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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944771
Clone id YMU02A01NGRL0007_C09
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_C09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGCATTCTAATATGGTATTTATCTCTTGTATGTTGGCGACCTGGTTTAAAGGGTATTACC
GAGGCTCATGAAGGAATTTTTATGTATTTGGCAGAGTTTGGGCAGGCAATTTACTTCATG
ATCTATATTACATTGTTGTGGGAAATTTCAAGTGGGTTCGAGATTTTGGTGAAGGTAGTT
GATTGTGTGACGACGGTAGTTATTGCCGAAATCTGCAACTCTTTGTCGCAAGGTGATTGG
TCATTTATGTGCTAAGGAAAGATGCTGGGGCTTTGCTTTTAAGCAACTCCTTCAAAATTT
TGTTTTGAATTTATATACATCCAATGGTTTGGATCNNAAAANAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAANANANANNAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5PZ43
Definition sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1 OS=Danio rerio
Align length 53
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C09, 5'
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protei...    29   6.4  
sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta' O...    29   8.4  

>sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1
            OS=Danio rerio GN=xirp1 PE=1 SV=1
          Length = 2297

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 286  LLKSKAPASFLST*MTNHLATKSCRFR-Q*LPSSHNQLPSPKSRTHLKFPTTM 131
            +L  ++   +  + +TN   TK C+     +PSSH QL S  S T  + PT++
Sbjct: 1586 MLYKQSGQPYTQSKITNDSGTKDCKQSFDHIPSSHTQLSSSVSVTRSEHPTSL 1638


>sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta'
           OS=Carsonella ruddii (strain PV) GN=rpoC PE=3 SV=1
          Length = 1292

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 210 FGNNYRRHTINYLHQNLEPT*NFPQQCNIDHEVNCLPKLCQIHKNSFMSL 61
           FG     + IN+ +   EP   F  +   D E+ CL K C  H + F++L
Sbjct: 24  FGEVTHSNFINFKNLKPEPNGLFCLKIFSDFELCCLKKKCFCHNDKFLNL 73
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C09, 5'
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******