DK944791
Clone id YMU02A01NGRL0007_D10
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_D10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGAT
GGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCATCCCAAGTAGCATGGGG
CACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTG
ACCGATAGCGAAGCAGTACCGTGAGGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944791|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D10, 5'
(208 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 4.9
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 4.9
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1 29 8.3
sp|Q6BBL6|CLD4_BOVIN Claudin-4 OS=Bos taurus GN=CLDN4 PE=2 SV=1 29 8.3

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1

Query: 49 CTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPP 156
C P G AG T +S + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAG-TGASAAATTTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1

Query: 49 CTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPP 156
C P G AG T +S + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAG-TGASAAATTTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
Length = 4998

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2

Query: 195 CFAIGHSGIFSLTRWSSLIHTGFCVPHATWDGA*ASCTSGYWTI 64
C + G G+ LT WS G C+P + A + G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|Q6BBL6|CLD4_BOVIN Claudin-4 OS=Bos taurus GN=CLDN4 PE=2 SV=1
Length = 209

Score = 28.9 bits (63), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1

Query: 1 GESDEGFVLLGEAVEC--CTPDGDSPVAGSTASSRSIPSS 114
G + G ++LG A+ C C P D P + +++RS P+S
Sbjct: 167 GWAAAGLLILGGALLCFNCPPRNDKPYSAKYSAARSAPAS 206


tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 87.4
E-value 3.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944791|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D10, 5'
(208 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 87 3e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 87 3e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 87 3e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 87 3e-16
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 73 6e-12
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 59 2e-07
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 53 4e-07
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 55 2e-06
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 54 3e-06
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 53 7e-06
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 52 1e-05
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 52 2e-05
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 50 4e-05
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 49 2e-04
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 48 3e-04
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 47 4e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 47 6e-04
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 43 0.007
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 43 0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 43 0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 43 0.009
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 42 0.020
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 42 0.020
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 41 0.026
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O... 41 0.034
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche... 39 0.098

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 87.4 bits (215), Expect = 3e-16
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 201
+ECCT DG+SPVA S S RS PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 87.4 bits (215), Expect = 3e-16
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 201
+ECCT DG+SPVA S S RS PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 87.4 bits (215), Expect = 3e-16
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 201
+ECCT DG+SPVA S S RS PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 87.4 bits (215), Expect = 3e-16
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +1

Query: 40 VECCTPDGDSPVAGSTASSRSIPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 201
+ECCT DG+SPVA S S RS PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
(Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
Length = 52

Score = 73.2 bits (178), Expect = 6e-12
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +1

Query: 61 GDSPVAGSTASSRSIPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 201
G+SPV+ S S RS PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
Length = 44

Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -2

Query: 204 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 109
SRY FAIGH G+FSL RWS LIHTGF VPHAT
Sbjct: 9 SRYYFAIGHPGVFSLARWSLLIHTGFHVPHAT 40


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 53.1 bits (126), Expect(2) = 4e-07
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2

Query: 204 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 109
SRY FAI H +FSL RWS LIHTGF VPHAT
Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 23.9 bits (50), Expect(2) = 4e-07
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3

Query: 92 LAVLPATGLSPSGVQH 45
L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
Length = 101

Score = 54.7 bits (130), Expect = 2e-06
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -3

Query: 206 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGMERELAVLPATGLSPS 57
PHGT SLSV++EYLA +GGP F +DF CP LL + TGLSP+
Sbjct: 32 PHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
Length = 259

Score = 54.3 bits (129), Expect = 3e-06
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -3

Query: 206 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGMERELAVLPATGLSPS 57
PHGT+SLSVT+EYL L+ GP F +DF CP LL + TGLSP+
Sbjct: 108 PHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
Length = 171

Score = 53.1 bits (126), Expect = 7e-06
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = -3

Query: 206 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGMERELAVLPATGLSP 60
PHGT SLSV+QEYLAL+ GP F +D CP LL + A TGLSP
Sbjct: 24 PHGTGSLSVSQEYLALEDGPPIFRQDITCPALLDFTLDEA--SVTGLSP 70