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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944753
Clone id YMU02A01NGRL0007_B13
Library
Length 292
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_B13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAGCTAAATGAAACTCACTCCCTCTACACTTGATAAGAGAAAAGGAACCCGAAAGTGTAT
GCCGGATTCTTGTGCTCCATCTTTGGCGCTGTGGCGCCCGCCTGTAGCTCTGCCATATTC
TCTGCTTTCCTATCTTCCTTTTCGGCTTCTTCGATGGGACATTCTCTCTTCTTGCCATTG
AAGTGTACCATCTGCTCTTCTCGTTTAACGGCTTCACCACTCCATGTACGAGCCGGCTCC
TCCACTGATGACGTCTCTACCACCTCTACCACTACCTCCGTGCACACTGAAG
■■Homology search results ■■ -
sp_hit_id Q9NAE2
Definition sp|Q9NAE2|HUTU_CAEEL Probable urocanate hydratase OS=Caenorhabditis elegans
Align length 38
Score (bit) 35.8
E-value 0.067
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_B13, 5'
         (292 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NAE2|HUTU_CAEEL Probable urocanate hydratase OS=Caenorhabdi...    36   0.067
sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis...    33   0.57 
sp|P23574|GBRG1_RAT Gamma-aminobutyric acid receptor subunit gam...    31   2.2  
sp|Q9R0Y8|GBRG1_MOUSE Gamma-aminobutyric acid receptor subunit g...    31   2.2  
sp|Q8N1C3|GBRG1_HUMAN Gamma-aminobutyric acid receptor subunit g...    31   2.2  
sp|A4R8N4|PAN1_MAGGR Actin cytoskeleton-regulatory complex prote...    30   2.8  
sp|Q9WGZ0|CAPSD_TTVVG Probable capsid and replication-associated...    30   4.8  
sp|Q9QUB8|CAPSD_TTVV2 Capsid protein OS=Torque teno virus (isola...    30   4.8  
sp|Q9DHA8|CAPSD_TTVV1 Probable capsid and replication-associated...    30   4.8  
sp|Q9DF50|CLSPN_XENLA Claspin OS=Xenopus laevis GN=clspn PE=1 SV=2     29   6.3  
sp|Q33BV4|YCF15_NICTO Putative uncharacterized protein ycf15 OS=...    29   8.2  
sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitocho...    29   8.2  

>sp|Q9NAE2|HUTU_CAEEL Probable urocanate hydratase OS=Caenorhabditis
           elegans GN=Y51H4A.7 PE=3 SV=2
          Length = 670

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 288 SVHGGSGRGGRDVISGGAGSYMEW*SR*TRRADGTLQW 175
           ++H G G G  DVI+GG G  ++  S   RRA+G L W
Sbjct: 584 ALHNGGGVGWGDVINGGFGIVLDGSSDAARRAEGMLNW 621


>sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis
           thaliana GN=JMT PE=1 SV=2
          Length = 389

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 164 ECPIEEAEKEDRKA----ENMAELQAGATAPKMEHKNPAYTF 51
           + P  EAEKEDR      ENM ++    T+PK  HK  A  F
Sbjct: 167 QVPCREAEKEDRTITADLENMGKIYISKTSPKSAHKAYALQF 208


>sp|P23574|GBRG1_RAT Gamma-aminobutyric acid receptor subunit
           gamma-1 OS=Rattus norvegicus GN=Gabrg1 PE=2 SV=1
          Length = 465

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 151 KKPKRKIGKQRIWQSYRRAPQRQRWSTRIRHTLSGSFSLI 32
           KKP  ++   + W+ Y+ A    R ST I HT+SG + ++
Sbjct: 221 KKPSVEVADPKYWRLYQFAFVGLRNSTEISHTISGDYIIM 260


>sp|Q9R0Y8|GBRG1_MOUSE Gamma-aminobutyric acid receptor subunit
           gamma-1 OS=Mus musculus GN=Gabrg1 PE=2 SV=1
          Length = 465

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 151 KKPKRKIGKQRIWQSYRRAPQRQRWSTRIRHTLSGSFSLI 32
           KKP  ++   + W+ Y+ A    R ST I HT+SG + ++
Sbjct: 221 KKPSVEVADPKYWRLYQFAFVGLRNSTEISHTISGDYIIM 260


>sp|Q8N1C3|GBRG1_HUMAN Gamma-aminobutyric acid receptor subunit
           gamma-1 OS=Homo sapiens GN=GABRG1 PE=2 SV=2
          Length = 465

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 151 KKPKRKIGKQRIWQSYRRAPQRQRWSTRIRHTLSGSFSLI 32
           KKP  ++   + W+ Y+ A    R ST I HT+SG + ++
Sbjct: 221 KKPSVEVADPKYWRLYQFAFVGLRNSTEITHTISGDYVIM 260


>sp|A4R8N4|PAN1_MAGGR Actin cytoskeleton-regulatory complex protein
            PAN1 OS=Magnaporthe grisea GN=PAN1 PE=3 SV=1
          Length = 1431

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 206  KREEQMVHFNGKKRECPIEEAEKEDRKAENMAELQAGATAPKMEHKNP 63
            +R E+       + E    EAE++ R AE     Q  A+APK E K P
Sbjct: 986  ERSERAAKLRQAEEEDARREAERQARLAEEQGPPQPAASAPKTEAKPP 1033


>sp|Q9WGZ0|CAPSD_TTVVG Probable capsid and replication-associated
           protein OS=Torque teno virus (isolate
           Human/Ghana/GH1/1996) GN=ORF1 PE=3 SV=1
          Length = 770

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 127 KQRIWQSYRRAPQRQRWSTRIR 62
           ++R W+ +RR P R+RW TR R
Sbjct: 9   RRRRWRRWRRRPWRRRWRTRRR 30


>sp|Q9QUB8|CAPSD_TTVV2 Capsid protein OS=Torque teno virus (isolate
           Human/Japan/TRM1/1999) GN=ORF1 PE=3 SV=1
          Length = 770

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 127 KQRIWQSYRRAPQRQRWSTRIR 62
           ++R W+ +RR P R+RW TR R
Sbjct: 9   RRRRWRRWRRRPWRRRWRTRRR 30


>sp|Q9DHA8|CAPSD_TTVV1 Probable capsid and replication-associated
           protein OS=Torque teno virus (strain VT416) GN=ORF1 PE=2
           SV=1
          Length = 770

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 127 KQRIWQSYRRAPQRQRWSTRIR 62
           ++R W+ +RR P R+RW TR R
Sbjct: 9   RRRRWRRWRRRPWRRRWRTRRR 30


>sp|Q9DF50|CLSPN_XENLA Claspin OS=Xenopus laevis GN=clspn PE=1 SV=2
          Length = 1285

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 217 VKPLNEKSRWYTSMARRENVPSKKPKRKIGKQRIWQSYRRAPQRQRWSTRIRHTLSGSFS 38
           VKP   KS    +   +E +   K KRKI K++I    RR  Q+ +     R  L+ S  
Sbjct: 149 VKPKTSKSLKKQTDTNKEEIVKNKSKRKIPKEKI---KRRTKQKSKAVAEARPNLNDSGC 205

Query: 37  LI 32
           L+
Sbjct: 206 LL 207
tr_hit_id B8BQA4
Definition tr|B8BQA4|B8BQA4_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 61
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_B13, 5'
         (292 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BQA4|B8BQA4_THAPS Predicted protein OS=Thalassiosira pseudo...    35   1.4  
tr|B8GAS5|B8GAS5_9CHLR Peptidase M23 OS=Chloroflexus aggregans D...    35   2.4  
tr|B2UYQ9|B2UYQ9_CLOBA Putative uncharacterized protein OS=Clost...    35   2.4  
tr|Q0IG93|Q0IG93_AEDAE tRNA pseudouridine synthase D OS=Aedes ae...    34   4.1  
tr|A8XIH5|A8XIH5_CAEBR Putative uncharacterized protein OS=Caeno...    33   5.4  
tr|B1IJ11|B1IJ11_CLOBK Phage related protein OS=Clostridium botu...    33   5.4  
tr|Q1JTK6|Q1JTK6_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.1  
tr|B6KUG4|B6KUG4_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.1  
tr|Q38JF5|Q38JF5_CAPAN Jasmonic acid carboxyl methyltransferase ...    33   7.1  
tr|A7T771|A7T771_NEMVE Predicted protein OS=Nematostella vectens...    33   9.2  
tr|A7SUQ1|A7SUQ1_NEMVE Predicted protein OS=Nematostella vectens...    33   9.2  
tr|Q897V8|Q897V8_CLOTE Putative uncharacterized protein OS=Clost...    33   9.3  
tr|Q0WR43|Q0WR43_ARATH S-adenosyl-L-methionine:jasmonic acid car...    33   9.3  

>tr|B8BQA4|B8BQA4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_1215 PE=4 SV=1
          Length = 342

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 236 PARTWSGEAVKREEQMVHFNGKKRECPIEEAEKEDRKAENMAELQAGATAPKMEHKNPAY 57
           P+  +S E +++       +G   +  IE  E E +KA+ + E  A A APK+E  NP  
Sbjct: 45  PSSFFSAEEMEKIIAEKGASGGSADGSIEGGEPETKKAKTLVETVASAVAPKVEELNPLL 104

Query: 56  T 54
           T
Sbjct: 105 T 105


>tr|B8GAS5|B8GAS5_9CHLR Peptidase M23 OS=Chloroflexus aggregans DSM
           9485 GN=Cagg_1763 PE=3 SV=1
          Length = 599

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 59  MPDSCAPSLALWRP--PVALPYSLLSYLPFRLLRWD 160
           M D  AP +A+W+P  P+A  Y +L+Y+PF L  +D
Sbjct: 490 MSDFAAPRVAVWQPELPIAGTYRVLAYVPFALNGYD 525


>tr|B2UYQ9|B2UYQ9_CLOBA Putative uncharacterized protein
           OS=Clostridium botulinum (strain Alaska E43 / type E3)
           GN=CLH_2944 PE=4 SV=1
          Length = 207

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 224 WSGEAVKREEQMVHFNGKKRECPIEEAEKE--DRKAENMAELQAGATAPKMEHKNPAYTF 51
           W    V  E++ V  NG++ ECP+ + EKE  +R ++ M +    A   K E K      
Sbjct: 96  WDELGVDGEKRWVVINGQRFECPLSKEEKEAFERASKTMLDYLIEADKEKEEKKEKKENI 155

Query: 50  GFLFS 36
            F F+
Sbjct: 156 DFKFN 160


>tr|Q0IG93|Q0IG93_AEDAE tRNA pseudouridine synthase D OS=Aedes
           aegypti GN=AAEL003071 PE=4 SV=1
          Length = 723

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 226 HGVVKPLNEKSRWYTSMARRENVPSKKPKRKIGKQRIWQSYRR---APQRQRW 77
           H +  P N+  +WY  +   + + S+K K K  K+ +  +YR+    P+  +W
Sbjct: 529 HDITYPANDCGKWYEDLLAEDGLSSEKLKGKTKKESLGGAYRKMIIKPENLKW 581


>tr|A8XIH5|A8XIH5_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG13687 PE=4 SV=2
          Length = 670

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 288 SVHGGSGRGGRDVISGGAGSYMEW*SR*TRRADGTLQW 175
           ++H G G G  DVI+GG G  ++      RRA+G L W
Sbjct: 584 ALHNGGGVGWGDVINGGFGLVLDGSLDAARRAEGMLNW 621


>tr|B1IJ11|B1IJ11_CLOBK Phage related protein OS=Clostridium botulinum
            (strain Okra / Type B1) GN=CLD_2068 PE=4 SV=1
          Length = 1786

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 224  WSGEAVKREEQMVHFNGKKRECPIEEAEKEDRKAENMAELQAGATAPKMEH 72
            W  E++KR + +     K  E  +EE EK D+ AE M ++ +  +A   EH
Sbjct: 1544 WKDESIKRIDDVYDAKIKAIEEQLEEEEKADKDAEEMKKINSLKSAIDFEH 1594


>tr|Q1JTK6|Q1JTK6_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii RH GN=TgIa.0080 PE=3 SV=1
          Length = 1701

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +2

Query: 8   MKLTPSTLDKRKGTRKCMPDSCAPSLALWRPPVALPYSLLSYLPF------RLLRWDILS 169
           + L+PSTL      R  +  S +PS  L  P V+L  SL +Y PF       L+ W  L 
Sbjct: 486 LSLSPSTLASPAAPRGRLDTSSSPSSGLVSPAVSLSASLSAYSPFPDPPLAALVSWTCLQ 545

Query: 170 S 172
           S
Sbjct: 546 S 546


>tr|B6KUG4|B6KUG4_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_095380 PE=4 SV=1
          Length = 1979

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +2

Query: 8   MKLTPSTLDKRKGTRKCMPDSCAPSLALWRPPVALPYSLLSYLPF------RLLRWDILS 169
           + L+PSTL      R  +  S +PS  L  P V+L  SL +Y PF       L+ W  L 
Sbjct: 693 LSLSPSTLASPAAPRGRLDTSSSPSSGLVSPAVSLSASLSAYSPFPDPPLAALVSWTCLQ 752

Query: 170 S 172
           S
Sbjct: 753 S 753


>tr|Q38JF5|Q38JF5_CAPAN Jasmonic acid carboxyl methyltransferase
           OS=Capsicum annuum PE=2 SV=1
          Length = 389

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
 Frame = -3

Query: 164 ECPIEEAEKEDRKA----ENMAELQAGATAPKMEHKNPAYTF-----GFLFS 36
           + P  EAEKEDR      ENM ++    T+PK  HK  A  F     GFL S
Sbjct: 167 QVPCREAEKEDRTITADLENMGKIYISKTSPKSAHKAYALQFQTDFLGFLRS 218


>tr|A7T771|A7T771_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g223273 PE=4 SV=1
          Length = 200

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 208 LNEKSRWYTSMARRENVPSKKPKRKIGKQRIWQSYRRAPQRQRWSTRIRHT 56
           L E+  W  ++A+ E V  K   + I K    +  ++   R++W +RI HT
Sbjct: 109 LKERIAWRGALAKAEGVKQKDDPKLIKKSLKRREKQKEKSRKQWKSRIEHT 159