DK944771
Clone id YMU02A01NGRL0007_C09
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_C09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TGCATTCTAATATGGTATTTATCTCTTGTATGTTGGCGACCTGGTTTAAAGGGTATTACC
GAGGCTCATGAAGGAATTTTTATGTATTTGGCAGAGTTTGGGCAGGCAATTTACTTCATG
ATCTATATTACATTGTTGTGGGAAATTTCAAGTGGGTTCGAGATTTTGGTGAAGGTAGTT
GATTGTGTGACGACGGTAGTTATTGCCGAAATCTGCAACTCTTTGTCGCAAGGTGATTGG
TCATTTATGTGCTAAGGAAAGATGCTGGGGCTTTGCTTTTAAGCAACTCCTTCAAAATTT
TGTTTTGAATTTATATACATCCAATGGTTTGGATCNNAAAANAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAANANANANNAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5PZ43
Definition sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1 OS=Danio rerio
Align length 53
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C09, 5'
(337 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protei... 29 6.4
sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta' O... 29 8.4

>sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protein 1
OS=Danio rerio GN=xirp1 PE=1 SV=1
Length = 2297

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1

Query: 286 LLKSKAPASFLST*MTNHLATKSCRFR-Q*LPSSHNQLPSPKSRTHLKFPTTM 131
+L ++ + + +TN TK C+ +PSSH QL S S T + PT++
Sbjct: 1586 MLYKQSGQPYTQSKITNDSGTKDCKQSFDHIPSSHTQLSSSVSVTRSEHPTSL 1638


>sp|Q05FH9|RPOC_CARRP DNA-directed RNA polymerase subunit beta'
OS=Carsonella ruddii (strain PV) GN=rpoC PE=3 SV=1
Length = 1292

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2

Query: 210 FGNNYRRHTINYLHQNLEPT*NFPQQCNIDHEVNCLPKLCQIHKNSFMSL 61
FG + IN+ + EP F + D E+ CL K C H + F++L
Sbjct: 24 FGEVTHSNFINFKNLKPEPNGLFCLKIFSDFELCCLKKKCFCHNDKFLNL 73


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944771|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C09, 5'
(337 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******