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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944730
Clone id YMU02A01NGRL0007_A12
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_A12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TATAACGAAGATGATGTTTCTATTTTTTCATTTTTATTCAAATGTTCCATCTGTACAAGA
TTTGAATCTCATGAGGCTGTTATAACCACCCTTGTTTGAAAGACAACACGCAAAATGGTT
CGGGCATAATTCAGGGGATCCCTTACTTGTAACCTTCATCATCTCCCCTCTGGCATGAAT
GATTTTAGGGATCACAGCGCTTTTTGACAATGTCAAAATTGTTTATTGCAAGGGGCTAAT
GTCTTCTCTCGTTGAAGCGATTATATTTTATATTTTTCCCCTAGGATAAGAAACAGTGAG
CTAACCGGTTAACCGGTAGTCACAAACTCCGACCATGTTTGCGAAAAGTCGAACTTGTTG
AGAATGCCCTTGAAGCAAGATTATGTCAAACTGTATTTTCTAAATGGCAGAAGACTTGCA
AGATCTGCACATGCAATATAAGTTTTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q57753
Definition sp|Q57753|Y305_METJA Uncharacterized protein MJ0305 OS=Methanocaldococcus jannaschii
Align length 31
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944730|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_A12, 5'
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q57753|Y305_METJA Uncharacterized protein MJ0305 OS=Methanoca...    30   3.4  
sp|Q54RC7|ISC2B_DICDI Isochorismatase family protein 2B OS=Dicty...    29   9.6  

>sp|Q57753|Y305_METJA Uncharacterized protein MJ0305
           OS=Methanocaldococcus jannaschii GN=MJ0305 PE=3 SV=1
          Length = 395

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 191 ITALFDNVKIVYC-KGLMSSLVEAIIFYIFP 280
           I++ FDN+KI YC K L+  ++ A+I Y  P
Sbjct: 236 ISSTFDNLKIPYCIKTLIGGILVAVISYFIP 266


>sp|Q54RC7|ISC2B_DICDI Isochorismatase family protein 2B
           OS=Dictyostelium discoideum GN=DDB_G0283199 PE=3 SV=1
          Length = 214

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 146 VRDPLNYARTILRVVFQTRVVI 81
           VRDP NY RT++   F+T V I
Sbjct: 98  VRDPTNYLRTVILAGFETHVCI 119
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944730|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_A12, 5'
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******