DK944735
Clone id YMU02A01NGRL0007_A18
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_A18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CTTCCTCGTTCGACTGCGCTCCTGCGGCACGATGCCTTCCCATAAGACCTTCATCATCAA
GAAGAAGCTCGCGAAGAAGCAGAGGCAAAACCGTCCCATCCCGCATTGGATCCGCATGCG
CACCGACAACACCATCAGGTACAATGCCAAGCGAAGGCACTGGAGAAGAACCAAGCTTGG
TTTGTAGAAATGCTGCGAGCTAAGTCACATTTTTGACAAATGTAGTAATTGCTTTGTTTA
AGTGGGGGAATCTGTCCTAGGGGGTAATGTTTCAACTTGTACCTCCTGGCGGGTTTTGCC
CATGATGACTAAAAATGTATTGGGATTGAGAATACNAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id P51424
Definition sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis thaliana
Align length 50
Score (bit) 80.9
E-value 2.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944735|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_A18, 5'
(336 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis... 81 2e-15
sp|P51426|RL39_ORYSJ 60S ribosomal protein L39 OS=Oryza sativa s... 80 4e-15
sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RP... 80 4e-15
sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis... 76 6e-14
sp|Q96W55|RL39_CANAL 60S ribosomal protein L39 OS=Candida albica... 73 4e-13
sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicu... 71 2e-12
sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus G... 71 2e-12
sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 OS=Ictalurus punc... 71 2e-12
sp|P62891|RL39_HUMAN 60S ribosomal protein L39 OS=Homo sapiens G... 71 2e-12
sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 OS=Gallus gallus ... 71 2e-12
sp|Q3T051|RL39_BOVIN 60S ribosomal protein L39 OS=Bos taurus GN=... 71 2e-12
sp|Q59GN2|R39L5_HUMAN Putative 60S ribosomal protein L39-like 5 ... 70 4e-12
sp|P05767|RL39_SCHPO 60S ribosomal protein L39 OS=Schizosaccharo... 69 7e-12
sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39 OS=Debaryomyces h... 69 7e-12
sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 OS=Spodoptera fru... 69 1e-11
sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39 OS=Plutella xylos... 69 1e-11
sp|Q758D8|RL39_ASHGO 60S ribosomal protein L39 OS=Ashbya gossypi... 66 5e-11
sp|P52814|RL39_CAEEL 60S ribosomal protein L39 OS=Caenorhabditis... 66 6e-11
sp|Q6CW22|RL39_KLULA 60S ribosomal protein L39 OS=Kluyveromyces ... 65 1e-10
sp|Q96EH5|RL39L_HUMAN 60S ribosomal protein L39-like OS=Homo sap... 65 1e-10
sp|P04650|RL39_YEAST 60S ribosomal protein L39 OS=Saccharomyces ... 65 1e-10
sp|P48536|RL39_KLUMA 60S ribosomal protein L39 OS=Kluyveromyces ... 64 2e-10
sp|O16130|RL39_DROME 60S ribosomal protein L39 OS=Drosophila mel... 64 2e-10
sp|P59472|RL39_AERPE 50S ribosomal protein L39e OS=Aeropyrum per... 45 1e-04
sp|O27650|RL39_METTH 50S ribosomal protein L39e OS=Methanobacter... 45 1e-04
sp|A2BN55|RL39_HYPBU 50S ribosomal protein L39e OS=Hyperthermus ... 44 2e-04
sp|P59473|RL39_PYRHO 50S ribosomal protein L39e OS=Pyrococcus ho... 44 3e-04
sp|A8MAL5|RL39_CALMQ 50S ribosomal protein L39e OS=Caldivirga ma... 44 3e-04
sp|Q9UYI8|RL39_PYRAB 50S ribosomal protein L39e OS=Pyrococcus ab... 43 6e-04
sp|Q5JGT6|RL39_PYRKO 50S ribosomal protein L39e OS=Pyrococcus ko... 42 7e-04

>sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis
thaliana GN=RPL39A PE=2 SV=2
Length = 51

Score = 80.9 bits (198), Expect = 2e-15
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50


>sp|P51426|RL39_ORYSJ 60S ribosomal protein L39 OS=Oryza sativa
subsp. japonica GN=RPL39 PE=3 SV=2
Length = 51

Score = 79.7 bits (195), Expect = 4e-15
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RPL39
PE=3 SV=1
Length = 51

Score = 79.7 bits (195), Expect = 4e-15
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis
thaliana GN=RPL39B PE=2 SV=1
Length = 51

Score = 75.9 bits (185), Expect = 6e-14
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLG 50


>sp|Q96W55|RL39_CANAL 60S ribosomal protein L39 OS=Candida albicans
GN=RPL39 PE=3 SV=1
Length = 51

Score = 73.2 bits (178), Expect = 4e-13
Identities = 32/51 (62%), Positives = 36/51 (70%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
MPS Q+QNRP+P WIR+RTDN IRYNAKRRHWRRTKLG+
Sbjct: 1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLGI 51


>sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicus
GN=Rpl39 PE=1 SV=2
Length = 51

Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
M SH Q+QNRPIP WIRM+T N IRYN+KRRHWRRTKLGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus
GN=Rpl39 PE=2 SV=2
Length = 51

Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
M SH Q+QNRPIP WIRM+T N IRYN+KRRHWRRTKLGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 OS=Ictalurus
punctatus GN=rpl39 PE=3 SV=1
Length = 51

Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
M SH Q+QNRPIP WIRM+T N IRYN+KRRHWRRTKLGL
Sbjct: 1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>sp|P62891|RL39_HUMAN 60S ribosomal protein L39 OS=Homo sapiens
GN=RPL39 PE=2 SV=2
Length = 51

Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
M SH Q+QNRPIP WIRM+T N IRYN+KRRHWRRTKLGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 OS=Gallus gallus
GN=RPL39 PE=3 SV=1
Length = 51

Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
M SH Q+QNRPIP WIRM+T N IRYN+KRRHWRRTKLGL
Sbjct: 1 MSSHKTFKIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


tr_hit_id B8LNN1
Definition tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 83.6
E-value 5.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944735|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_A18, 5'
(336 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea... 84 5e-15
tr|B6VC53|B6VC53_VERFO 60S ribosomal protein L39 OS=Vernicia for... 82 1e-14
tr|A9PC42|A9PC42_POPTR Putative uncharacterized protein OS=Popul... 82 1e-14
tr|Q6KAJ8|Q6KAJ8_ORYSJ Putative 60S ribosomal protein L39 OS=Ory... 82 2e-14
tr|Q5I7K7|Q5I7K7_WHEAT Ribosomal protein L39 OS=Triticum aestivu... 82 2e-14
tr|Q0WWV8|Q0WWV8_ARATH 60S ribosomal protein L39 OS=Arabidopsis ... 81 3e-14
tr|Q5SMI4|Q5SMI4_ORYSJ 60S ribosomal protein L39 (Putative uncha... 80 7e-14
tr|Q0DWT0|Q0DWT0_ORYSJ Os02g0797200 protein OS=Oryza sativa subs... 80 7e-14
tr|B6SP00|B6SP00_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 80 7e-14
tr|A9SKS4|A9SKS4_PHYPA Predicted protein OS=Physcomitrella paten... 80 7e-14
tr|A2YA08|A2YA08_ORYSI Putative uncharacterized protein OS=Oryza... 80 7e-14
tr|A2XAK5|A2XAK5_ORYSI Putative uncharacterized protein OS=Oryza... 80 7e-14
tr|A9TST8|A9TST8_PHYPA Predicted protein OS=Physcomitrella paten... 79 9e-14
tr|Q0DWT2|Q0DWT2_ORYSJ Os02g0796900 protein (Fragment) OS=Oryza ... 78 3e-13
tr|A8J1Q3|A8J1Q3_CHLRE Ribosomal protein L39 OS=Chlamydomonas re... 77 3e-13
tr|Q2M3Y3|Q2M3Y3_PHYIN Ribosomal protein L39 OS=Phytophthora inf... 77 6e-13
tr|B6SYU3|B6SYU3_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 77 6e-13
tr|B6SP72|B6SP72_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 77 6e-13
tr|A0NAA9|A0NAA9_ARATH Protein At2g25210 (Uncharacterized protei... 76 7e-13
tr|B6SJ78|B6SJ78_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 75 2e-12
tr|A8E6A3|A8E6A3_9BILA Putative 60S ribosomal protein L39 isofor... 75 2e-12
tr|Q7S2X9|Q7S2X9_NEUCR 60S ribosomal protein L39 OS=Neurospora c... 75 2e-12
tr|Q2H9R2|Q2H9R2_CHAGB Putative uncharacterized protein OS=Chaet... 75 2e-12
tr|B2AWK1|B2AWK1_PODAN Predicted CDS Pa_7_7430 OS=Podospora anse... 75 2e-12
tr|A6R050|A6R050_AJECN Ribosomal protein L39 OS=Ajellomyces caps... 74 3e-12
tr|A4QTS9|A4QTS9_MAGGR Ribosomal protein L39 OS=Magnaporthe gris... 74 3e-12
tr|Q0UG28|Q0UG28_PHANO Putative uncharacterized protein OS=Phaeo... 74 4e-12
tr|A4RUK8|A4RUK8_OSTLU Cytosolic 80S ribosomal protein L39; Cyto... 73 8e-12
tr|Q8ISP8|Q8ISP8_BRABE Ribosomal protein L39 OS=Branchiostoma be... 72 1e-11
tr|Q86QR6|Q86QR6_BRABE Ribosomal protein L39 OS=Branchiostoma be... 72 1e-11

>tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 51

Score = 83.6 bits (205), Expect = 5e-15
Identities = 38/51 (74%), Positives = 38/51 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
MPSH RQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 51


>tr|B6VC53|B6VC53_VERFO 60S ribosomal protein L39 OS=Vernicia fordii
GN=RPL39C PE=4 SV=1
Length = 51

Score = 82.0 bits (201), Expect = 1e-14
Identities = 37/50 (74%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|A9PC42|A9PC42_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 51

Score = 82.0 bits (201), Expect = 1e-14
Identities = 37/50 (74%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q6KAJ8|Q6KAJ8_ORYSJ Putative 60S ribosomal protein L39 OS=Oryza
sativa subsp. japonica GN=OJ1004_E04.27 PE=4 SV=1
Length = 118

Score = 81.6 bits (200), Expect = 2e-14
Identities = 37/51 (72%), Positives = 38/51 (74%)
Frame = +2

Query: 29 TMPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
TMPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 67 TMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 117


>tr|Q5I7K7|Q5I7K7_WHEAT Ribosomal protein L39 OS=Triticum aestivum
PE=4 SV=1
Length = 51

Score = 81.6 bits (200), Expect = 2e-14
Identities = 37/50 (74%), Positives = 38/50 (76%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH QRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q0WWV8|Q0WWV8_ARATH 60S ribosomal protein L39 OS=Arabidopsis
thaliana GN=At2g25210 PE=4 SV=1
Length = 51

Score = 80.9 bits (198), Expect = 3e-14
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q5SMI4|Q5SMI4_ORYSJ 60S ribosomal protein L39 (Putative
uncharacterized protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0019L07.23 PE=4 SV=1
Length = 51

Score = 79.7 bits (195), Expect = 7e-14
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q0DWT0|Q0DWT0_ORYSJ Os02g0797200 protein OS=Oryza sativa subsp.
japonica GN=Os02g0797200 PE=4 SV=1
Length = 51

Score = 79.7 bits (195), Expect = 7e-14
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|B6SP00|B6SP00_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=4
SV=1
Length = 51

Score = 79.7 bits (195), Expect = 7e-14
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 181
MPSH RQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|A9SKS4|A9SKS4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_187356 PE=4 SV=1
Length = 51

Score = 79.7 bits (195), Expect = 7e-14
Identities = 37/51 (72%), Positives = 37/51 (72%)
Frame = +2

Query: 32 MPSHXXXXXXXXXXXXQRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 184
MPS RQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL
Sbjct: 1 MPSQKTFRIKKKLAKKLRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 51