inner membrane translocase ...    33   9.4  
tr|A1D392|A1D392_NEOFI Mitochondrial inner membrane translocase ...    33   9.4  

>tr|B4JR08|B4JR08_DROGR GH13084 OS=Drosophila grimshawi GN=GH13084
           PE=4 SV=1
          Length = 883

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 153 RTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           + ++ W  +Y+   YL +WG+     W KR ++  K E +R      RT F+ CNF
Sbjct: 705 KRIQYWIASYLD--YLNSWGL-----WEKRAELDIKIENIRPSARSSRTVFLSCNF 753


>tr|A1CQC8|A1CQC8_ASPCL Mitochondrial inner membrane translocase
           subunit TIM44, putative OS=Aspergillus clavatus
           GN=ACLA_025660 PE=4 SV=1
          Length = 512

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 121 QQQSIFRNVKQGPLNCGIEPTWEVTTYGIGVCR 219
           Q+  ++RNVK G L  G+E   ++ TY IG+ R
Sbjct: 454 QEVHVYRNVKSGELAAGMEDKVQLVTYAIGLTR 486


>tr|B2GG53|B2GG53_KOCRD Phosphate transport system permease protein
           OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC
           12708 / DC2201) GN=pstC PE=4 SV=1
          Length = 315

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
 Frame = -2

Query: 347 VITQVNLIREVAINKLCPSSKSRQSDPLTFVTDLLSFVPRVL----------PLHTPIP* 198
           + T V ++  + I+   P+  SR   P+ +V DLL+ +P V+          P   P+  
Sbjct: 89  IATPVGILVALYISHYAPARVSR---PVGYVIDLLAAIPSVIFGAWGATVLAPALVPLYT 145

Query: 197 VVTSHVGSIPQFKGP 153
            ++ H+G IP F GP
Sbjct: 146 WLSEHLGFIPFFGGP 160


>tr|Q29MJ3|Q29MJ3_DROPS GA20081 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA20081 PE=4 SV=1
          Length = 870

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 153 RTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           + ++ W  +Y+   YL +WG+     W KR ++  K E +R      RT ++ CNF
Sbjct: 698 KRIQYWISSYLD--YLNSWGL-----WEKRAELDIKIEGIRASARSSRTVYLSCNF 746


>tr|B4Q7P3|B4Q7P3_DROSI GD23137 OS=Drosophila simulans GN=GD23137
           PE=4 SV=1
          Length = 867

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 147 EARTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           E + ++ W  +Y+   +L +WG+     W KR ++  K E +R      RT F+ CNF
Sbjct: 693 EDKRIQYWIASYLD--HLNSWGL-----WEKRAELDIKIESIRPSSRSSRTVFLSCNF 743


>tr|B4I2G4|B4I2G4_DROSE GM18321 OS=Drosophila sechellia GN=GM18321
           PE=4 SV=1
          Length = 867

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 147 EARTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           E + ++ W  +Y+   +L +WG+     W KR ++  K E +R      RT F+ CNF
Sbjct: 693 EDKRIQYWIASYLD--HLNSWGL-----WEKRAELDIKIESIRPSSRSSRTVFLSCNF 743


>tr|B4G955|B4G955_DROPE GL18708 OS=Drosophila persimilis GN=GL18708
           PE=4 SV=1
          Length = 870

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 153 RTLELWYRTYVGSYYLWNWGV*GQYSWNKREKICNKCERVRLP*FGGRTQFIYCNF 320
           + ++ W  +Y+   YL +WG+     W KR ++  K E +R      RT ++ CNF
Sbjct: 698 KRIQYWISSYLD--YLNSWGL-----WEKRAELDIKIEGIRASARSSRTVYLSCNF 746


>tr|Q7QKK0|Q7QKK0_ANOGA AGAP003281-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP003281 PE=4 SV=4
          Length = 437

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 366 SPMCFFCHHSSEFDSRSC 313
           SP  FFCHH   FD RSC
Sbjct: 125 SPSLFFCHHRKGFDGRSC 142


>tr|Q4WTB9|Q4WTB9_ASPFU Mitochondrial inner membrane translocase
           subunit TIM44, putative OS=Aspergillus fumigatus
           GN=AFUA_1G09840 PE=4 SV=1
          Length = 523

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 121 QQQSIFRNVKQGPLNCGIEPTWEVTTYGIGVCR 219
           Q+  ++RNVK G L  G+E   ++ TY IG+ R
Sbjct: 465 QEVHVYRNVKTGELAAGMEDKVQLVTYAIGLTR 497


>tr|B0XQA7|B0XQA7_ASPFC Mitochondrial inner membrane translocase
           subunit TIM44, putative OS=Aspergillus fumigatus (strain
           CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_009290 PE=4
           SV=1
          Length = 523

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 121 QQQSIFRNVKQGPLNCGIEPTWEVTTYGIGVCR 219
           Q+  ++RNVK G L  G+E   ++ TY IG+ R
Sbjct: 465 QEVHVYRNVKTGELAAGMEDKVQLVTYAIGLTR 497