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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944769
Clone id YMU02A01NGRL0007_C07
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_C07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTATGTCTCTCTTGATTCTTCAAGCTGGTGCTACTGAAGCAGCTAGCCTATGGCGTCCTC
ATTGGGCTCGTCTCTCTCCTTATCTTTCCGCGCGCATCAGCAGCAGAGGCGTCTCGTACT
ATGCCAGGCTTGTCCTGAAAACGCTTCGTGCCCCGACAAAGCTTTTCCTGCTTTGAAGCT
CGATTCAAGTAGGCGACATGTGCTTCTGATTGCAGTTTCTGCGTGCGGCGTCCTACTCTC
CTTCAACCCAGCCGCTCTCGCTCTCCTCGAAGCAGATGACGATGAGGAGCTCCTCGAGAA
GGTCAAGGAAGATCGCAAAAAGAAGATCAAGCGACGTGGGGAAATCAACTCCTTCAAAGA
GGAAACAGCATCCCTGCAAGCTGCTATTTATCAGCTAAGCAAGGCAGGCCAGGCCTTGGA
TGGAAATGACTTCTCAGCTGCAAGAAAAATACTTGGTGAAAGTCCTAGTGAGGGTTGGAT
CGCTGATGTGGAGAAGGCTTTGTCCAAGGTGAGTTCAAGTGCTGAGGAACAAGGCGAAGC
CAAGGTGTTTTCATCATCTTTGGCAAACCTGCAAATGGCAGTGAGCAAGCAGGATATCGA
TCTTTCCAAAAGTG
■■Homology search results ■■ -
sp_hit_id O22773
Definition sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana
Align length 95
Score (bit) 79.0
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944769|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C07, 5'
         (614 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chlorop...    79   2e-14
sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2 OS=Myco...    32   3.4  
sp|A5GBD1|Y902_GEOUR UPF0182 protein Gura_0902 OS=Geobacter uran...    31   4.4  
sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR OS=Actinobac...    30   7.5  
sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protei...    30   9.8  
sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protei...    30   9.8  
sp|Q2ND71|GATB_ERYLH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   9.8  
sp|O55189|AMBN_MOUSE Ameloblastin OS=Mus musculus GN=Ambn PE=2 SV=1    30   9.8  

>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 41/95 (43%), Positives = 61/95 (64%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           I+R+  +NS  +E   LQ  +Y+LSK GQA++ ND  AA  +LG+     W+  V  A +
Sbjct: 96  IERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFT 155

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSK 610
           K+S+S EE  E + F+SSLA+L  +V+K DI+ SK
Sbjct: 156 KLSTSPEENTEVEAFNSSLASLITSVNKNDIESSK 190


>sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=secA2 PE=3 SV=1
          Length = 850

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 485 DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           D+EK +S++     E  EAKV S ++ N Q  V + + D+ +S
Sbjct: 596 DLEKLMSRLKMPEREPIEAKVVSRAIRNAQSQVEQANFDMRRS 638


>sp|A5GBD1|Y902_GEOUR UPF0182 protein Gura_0902 OS=Geobacter
           uraniireducens (strain Rf4) GN=Gura_0902 PE=3 SV=1
          Length = 892

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 3   MSLLILQAGATEAASLWRPHW--ARLSPYLSARISSRGVSYYARLVLKTLRAPTKLFL 170
           +++L   AGA  AA LW+  W  A L P L   +   G+  Y  L+ K   AP +L L
Sbjct: 249 LTVLTPLAGAILAAGLWQGAWRLALLPPILVIAVYGIGIKAYPALLEKFKVAPNQLAL 306


>sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR
           OS=Actinobacillus pleuropneumoniae serotype 5b (strain
           L20) GN=nrdR PE=3 SV=1
          Length = 149

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAI----YQLSKAGQAL--DGNDFSAA-RKILGESPSEGWIA 484
           I+RR E  S KE   + ++A     Y +   G  +  D N    +  + L + P      
Sbjct: 25  IRRRRECTSCKERFTTFESAELVVPYVIKNNGNRVPFDANKLRVSLSRALEKRPVSA--D 82

Query: 485 DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQ 592
           D+EKA+SK+    +  GE +V S  + +L M   KQ
Sbjct: 83  DLEKAISKIIIQLQSTGEREVPSKLVGSLAMDALKQ 118


>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein
           53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1
          Length = 699

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 341 EINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSKV 511
           E+ +  + T  +Q AI Q+  +   LD  DF+A   I    P+E  +A++++ ++K+
Sbjct: 12  ELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKI 68


>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein
           53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1
          Length = 699

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 341 EINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSKV 511
           E+ +  + T  +Q AI Q+  +   LD  DF+A   I    P+E  +A++++ ++K+
Sbjct: 12  ELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKI 68


>sp|Q2ND71|GATB_ERYLH Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Erythrobacter litoralis
           (strain HTCC2594) GN=gatB PE=3 SV=1
          Length = 498

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           IK  G+    +  TA  QAAI ++  AG+   G        +L E      IAD EK L 
Sbjct: 377 IKSLGDEAHVENATAERQAAILKMQDAGEISGGQAKEIFEIVLKEGGDPATIAD-EKGLK 435

Query: 506 KVSSS 520
           +VS +
Sbjct: 436 QVSDT 440


>sp|O55189|AMBN_MOUSE Ameloblastin OS=Mus musculus GN=Ambn PE=2 SV=1
          Length = 407

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 569 GLPKMMKTPWLR-LVPQHLNSPWTKPSPHQRSNPH*DFHQ 453
           G  K + + WL  L+P H + PW  P  H+   P    HQ
Sbjct: 71  GFGKALNSLWLHGLLPPHNSFPWIGPREHETQQPSLQPHQ 110
tr_hit_id A9NQL0
Definition tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 94
Score (bit) 88.6
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944769|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C07, 5'
         (614 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea...    89   3e-16
tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genom...    83   1e-14
tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subs...    83   1e-14
tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza...    83   1e-14
tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza...    80   7e-14
tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella paten...    80   9e-14
tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    80   1e-13
tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea m...    80   1e-13
tr|B6TLE6|B6TLE6_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    62   3e-08
tr|B7FKG3|B7FKG3_MEDTR Putative uncharacterized protein OS=Medic...    42   0.022
tr|A8HY43|A8HY43_CHLRE Thylakoid lumenal protein OS=Chlamydomona...    40   0.11 
tr|A4SAK5|A4SAK5_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.24 
tr|A6DIN5|A6DIN5_9BACT Transcription termination factor Rho OS=L...    36   2.0  
tr|A5DD85|A5DD85_PICGU Putative uncharacterized protein OS=Pichi...    35   3.5  
tr|Q6MIA9|Q6MIA9_BDEBA Chemotaxis protein OS=Bdellovibrio bacter...    34   7.7  
tr|B2JUI3|B2JUI3_BURP8 Prophage tail length tape measure OS=Burk...    34   7.7  

>tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 229

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 44/94 (46%), Positives = 69/94 (73%)
 Frame = +2

Query: 332 RRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSKV 511
           ++ +IN+ K E A +Q A+Y+LS+ GQA++ NDF+ A  +LG+S    WI DV++A  KV
Sbjct: 111 QQDKINTLKNEAAYVQEAVYKLSEVGQAIEKNDFTRAIGVLGKSLDTKWIVDVKEAFLKV 170

Query: 512 SSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           SS  E++ +A+ F++SL +L  AVSK+++DLSKS
Sbjct: 171 SSDPEQKSKAETFTASLDSLISAVSKKNLDLSKS 204


>tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016931001
           PE=4 SV=1
          Length = 234

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 42/95 (44%), Positives = 61/95 (64%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           I+++G I+S  +ET  LQ  +Y+LSK GQA+D ND SAA   LG +    W+     A +
Sbjct: 114 IEKQGVISSSNKETGYLQELVYKLSKVGQAIDNNDLSAASSFLGSNTDADWVQKANIAFT 173

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSK 610
           K+SSS EE+ E   F+SSLA+L  +V + D++ SK
Sbjct: 174 KLSSSPEEKSEVDAFNSSLASLISSVVRNDMESSK 208


>tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.9 PE=2 SV=1
          Length = 239

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 43/96 (44%), Positives = 62/96 (64%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           ++++G I+S   ET  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A +
Sbjct: 119 LQKQGVISSSGTETGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVAFT 178

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           K SSS EE+     F+SSLA+L  +V+K D+D SKS
Sbjct: 179 KFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKS 214


>tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24389 PE=4 SV=1
          Length = 239

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 43/96 (44%), Positives = 62/96 (64%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           ++++G I+S   ET  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A +
Sbjct: 119 LQKQGVISSSGTETGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVAFT 178

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           K SSS EE+     F+SSLA+L  +V+K D+D SKS
Sbjct: 179 KFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKS 214


>tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021696 PE=4 SV=1
          Length = 241

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
 Frame = +2

Query: 326 IKRRGEINSFKEETAS--LQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKA 499
           ++++G I+S   ETA+  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A
Sbjct: 119 LQKQGVISSSGTETATGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVA 178

Query: 500 LSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
            +K SSS EE+     F+SSLA+L  +V+K D+D SKS
Sbjct: 179 FTKFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKS 216


>tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233194 PE=4 SV=1
          Length = 262

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +2

Query: 329 KRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSK 508
           KR   IN F +E+  +Q A+Y+LS+AGQA+DG DFS A  +L +  S+ WI D++ AL K
Sbjct: 101 KRSTAINDFVKESGFVQTAVYKLSEAGQAIDGGDFSKATAVLAQQNSD-WIRDIQAALKK 159

Query: 509 VSSSAEEQGEAKVFSSSLANLQMA 580
           VSSS++E   A  F SSL +LQ A
Sbjct: 160 VSSSSDEVAVADTFRSSLTSLQAA 183


>tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 246

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 43/96 (44%), Positives = 61/96 (63%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 126 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 185

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           K+SSS E++     F+SSLA L  +VSK D + SKS
Sbjct: 186 KLSSSPEQRNVVDSFNSSLATLFTSVSKLDPESSKS 221


>tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 43/96 (44%), Positives = 61/96 (63%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 125 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 184

Query: 506 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 613
           K+SSS E++     F+SSLA L  +VSK D + SKS
Sbjct: 185 KLSSSPEQRNVVDSFNSSLATLFTSVSKLDPESSKS 220


>tr|B6TLE6|B6TLE6_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 211

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 505
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 126 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 185

Query: 506 KVSSSAEEQ 532
           K+SSS E++
Sbjct: 186 KLSSSPEQR 194


>tr|B7FKG3|B7FKG3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 151

 Score = 42.4 bits (98), Expect = 0.022
 Identities = 18/45 (40%), Positives = 33/45 (73%)
 Frame = +2

Query: 326 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGE 460
           ++++G I+S  +ET  LQ  +Y+LS+ GQA++ ND ++A  +LG+
Sbjct: 103 LEKQGVISSSTKETGYLQDLVYKLSEVGQAIEQNDLTSAGSVLGK 147