DK944778
Clone id YMU02A01NGRL0007_C19
Library
Length 315
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_C19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CGCCCCGAATTCACTACGCAAATGCATCCATGGCCCGGAATGACCCCCACAGTCGATCCT
ATGCCCGTGGCCAGAGAGTGCGGAGGCCATGCCCATGTGAATTATAGCTGAGGGGCAGAA
GGTGGAGGTTTTGGCGTTCGCTTTCGCCGCCACTGCTGCTTGTCGGCTTTGCCGCATTGA
GATGACGCTGTTTCCGTCTCTTAAACCTCCGACTCTAGAGCATCAAACCCAGTGGACCGC
ACCCTCCTGCGAAGAAGCCTTGCTGGCGCAAGAAGAAGCAGAGCTCANAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9BXT2
Definition sp|Q9BXT2|CCG6_HUMAN Voltage-dependent calcium channel gamma-6 subunit OS=Homo sapiens
Align length 42
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944778|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C19, 5'
(288 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9BXT2|CCG6_HUMAN Voltage-dependent calcium channel gamma-6 s... 32 1.3
sp|Q10216|YAY8_SCHPO Uncharacterized oxidoreductase C4H3.08 OS=S... 30 4.8
sp|Q5XJV6|LMTK3_MOUSE Serine/threonine-protein kinase LMTK3 OS=M... 29 6.3
sp|Q96Q04|LMTK3_HUMAN Serine/threonine-protein kinase LMTK3 OS=H... 29 8.3

>sp|Q9BXT2|CCG6_HUMAN Voltage-dependent calcium channel gamma-6
subunit OS=Homo sapiens GN=CACNG6 PE=2 SV=1
Length = 260

Score = 31.6 bits (70), Expect = 1.3
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = -2

Query: 137 TPKPPPSAPQL*FTWAWPPHSLATGIGSTVGVIPGHGCICVV 12
+P+PPP AP+L + ++W SL G+G+ + ++ G GC ++
Sbjct: 204 SPEPPP-APRLTYEYSW---SLGCGVGAGLILLLGAGCFLLL 241


>sp|Q10216|YAY8_SCHPO Uncharacterized oxidoreductase C4H3.08
OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1
Length = 286

Score = 29.6 bits (65), Expect = 4.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1

Query: 4 PEFTTQMHPWPGMTPTVDPMP-VARECGGHAHV 99
P +TQ WPG +DP P + R C G HV
Sbjct: 3 PVPSTQTQKWPGKHADLDPEPSLLRYCDGRVHV 35


>sp|Q5XJV6|LMTK3_MOUSE Serine/threonine-protein kinase LMTK3 OS=Mus
musculus GN=Lmtk3 PE=1 SV=1
Length = 1424

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2

Query: 149 RRKRTPKPPPSAPQL*FTWAWPPHSLATGIGSTVGVIP 36
R R P PPP F W WPP A G+ P
Sbjct: 415 RPPRPPPPPPPPRDGPFPWPWPPSHSAPRPGTLSSQFP 452


>sp|Q96Q04|LMTK3_HUMAN Serine/threonine-protein kinase LMTK3 OS=Homo
sapiens GN=LMTK3 PE=2 SV=2
Length = 1460

Score = 28.9 bits (63), Expect = 8.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2

Query: 149 RRKRTPKPPPSAPQL*FTWAWPPHSLATGIGSTVGVIP 36
R R P PPP F W WPP A G+ P
Sbjct: 415 RPPRPPPPPPPPRDGPFPWPWPPAHSAPRPGTLSSPFP 452


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944778|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_C19, 5'
(288 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******