DK944727 [AcEST]

DK944727
Clone id	YMU02A01NGRL0007_A09
Library	YMU02
Length	550
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_A09. 5' end sequence.
Accession	DK944727
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	-
Sequence	GCCCTGCAGATCTTACAGGAAGCCCTCCGCTTCAAGCCCACCTCTCTGCACCTGTGGAAG AAGCCCTAATGGCCGTTGCAGTTCCTCAAGTCGTCATCATCGTCGTGGTTGTGATCGTGG CCCTCATCCTCCTCATGATTCTCTGCTGCGTCTGTTCCTGCTTGCGCGACTGCTTCAGCT GTGTCCGAAGCTGCCTCCCTTGTTAATGGATATGCTTTCTGCAGGCTTTTGGCTCAATGT AATATACATTTACAAGGATATCAGAACAATGTAGGCACCTTGCAGCGATTCATCTTCCTC TTCATGTGTAATGATCTTTGGATGATAATCCCTTGATTCTTGTACAGCCATACAAGGACG GTTGAGCCACCTATTTTTTAATTCTTTTTGGACCAGTCTTTTCATCAAACAGTCAGTTCC CCTTTATTTTTACATGAGCTGATAACTCANATTTATTGTCTATCACAGGTTTTCTATCCT TATTTGTTTTTCTTGAGTTAATTCCACAAATTTAATGTCTGAAAAAAAAAAAAAAAAAAA AAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q57D65
Definition	sp\|Q57D65\|SYT_BRUAB Threonyl-tRNA synthetase OS=Brucella abortus
Align length	40
Score (bit)	30.8
E-value	4.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944727\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0007_A09, 5' (521 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q57D65\|SYT_BRUAB Threonyl-tRNA synthetase OS=Brucella abortus... 31 4.0 sp\|Q2YQ07\|SYT_BRUA2 Threonyl-tRNA synthetase OS=Brucella abortus... 31 4.0 sp\|Q6ZW49\|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens ... 30 5.3 >sp\|Q57D65\|SYT_BRUAB Threonyl-tRNA synthetase OS=Brucella abortus GN=thrS PE=3 SV=1 Length = 658 Score = 30.8 bits (68), Expect = 4.0 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -2 Query: 358 SLYGCTRIKGLSSKD-HYTRGRIAARCLHCSDILVNVY 242 +L+G R++G + D H +AA CLH +D++++VY Sbjct: 378 ALHGLMRVRGFTQDDAHIFCTEEQMAAECLHINDLILSVY 417 >sp\|Q2YQ07\|SYT_BRUA2 Threonyl-tRNA synthetase OS=Brucella abortus (strain 2308) GN=thrS PE=3 SV=1 Length = 658 Score = 30.8 bits (68), Expect = 4.0 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -2 Query: 358 SLYGCTRIKGLSSKD-HYTRGRIAARCLHCSDILVNVY 242 +L+G R++G + D H +AA CLH +D++++VY Sbjct: 378 ALHGLMRVRGFTQDDAHIFCTEEQMAAECLHINDLILSVY 417 >sp\|Q6ZW49\|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=1 Length = 1035 Score = 30.4 bits (67), Expect = 5.3 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -3 Query: 414 DCLMKRLVQKELKNRWLNRPCMAVQESRD---YHPKIITHEEEDE 289 +C +KR K + W+ C++ + +D YHP++I +EEE+E Sbjct: 116 ECALKRASIKIVTPDWV-LDCVSEKTKKDEAFYHPRLIIYEEEEE 159
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944727\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0007_A09, 5' (521 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****