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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944788
Clone id YMU02A01NGRL0007_D07
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_D07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGGAGTGATTTTGATAG
TTGAGGGATCGTATCTTGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCATAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCATAGAATAGATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATCTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGCTGAGATATATTTCCCTAAGGGTTTTTTCCTGAGAAAAAAAAAAAA
TATCGAATG
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 34.3
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944788|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D07, 5'
         (455 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    34   0.26 
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   4.9  
sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridi...    30   6.4  
sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  
sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  
sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +1

Query: 247 LISTSGEINKEKNLWVDV*DS*LIVTKPHRI--------DLGKKVGINKSGFVKIIE 393
           L+ T+ +++KE+N+W+++ D   +    +RI        D+  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 211 SIIVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPHRIDLGKKVGINKSGFV 381
           +IIVL+ +  + LI+   +I  EKNLW+ + +    +TK  +I    K  IN  G +
Sbjct: 622 NIIVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237) GN=tgt PE=3
           SV=1
          Length = 374

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S IR  LI     S   LG++ T H CF TP
Sbjct: 2   SAIRYELIKKCKQSGARLGRVYTPHGCFDTP 32


>sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae serotype 2 (strain D39 /
           NCTC 7466) GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 45
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944788|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D07, 5'
         (455 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    33   7.1  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = -1

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAKIRSLNYQ 54
           LK +++E+D ST +     ++++F A  +F+L VNL K R++  Q
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQ 278