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NBDC - LSDB Archive
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DK944722
Clone id YMU02A01NGRL0006_P24
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_P24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTGCGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCTTTCATCCGCGTGCTGGGCTTTGAC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 141
Score (bit) 173.0
E-value 5.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944722|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P24, 5'
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   173   5e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   168   1e-41
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   167   2e-41
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   167   2e-41
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   167   3e-41
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   167   3e-41
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   167   3e-41
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   167   3e-41
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   167   4e-41
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   166   5e-41
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   166   5e-41
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   166   6e-41
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   166   8e-41
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   165   1e-40
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   165   1e-40
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   165   1e-40
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   164   2e-40
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   164   2e-40
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   164   2e-40
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   164   3e-40
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   163   4e-40
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   163   5e-40
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   163   5e-40
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   163   5e-40
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   162   7e-40
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   162   7e-40

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  173 bits (438), Expect = 5e-43
 Identities = 80/141 (56%), Positives = 101/141 (71%), Gaps = 5/141 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFD 523
           +E+ EC KEYP AFIRV+GFD
Sbjct: 142 KEVGECKKEYPNAFIRVIGFD 162


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  169 bits (427), Expect = 1e-41
 Identities = 76/133 (57%), Positives = 95/133 (71%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 304
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 484
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLGFD 523
            YP+ F R++GFD
Sbjct: 148 AYPDYFNRIIGFD 160


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  168 bits (426), Expect = 1e-41
 Identities = 79/140 (56%), Positives = 104/140 (74%), Gaps = 4/140 (2%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 286
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECAKEYPEAFIRVLGFD 523
           E+AEC  EYPEAFIR++GFD
Sbjct: 141 EVAECKAEYPEAFIRIIGFD 160


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
          Length = 170

 Score =  168 bits (425), Expect = 2e-41
 Identities = 78/135 (57%), Positives = 95/135 (70%), Gaps = 3/135 (2%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA-ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F GLK+T     A +S   L  +SNG R+  M VW  Y NKKFETLSYLPPLS++ + KQ
Sbjct: 17  FQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQ 76

Query: 299 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 478
           VD+++R GW PC+EF K+G VYRE+     YYDGRYW MWKLPMFGC DA  V +E+ E 
Sbjct: 77  VDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEA 136

Query: 479 AKEYPEAFIRVLGFD 523
            K YP+AF RV+GFD
Sbjct: 137 IKSYPDAFHRVIGFD 151


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  168 bits (425), Expect = 2e-41
 Identities = 78/136 (57%), Positives = 100/136 (73%), Gaps = 4/136 (2%)
 Frame = +2

Query: 128 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 476 CAKEYPEAFIRVLGFD 523
           C KEYP+A+IR++GFD
Sbjct: 145 CKKEYPQAWIRIIGFD 160


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  167 bits (424), Expect = 2e-41
 Identities = 81/137 (59%), Positives = 100/137 (72%), Gaps = 5/137 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC K YP AFIR++GFD
Sbjct: 148 ECKKAYPSAFIRIIGFD 164


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  167 bits (424), Expect = 2e-41
 Identities = 77/137 (56%), Positives = 100/137 (72%), Gaps = 5/137 (3%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC KEYP AFIR++GFD
Sbjct: 144 ECKKEYPNAFIRIIGFD 160


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  167 bits (423), Expect = 3e-41
 Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 4/136 (2%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 476 CAKEYPEAFIRVLGFD 523
             K YP++FIR++GFD
Sbjct: 150 AKKAYPQSFIRIIGFD 165


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  167 bits (423), Expect = 3e-41
 Identities = 77/138 (55%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 292
           SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 293 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 469
           K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC DA  VL E+
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 470 AECAKEYPEAFIRVLGFD 523
            E  K YP+A+IR++GFD
Sbjct: 145 QEAKKAYPQAWIRIIGFD 162


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  167 bits (423), Expect = 3e-41
 Identities = 79/136 (58%), Positives = 97/136 (71%), Gaps = 4/136 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFD 523
             K YPE F+R++GFD
Sbjct: 146 AKKAYPEYFVRIIGFD 161
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 136
Score (bit) 262.0
E-value 9.0e-69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944722|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_P24, 5'
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   262   9e-69
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   183   4e-45
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   180   3e-44
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   179   6e-44
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   179   7e-44
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   179   7e-44
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   176   5e-43
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   174   3e-42
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   174   3e-42
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   173   4e-42
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   170   5e-41
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   170   5e-41
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   170   5e-41
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   169   8e-41
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   168   1e-40
tr|B4FSJ3|B4FSJ3_MAIZE Putative uncharacterized protein OS=Zea m...   168   2e-40
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   167   2e-40
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   167   3e-40

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  262 bits (669), Expect = 9e-69
 Identities = 120/136 (88%), Positives = 129/136 (94%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFD 523
           CAKEYP AFIRVLGFD
Sbjct: 142 CAKEYPTAFIRVLGFD 157


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  183 bits (465), Expect = 4e-45
 Identities = 86/137 (62%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC + +P  ++RVLGFD
Sbjct: 147 ECKQSFPSCWVRVLGFD 163


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  180 bits (457), Expect = 3e-44
 Identities = 85/137 (62%), Positives = 101/137 (73%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC + +P  ++RVLGFD
Sbjct: 147 ECKQSFPSCWVRVLGFD 163


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  179 bits (455), Expect = 6e-44
 Identities = 83/137 (60%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC   YP  ++RVLGFD
Sbjct: 152 ECKTSYPSCWVRVLGFD 168


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  179 bits (454), Expect = 7e-44
 Identities = 82/137 (59%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC  ++P  ++RVLGFD
Sbjct: 182 ECKSQFPSCWVRVLGFD 198


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  179 bits (454), Expect = 7e-44
 Identities = 83/137 (60%), Positives = 101/137 (73%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC  ++P  ++RVLGFD
Sbjct: 152 ECKSQFPSCWVRVLGFD 168


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  176 bits (447), Expect = 5e-43
 Identities = 80/137 (58%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFD 523
           EC  ++P  ++RVLGFD
Sbjct: 151 ECKTQFPSCWVRVLGFD 167


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  174 bits (441), Expect = 2e-42
 Identities = 79/134 (58%), Positives = 97/134 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFD 523
           K +P  F+RVLGFD
Sbjct: 152 KTFPGCFVRVLGFD 165


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  174 bits (440), Expect = 3e-42
 Identities = 80/134 (59%), Positives = 97/134 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFD 523
           K +P  F+RVLGFD
Sbjct: 152 KTFPGCFVRVLGFD 165


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  174 bits (440), Expect = 3e-42
 Identities = 80/134 (59%), Positives = 98/134 (73%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFD 523
           K +P  F+RVLGFD
Sbjct: 152 KTFPGCFVRVLGFD 165