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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944747
Clone id YMU02A01NGRL0007_B06
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_B06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GACAGCGTTCTAATATTTACACGAAGATCCTGCGAAGGAGTCTGTTGGTGTTCGCGCGTT
GGCTTTGCCATCATGAGGGCTAAGTGGAAGAAGAAGAGAAAGCGAAGAAAGATGAGGCAG
AGATCGAAGTAGATCTAGTCAGCTCTGGTCTCTCTCTCGGAGCGCAAAGTCTTTTTTGAG
TGCTTGCAAGCTTTCATGGAGATTCTTCAGGTCCGACAATTTGTCCGTGCTCGACATTTT
GTTGTAAAGACATTTTGTATCTGGCGAAAACAGATCTAATTTTGATGCTTATTGTCCCGT
TGATAGTGATATTGTTTTTCGTTTTAATCCTGCCAACATTCCTCATCTGATGTATCTGAG
GAGGTTTTGGCTTCCATGTTGTTCGTATGCAGTCTCTTACATTTGGTTTTCTTTATACAC
CTTTCAATGGCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A7MQI7
Definition sp|A7MQI7|WZYE_ENTS8 Putative ECA polymerase OS=Enterobacter sakazakii (strain ATCC BAA-894)
Align length 38
Score (bit) 30.8
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944747|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_B06, 5'
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7MQI7|WZYE_ENTS8 Putative ECA polymerase OS=Enterobacter sak...    31   2.5  
sp|P20895|GLYC_HRSVL Major surface glycoprotein G OS=Human respi...    30   5.5  
sp|P49833|YCF90_ODOSI Uncharacterized protein ycf90 OS=Odontella...    29   9.3  
sp|P96041|SYA_SULSO Alanyl-tRNA synthetase OS=Sulfolobus solfata...    29   9.6  

>sp|A7MQI7|WZYE_ENTS8 Putative ECA polymerase OS=Enterobacter
           sakazakii (strain ATCC BAA-894) GN=wzyE PE=3 SV=1
          Length = 454

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 296 PVDSDIVFRFNPANIPHLMYLRRFWLPCCSYAVSYIWF 409
           P+ S +VFRFN A +P  + L+      C YAV Y+ +
Sbjct: 52  PLTSILVFRFNVAVVPAEVLLQALLSAGCFYAVYYVTY 89


>sp|P20895|GLYC_HRSVL Major surface glycoprotein G OS=Human
           respiratory syncytial virus A (strain Long) GN=G PE=3
           SV=2
          Length = 298

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
 Frame = -3

Query: 430 PLKGV*RKPNVRDCIRTTWKPKPPQIHQMRNVGRIKTKNNITINGT-----ISIKIRSVF 266
           P K    KP  +   +TT K   PQ  + + V   K     TIN T      ++   +  
Sbjct: 194 PGKKTTTKPTKKPTFKTTKKDHKPQTTKPKEVPTTKPTEEPTINTTKTNIITTLLTNNTT 253

Query: 265 ARYKMSLQQNVEHGQIVGPEESP*KLASTQKRLCAPRERPELTR 134
              K++ Q    H        SP ++++T +    P   P  TR
Sbjct: 254 GNPKLTSQMETFHSTSSEGNLSPSQVSTTSEHPSQPSSPPNTTR 297


>sp|P49833|YCF90_ODOSI Uncharacterized protein ycf90 OS=Odontella
           sinensis GN=ycf90 PE=3 SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 350 MYLRRFWLPCCSYAVSYIWFSLYTFQW 430
           +Y+ R W   C Y + + W  L T+ W
Sbjct: 255 VYITRVWKQYCPYLIRWHWTFLQTYDW 281


>sp|P96041|SYA_SULSO Alanyl-tRNA synthetase OS=Sulfolobus
           solfataricus GN=alaS PE=3 SV=2
          Length = 900

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 288 ASKLDLFSPDTKCLYNKMSSTDKLSDLKNLHESLQALKKDF 166
           A K+D  +PDT  ++ +M S +   D+KN+ E L    K F
Sbjct: 288 AGKIDPDNPDTIKIHRQMVSKELGIDIKNVEEELDRAAKVF 328
tr_hit_id B4P0N3
Definition tr|B4P0N3|B4P0N3_DROYA GE13681 OS=Drosophila yakuba
Align length 55
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944747|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_B06, 5'
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4P0N3|B4P0N3_DROYA GE13681 OS=Drosophila yakuba GN=GE13681 P...    35   1.9  
tr|B4NKM9|B4NKM9_DROWI GK13949 OS=Drosophila willistoni GN=GK139...    35   2.4  
tr|Q4WI14|Q4WI14_ASPFU F-box domain protein OS=Aspergillus fumig...    35   2.5  
tr|B0XUF1|B0XUF1_ASPFC F-box domain protein OS=Aspergillus fumig...    35   2.5  
tr|Q297P6|Q297P6_DROPS GA21739 OS=Drosophila pseudoobscura pseud...    33   7.1  
tr|B4PQH4|B4PQH4_DROYA GE26287 OS=Drosophila yakuba GN=GE26287 P...    33   7.1  
tr|B4G2U3|B4G2U3_DROPE GL23544 OS=Drosophila persimilis GN=GL235...    33   7.1  
tr|B3P420|B3P420_DROER GG19778 OS=Drosophila erecta GN=GG19778 P...    33   7.1  

>tr|B4P0N3|B4P0N3_DROYA GE13681 OS=Drosophila yakuba GN=GE13681 PE=4
           SV=1
          Length = 1784

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -3

Query: 307 TINGTISIKIRSVFARYKMSLQQNVEHGQIVGPEESP*KLASTQKRLCAPRERPE 143
           T+N TI+++ R+   R   S+Q  VE  +I    E   K   T KR C PR+ PE
Sbjct: 18  TVNRTINMRARAKKERELKSIQAKVESTKIKAKPEP--KAEDTGKRQCPPRKHPE 70


>tr|B4NKM9|B4NKM9_DROWI GK13949 OS=Drosophila willistoni GN=GK13949
           PE=4 SV=1
          Length = 556

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = -1

Query: 378 HGSQNLLRYIR*GMLAGLKRKTISLSTGQ*ASKLDLFSPDTKCLYNKMSSTDKLSDLKNL 199
           HG + + + I+ G L     +T+ +S    A +LDLFSPD  C   + +   +  ++ N 
Sbjct: 257 HGCRVIHKDIKPGNLLLTLDQTLKISDFGVAEQLDLFSPDDTCTTGQGTPAFQPPEIANG 316

Query: 198 HESLQALKKD 169
           HE+    K D
Sbjct: 317 HETFAGFKVD 326


>tr|Q4WI14|Q4WI14_ASPFU F-box domain protein OS=Aspergillus
           fumigatus GN=AFUA_2G03440 PE=4 SV=1
          Length = 974

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 397 RDCIRTTWKPKPPQIHQMRNVGRIKTKNNITINGTISIKIRSVFARYKMS 248
           R    T   P PPQ H MRN+G +   N + +  TI  K +++ + +KMS
Sbjct: 432 RSAGETQASPSPPQRHSMRNLGTLPHNNALRLEWTID-KPKTIVSGHKMS 480


>tr|B0XUF1|B0XUF1_ASPFC F-box domain protein OS=Aspergillus
           fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163)
           GN=AFUB_020510 PE=4 SV=1
          Length = 974

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 397 RDCIRTTWKPKPPQIHQMRNVGRIKTKNNITINGTISIKIRSVFARYKMS 248
           R    T   P PPQ H MRN+G +   N + +  TI  K +++ + +KMS
Sbjct: 432 RSAGETQASPSPPQRHSMRNLGTLPHNNALRLEWTID-KPKTIVSGHKMS 480


>tr|Q297P6|Q297P6_DROPS GA21739 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA21739 PE=4 SV=2
          Length = 553

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 378 HGSQNLLRYIR*GMLAGLKRKTISLSTGQ*ASKLDLFSPDTKCLYNKMSSTDKLSDLKNL 199
           H  + + + I+ G L     +T+ +S    A +LDLFSPD  C   + S   +  ++ N 
Sbjct: 269 HSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFSPDDTCTTGQGSPAFQPPEIANG 328

Query: 198 HESLQALKKD 169
           HE+    K D
Sbjct: 329 HETFAGFKVD 338


>tr|B4PQH4|B4PQH4_DROYA GE26287 OS=Drosophila yakuba GN=GE26287 PE=4
           SV=1
          Length = 567

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 378 HGSQNLLRYIR*GMLAGLKRKTISLSTGQ*ASKLDLFSPDTKCLYNKMSSTDKLSDLKNL 199
           H  + + + I+ G L     +T+ +S    A +LDLFSPD  C   + S   +  ++ N 
Sbjct: 288 HSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFSPDDTCTTGQGSPAFQPPEIANG 347

Query: 198 HESLQALKKD 169
           HE+    K D
Sbjct: 348 HETFAGFKVD 357


>tr|B4G2U3|B4G2U3_DROPE GL23544 OS=Drosophila persimilis GN=GL23544
           PE=4 SV=1
          Length = 561

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 378 HGSQNLLRYIR*GMLAGLKRKTISLSTGQ*ASKLDLFSPDTKCLYNKMSSTDKLSDLKNL 199
           H  + + + I+ G L     +T+ +S    A +LDLFSPD  C   + S   +  ++ N 
Sbjct: 277 HSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFSPDDTCTTGQGSPAFQPPEIANG 336

Query: 198 HESLQALKKD 169
           HE+    K D
Sbjct: 337 HETFAGFKVD 346


>tr|B3P420|B3P420_DROER GG19778 OS=Drosophila erecta GN=GG19778 PE=4
           SV=1
          Length = 571

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 378 HGSQNLLRYIR*GMLAGLKRKTISLSTGQ*ASKLDLFSPDTKCLYNKMSSTDKLSDLKNL 199
           H  + + + I+ G L     +T+ +S    A +LDLFSPD  C   + S   +  ++ N 
Sbjct: 290 HSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFSPDDTCTTGQGSPAFQPPEIANG 349

Query: 198 HESLQALKKD 169
           HE+    K D
Sbjct: 350 HETFAGFKVD 359