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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944721
Clone id YMU02A01NGRL0006_P23
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_P23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGTTTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTGATCTGAT
GCGCGAGTGCCAACACACAGAAAGAGAGAGAGAGAGAGAGAGAGAGACGATTGGGGAATA
TCTCGCTAGAAACAAGGACAGAAATGATATTTCTGTATGTACGCTACCTGCTCGCTTTCT
TTACATTGATGCCACTACATTGATCTTCTCATGCAGTGGCCATGGCAGTGATGGCAGCAA
CAGACATGGCTTTGAGTGCGATGCCTTCCATGGCAGCAGTCACAAGGGCAGACTGCAAGC
CATCGAGGAGGGCGGTATCGCTGGGTAGGAAGATGAAGAGCTTCTCAGGTATGAAATCAG
AGAGTCGAATTGGCAGGCTCGGGCTTTCTGAAAGCACAGAGGAGCATTTTGCGAGGGCTG
TGTTGGCGCACGCGAGAAGTACGGCTGGGAGCAGAGGGGGGGCTGCTTCTTCTACTTGCA
ATGTTGCAGACGAGATCTTTCGCGTGGTGCCCATCATGAGTGGCCTTGTGCTCATTGGCA
TCGCTCTTG
■■Homology search results ■■ -
sp_hit_id Q9QY30
Definition sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus
Align length 47
Score (bit) 33.9
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944721|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P23, 5'
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus GN=A...    34   0.53 
sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment...    32   2.0  
sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila me...    30   7.7  

>sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus
           GN=Abcb11 PE=1 SV=1
          Length = 1321

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 233 GSNRHGFECDAFHGSSHKGRLQXXXXXXXXXXXXXXLLRYEIRESNW 373
           G   H FE D FH +  K RLQ              L R+   + NW
Sbjct: 14  GEENHAFESDGFHNNDKKSRLQDKKKGEGARVGFFELFRFSSSKDNW 60


>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment)
           OS=Spinacia oleracea GN=petM PE=1 SV=1
          Length = 36

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 480 NVADEIFRVVPIMSGLVLIGIAL 548
           N A EIFR+  +M+GL L+G+A+
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAI 23


>sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila
           melanogaster GN=su(s) PE=1 SV=2
          Length = 1325

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
 Frame = +2

Query: 413 EGCVGAREKYGWEQRGG------CFFYLQ--CCRRDLSRGAHHEWPCAHWH 541
           EG  G +EK G   R        C FYL   C +RD     H E+PC +++
Sbjct: 313 EGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYY 363
tr_hit_id A9RKI9
Definition tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 102
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944721|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P23, 5'
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea...    57   8e-07
tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs...    54   4e-06
tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul...    50   6e-05
tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    50   8e-05
tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ...    50   1e-04
tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis...    50   1e-04
tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze...    49   2e-04
tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome...    44   0.004
tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz...    42   0.021
tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic...    41   0.036
tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido...    37   0.89 
tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho...    36   1.2  
tr|A9PK57|A9PK57_POPJC Putative uncharacterized protein OS=Popul...    35   3.4  
tr|A2AUN4|A2AUN4_MOUSE ATP-binding cassette sub-family B (MDR/TA...    34   5.8  

>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1
          Length = 112

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +3

Query: 246 MALSAMPSMAAVTRADCKPSRRAVSLG-RKMKSFSGMKSESRIGRLGLSESTEEHFARAV 422
           MA    PS+A  T    + S +   LG RK+K+FSG++ ES++ R+G+  STEE FA   
Sbjct: 1   MAAVVAPSLAVSTSTSKRSSSK---LGVRKLKNFSGLQPESQVTRMGMPVSTEEAFAN-- 55

Query: 423 LAHXXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
           +                 C+VA EIFR+VPIMSGL L+GIA+
Sbjct: 56  IRARWSGRASRGGALSANCDVASEIFRIVPIMSGLTLVGIAI 97


>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1
          Length = 90

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 34/74 (45%), Positives = 47/74 (63%)
 Frame = +3

Query: 327 RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXXXXXXXXXXXXXXCNVADEIFRV 506
           RK+K+F G+KS+S++ R+G+  STEE FA   +                 C+VA EIFR+
Sbjct: 4   RKLKNFGGLKSDSQVTRMGMPVSTEEAFAS--VKAKCSGRVSRGGALAANCDVASEIFRI 61

Query: 507 VPIMSGLVLIGIAL 548
           VPIMSGL L+GIA+
Sbjct: 62  VPIMSGLTLVGIAI 75


>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +3

Query: 297 KPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVL---AHXXXXXXXXXXXX 467
           KP    V   R +KS++G+K E+++  LG++  +++ FAR V    A             
Sbjct: 27  KPKMNKVCCVRGLKSYAGLKPENKVMNLGVAVHSDKQFARLVTMCRALKANSGGGRGGAL 86

Query: 468 XXXCNVADEIFRVVPIMSGLVLIGIAL 548
              CNVA EI  +VPIMS LVLIG+A+
Sbjct: 87  ASTCNVASEIATIVPIMSALVLIGVAV 113


>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0079B15.15 PE=4 SV=1
          Length = 118

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 31/98 (31%), Positives = 52/98 (53%)
 Frame = +3

Query: 255 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 434
           + +PS+A    A  K  R  V+    M ++SG+K+ +++  LG+ ++ +  FA+ V    
Sbjct: 8   TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 435 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
                         CN A EIFR+  IM+GLVL+G+A+
Sbjct: 66  PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAV 103


>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13659 PE=4 SV=1
          Length = 118

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 31/98 (31%), Positives = 52/98 (53%)
 Frame = +3

Query: 255 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 434
           + +PS+A    A  K  R  V+    M ++SG+K+ +++  LG+ ++ +  FA+ V    
Sbjct: 8   TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 435 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
                         CN A EIFR+  IM+GLVL+G+A+
Sbjct: 66  PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAV 103


>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 122

 Score = 50.4 bits (119), Expect = 6e-05
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
 Frame = +3

Query: 240 TDMALSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARA 419
           T  A  + P++ A   +  K  +  V+    + SF G+K+ + +  LGLS  +E+ FA+ 
Sbjct: 3   TTSATFSPPTLVASAVSSPKRKQTNVNYITGLNSFGGLKAHNSVSSLGLSVGSEQSFAKI 62

Query: 420 V--LAHXXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
           V  L                 C+   EIFR+  +M+GLVL+G+A+
Sbjct: 63  VSSLKAPSKGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAV 107


>tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
           mays PE=4 SV=1
          Length = 117

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 29/103 (28%), Positives = 52/103 (50%)
 Frame = +3

Query: 240 TDMALSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARA 419
           +  A++ +PS+AA      K     V+    M ++SG+K  +++  LG+ ++ +  FA+ 
Sbjct: 3   SSFAVATVPSLAAPA---AKKRSGGVTYVEGMNAYSGLKGLNKVNMLGVRKTADYSFAKV 59

Query: 420 VLAHXXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
           V +                 N A EIFR+   M+GLVL+G+A+
Sbjct: 60  VASLSPAGRKRRGGAFGAQMNAAAEIFRIAATMNGLVLVGVAV 102


>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001
           PE=4 SV=1
          Length = 201

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 333 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 506
           + SF G+K+ + +  LGL   TE+ FA+ V  L                 CN   EIFR+
Sbjct: 113 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRI 172

Query: 507 VPIMSGLVLIGIAL 548
             IM+GLVL+G+A+
Sbjct: 173 AAIMNGLVLVGVAV 186


>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027615 PE=4 SV=1
          Length = 126

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +3

Query: 333 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 506
           + SF G+K+ + +  LGL   TE+ FA+ V  L                 CN   EIFR+
Sbjct: 38  LNSFDGLKAYNSVASLGLPVCTEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRI 97

Query: 507 VPIMSGLVLIGIAL 548
             IM+GLVL+G+A+
Sbjct: 98  AAIMNGLVLVGVAV 111


>tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
           mays PE=4 SV=1
          Length = 117

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 31/100 (31%), Positives = 53/100 (53%)
 Frame = +3

Query: 249 ALSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLA 428
           A++  PS+AA   A  +P+   V+    M ++SG+K  +++  LG+ ++ +  FA+ V +
Sbjct: 5   AVATAPSLAAPA-AKRRPAA-GVTYVEGMNAYSGLKGLNKVTMLGVRKTADYSFAKVVAS 62

Query: 429 HXXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIAL 548
                            N A EIFR+   MSGLVL+G+A+
Sbjct: 63  LSPAGRKRRGGAFGAQMNAAAEIFRIAATMSGLVLVGVAV 102