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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944790
Clone id YMU02A01NGRL0007_D09
Library
Length 180
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_D09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATCTC
CCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGACA
AAATGATGAATAGAATACATTGCTCAAGATAGCTTTACTAGACAATTCGTTTGGCGTGTG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944790|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D09, 5'
         (157 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q53N99
Definition tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp. japonica
Align length 25
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944790|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D09, 5'
         (157 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    33   7.1  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 SFCPILSPPCLSFQYIIPSCLWEIP 52
           S CP L P CLS QY+ P+C   +P
Sbjct: 356 SICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 SFCPILSPPCLSFQYIIPSCLWEIP 52
           S CP L P CLS QY+ P+C   +P
Sbjct: 431 SICPGLPPTCLSDQYLSPNCTCAVP 455


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 SFCPILSPPCLSFQYIIPSCLWEIP 52
           S CP L P CLS QY+ P+C   +P
Sbjct: 356 SICPGLPPTCLSDQYLSPNCTCAVP 380