DK944718 |
Clone id |
YMU02A01NGRL0006_P20 |
Library |
YMU02 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_P20. 5' end sequence. |
Accession |
DK944718 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL192Contig1 |
Sequence |
GGACAAGCTCTGGGACGATGTCGTTGCTGGCCCCCAGCCTGAAAGGGGCCTTGGTCGACT GCGTGGAAAGCCTAGAGTTTCTGAAGAATTGAATGCTGGCCCTGAGGAGTTGAAGCGATT GACGGACCGCCGCCGAAGTGGAGATTTTGCTACTGAGCAAGAGGAGGCAAGGCGTGTTTC TCAGAGCATTGCAATTGCCAAACCCCCACCTTTGCTCATCGAGTCCCTTGATTCGGAGCC AGGCTCGACACCTTCCACTCCGGGGGCAGTCCGGACTCCGTCATCTTCTTTTGTGGGATC TCCTGTTTTTGACAAGCTTCCAAGATCAGGTTCTATGCCCATTTCCCCAGCTTTGGGCTC CCCTGCTGCGCGGGAGCGGGAGAATGTTTGGACTACCGTATTCCATCCTGGGAGTAACAA GGCTATGAAGAAACTTGGATCTCAGAAGTTTGACAAACAAGCACCTAATTCTCCAACTGT ATATGATTGGCTCTACAGCAAGGATACCAAGTCAACCTGGCGCTGAAGTGGAGTGGATTT CTTCGCCCCCTGGAGCTTACTTCACCTTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q05349 |
Definition |
sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa |
Align length |
171 |
Score (bit) |
94.0 |
E-value |
5.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944718|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_P20, 5' (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragari... 94 5e-19 sp|P36311|VNCS_PAVL3 Non-capsid protein NS-1 OS=Parvovirus LuIII... 36 0.15 sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candi... 36 0.15 sp|Q9C0C2|TB182_HUMAN 182 kDa tankyrase 1-binding protein OS=Hom... 35 0.26 sp|Q9R0I7|YLPM1_MOUSE YLP motif-containing protein 1 OS=Mus musc... 34 0.58 sp|Q6AYU3|DNJB6_RAT DnaJ homolog subfamily B member 6 OS=Rattus ... 34 0.58 sp|P33479|IE18_SUHVK Immediate-early protein IE180 OS=Suid herpe... 33 0.76 sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing prot... 33 0.99 sp|P13666|SRCA_RABIT Sarcalumenin OS=Oryctolagus cuniculus GN=SR... 33 1.0 sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus mus... 33 1.3 sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats pr... 33 1.3 sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo sa... 33 1.3 sp|P11675|IE18_SUHVF Immediate-early protein IE180 OS=Suid herpe... 33 1.3 sp|Q7Q6S8|MED14_ANOGA Mediator of RNA polymerase II transcriptio... 32 1.7 sp|P49750|YLPM1_HUMAN YLP motif-containing protein 1 OS=Homo sap... 32 2.2 sp|Q96EB6|SIRT1_HUMAN NAD-dependent deacetylase sirtuin-1 OS=Hom... 32 2.2 sp|Q6CBW0|NST1_YARLI Stress response protein NST1 OS=Yarrowia li... 32 2.2 sp|Q0S219|IF2_RHOSR Translation initiation factor IF-2 OS=Rhodoc... 32 2.2 sp|Q54SZ6|Y8359_DICDI Putative uncharacterized protein DDB_G0282... 32 2.9 sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2 OS=Stre... 32 2.9 sp|Q8KFT1|IF2_CHLTE Translation initiation factor IF-2 OS=Chloro... 32 2.9 sp|P23614|CP23_CHICK 23 kDa cortical cytoskeleton-associated pro... 32 2.9 sp|Q6ZRI6|CO039_HUMAN Uncharacterized protein C15orf39 OS=Homo s... 32 2.9 sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo ... 32 2.9 sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=... 31 3.8 sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS... 31 3.8 sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats pr... 31 3.8 sp|A9FI02|QUEA_SORC5 S-adenosylmethionine:tRNA ribosyltransferas... 31 3.8 sp|Q5PR69|K1211_MOUSE Uncharacterized protein KIAA1211 OS=Mus mu... 31 3.8 sp|Q5JR59|K0774_HUMAN Uncharacterized protein KIAA0774 OS=Homo s... 31 3.8
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1 Length = 111
Score = 94.0 bits (232), Expect = 5e-19 Identities = 61/171 (35%), Positives = 77/171 (45%) Frame = +2
Query: 2 DKLWDDVVAGPQPERGLGRLRGKPRVSEELNAGPEELKRLTDRRRSGDFATEQEEARRVS 181 DKLWDD+VAGPQPERGLG LR +V + LN E Sbjct: 5 DKLWDDIVAGPQPERGLGMLR---KVPQPLNLKDE------------------------G 37
Query: 182 QSIAIAKPPPLLIESLDSEPGSTPSTPGAVRTPSSSFVGSPVFDKLPRSGSMPISPALGS 361 +S I P +TP+TP TP S+ Sbjct: 38 ESSKITMP-------------TTPTTPVTPTTPISA------------------------ 60
Query: 362 PAARERENVWTTVFHPGSNKAMKKLGSQKFDKQAPNSPTVYDWLYSKDTKS 514 ++NVW +VFHPGSN + K +G+Q FD PNSPTVYDW+YS +T+S Sbjct: 61 ----RKDNVWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDWMYSGETRS 107
>sp|P36311|VNCS_PAVL3 Non-capsid protein NS-1 OS=Parvovirus LuIII GN=NS1 PE=3 SV=1 Length = 668
Score = 35.8 bits (81), Expect = 0.15 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2
Query: 107 ELKRLTDRRRSGDFATEQEEARRVSQSIAIAKPPPLLIESLDSEPGSTPSTP--GAVRTP 280 E K T+ G + ++ +SQ+ A+ P +E L EP STPSTP G V+TP Sbjct: 566 EPKVTTEINSVGSTNSPSPKSTPLSQNYALT---PSDLEDLALEPWSTPSTPVVGTVKTP 622
Query: 281 SSSFVGSPVFDKLPRS 328 ++ GS + RS Sbjct: 623 NTGETGSTACQEAQRS 638
>sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candida glabrata GN=SEC16 PE=3 SV=1 Length = 2238
Score = 35.8 bits (81), Expect = 0.15 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Frame = +2
Query: 104 EELKRLTDRRRSGDFATEQEEARRVSQSIAIAKPPPLLIESLDSEPGSTPSTPGAVRTPS 283 E+LKR ++ A+E+++ Q +A PPP +++ D+EP + P + V Sbjct: 2125 EQLKRWVNKN-----ASEEDK-----QQLATPAPPPPIVKRKDTEPKTKPRSISGVTPHL 2174
Query: 284 SSFVGSPVFDKLPRSGSMPISPALGSPAAREREN----VWTTVFHPGSNKAMKKLGSQKF 451 + +GS + P SG+ P P G A + + T P ++ KK G + + Sbjct: 2175 DTGIGSSI---PPISGNAPPKPKSGPSLAAKTNGLDDLLNLTAAAPATSTRRKKKGGRGY 2231
>sp|Q9C0C2|TB182_HUMAN 182 kDa tankyrase 1-binding protein OS=Homo sapiens GN=TNKS1BP1 PE=1 SV=3 Length = 1729
Score = 35.0 bits (79), Expect = 0.26 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 4/139 (2%) Frame = +2
Query: 17 DVVAGPQPERGLGR-LRGKPRVSEELNAGPEELKRLTDRRRSGDFATEQEEARRVSQSIA 193 +++AGPQP G R L PR + E + G E + T +EEA + Sbjct: 82 NMLAGPQPYGGSKRPLPFAPRPAVEASTGGEATQE-----------TGKEEAGK------ 124
Query: 194 IAKPPPLLIESLDSEPGSTPSTPGAVRTPSSSFVGSPVFDKLPRSGSMPISPALGSPAAR 373 +PPPL + + PG P R S F + V + L + P L SP Sbjct: 125 -EEPPPLTPPARCAAPGGVRKAPAPFRPASERFAATTVEEILAKM-EQPRKEVLASP--- 179
Query: 374 ERENVW---TTVFHPGSNK 421 + +W T H GS++ Sbjct: 180 --DRLWGSRLTFNHDGSSR 196
>sp|Q9R0I7|YLPM1_MOUSE YLP motif-containing protein 1 OS=Mus musculus GN=Ylpm1 PE=2 SV=1 Length = 1386
Score = 33.9 bits (76), Expect = 0.58 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 11/104 (10%) Frame = +2
Query: 203 PPPLLIESLDSEPGSTPSTPGAVRTPSSSFVGSP-----------VFDKLPRSGSMPISP 349 PP L+ L+S P S P PG+ PS S++ P LP + P P Sbjct: 136 PPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLPPAQPSPSKP 195
Query: 350 ALGSPAARERENVWTTVFHPGSNKAMKKLGSQKFDKQAPNSPTV 481 L P + N P + A K QK P+ T+ Sbjct: 196 QLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQKQAAPEPDPSTM 239
>sp|Q6AYU3|DNJB6_RAT DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=2 SV=1 Length = 357
Score = 33.9 bits (76), Expect = 0.58 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Frame = +2
Query: 65 GKPRVSEELNAGPEELKRLTDRRRSGDFATEQEEARRVSQSIAIAK---PPPLLIESLDS 235 G+ RV E + +LK LT + + A +E RR + A+A P P + S Sbjct: 213 GQERVEVEEDG---QLKSLTINGVADENALAEECRRRGQPTPALAPGPAPAPARVPSQAR 269
Query: 236 EPGSTPSTPGAVRTPSSSFVGSPVFDKLPRSGSMPISPALGSPAARERENVWTTVFHPGS 415 P P TP +TP+ S P P + +S + ++R+ V P + Sbjct: 270 PPTPAP-TPAPAQTPAPSVSTRPQKPPRPAPTAKLVSKSNWEDEEQDRQRVPGNCDAPMT 328
Query: 416 NKAMKKLGSQKFDKQAPNS 472 + +K+ G +K KQ +S Sbjct: 329 SAGLKEGGKRKKQKQKEDS 347
>sp|P33479|IE18_SUHVK Immediate-early protein IE180 OS=Suid herpesvirus 1 (strain Kaplan) GN=IE PE=3 SV=1 Length = 1446
Score = 33.5 bits (75), Expect = 0.76 Identities = 20/64 (31%), Positives = 28/64 (43%) Frame = +2
Query: 188 IAIAKPPPLLIESLDSEPGSTPSTPGAVRTPSSSFVGSPVFDKLPRSGSMPISPALGSPA 367 + + P P + PGS PS+P + ++ SS+ S L S SPA G Sbjct: 820 LVVPAPAPAAAGAPSGLPGSGPSSPASTKSSSSTKSSSSTKSGLSGSSGYASSPAAGPDP 879
Query: 368 ARER 379 A ER Sbjct: 880 APER 883
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens GN=ARID1A PE=1 SV=3 Length = 2285
Score = 33.1 bits (74), Expect = 0.99 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Frame = +2
Query: 29 GPQPERGLGRLRGKPRVSEELNAGPEELKRLTDRRRSGDFATEQEEARRVSQSIAIAKPP 208 G Q + L L+ +P +L+ ++L T+ S +T + + QS P Sbjct: 623 GGQEDMNLS-LQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSP- 680
Query: 209 PLLIESLDSEPGSTPSTPGAVRTPSSSFVGSPVFDKLPRSGSMPISPAL---GSPAARER 379 P ++P PG +R PS S VGSP RSG P+SPA R Sbjct: 681 --------FSPHTSPHLPG-IRGPSPSPVGSPASVAQSRSG--PLSPAAVPGNQMPPRPP 729
Query: 380 ENVWTTVFHPGSNKA 424 ++ HP N++ Sbjct: 730 SGQSDSIMHPSMNQS 744
>sp|P13666|SRCA_RABIT Sarcalumenin OS=Oryctolagus cuniculus GN=SRL PE=2 SV=1 Length = 908
Score = 33.1 bits (74), Expect = 1.0 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = -1
Query: 378 RSRAAGEPKAGEMGIEPDLGSLSKTGDPTKEDDGVRTAPGVEGVEPGSESRDSMSKGG 205 R GE + E G E GS + GDP++ED G + G E G+ S ++ G Sbjct: 354 RQDEGGEASSEEEGDEEG-GSEEEEGDPSEEDSGEDSGDGASSEEAGAASEEASGTAG 410
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 Length = 1213
Score = 32.7 bits (73), Expect = 1.3 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Frame = +2
Query: 176 VSQSIAIAKPPPLLIESLDSEPGSTPSTPGAVRTPSSSF-VGSPVFDKLPRS----GSMP 340 ++ SI+I PPP +L P PG + P+ + +P+ LP + S+P Sbjct: 1101 LADSISINLPPP---PNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLP 1157
Query: 341 ISPALGSPAAR 373 + P LGS AA+ Sbjct: 1158 LGPGLGSAAAQ 1168
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NPP3 |
Definition |
tr|A9NPP3|A9NPP3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
177 |
Score (bit) |
110.0 |
E-value |
7.0e-23 |
Report |
|