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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944796
Clone id YMU02A01NGRL0007_D15
Library
Length 328
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_D15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTAGCCGGGGCGCGAGAAAATGGGTGACAAGAGCAACGGGCCTGTGTCCAATCCCTTGCC
GCCGCCTCCCAGGCCTCCTCGTAGCAGTAGCAACAACAATGGAAGCTCTGCGCGCGCAGA
GAACCTCTCCAATGCCGACTTTCGCCGTATGGTCACGGAAACACCCCGCAGAAGCGAGGA
AACACCCCATCACAAGGACCGCTCACGGAATCGTGGCAAGCGAGCAGATGATGATGATGA
TGCTGAGACTGATAGGCGAGGCCATAATCACAGTTCAAGAAAGCACCGCCCCAAGCCGAA
NAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O62685
Definition sp|O62685|MCP_SAISC Membrane cofactor protein (Fragment) OS=Saimiri sciureus
Align length 33
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944796|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D15, 5'
         (298 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O62685|MCP_SAISC Membrane cofactor protein (Fragment) OS=Saim...    34   0.20 
sp|Q8HYX8|MCP_CALJA Membrane cofactor protein OS=Callithrix jacc...    34   0.26 
sp|Q1XI86|IMPG2_CHICK Interphotoreceptor matrix proteoglycan 2 O...    32   1.3  
sp|Q8XVK1|Y2829_RALSO UPF0289 protein RSc2829 OS=Ralstonia solan...    31   2.2  
sp|O62837|MCP_SAGOE Membrane cofactor protein OS=Saguinus oedipu...    30   3.8  
sp|O19124|MCP_SAGMY Membrane cofactor protein (Fragment) OS=Sagu...    30   3.8  
sp|A3MR78|Y5747_BURM7 UPF0289 protein BMA10247_3247 OS=Burkholde...    29   6.5  
sp|A2S5S9|Y3615_BURM9 UPF0289 protein BMA10229_A1315 OS=Burkhold...    29   6.5  
sp|A3NZK0|Y3535_BURP0 UPF0289 protein BURPS1106A_3535 OS=Burkhol...    29   6.5  
sp|Q3JNF2|Y3531_BURP1 UPF0289 protein BURPS1710b_3531 OS=Burkhol...    29   6.5  
sp|A3NDU9|Y3510_BURP6 UPF0289 protein BURPS668_3510 OS=Burkholde...    29   6.5  
sp|Q63QL1|Y3012_BURPS UPF0289 protein BPSL3012 OS=Burkholderia p...    29   6.5  
sp|Q62GU2|Y2535_BURMA UPF0289 protein BMA2535 OS=Burkholderia ma...    29   6.5  
sp|A1V0Q3|Y2257_BURMS UPF0289 protein BMASAVP1_A0457 OS=Burkhold...    29   6.5  
sp|P36419|SYD_THETH Aspartyl-tRNA synthetase OS=Thermus thermoph...    29   6.5  
sp|Q5SKD2|SYD_THET8 Aspartyl-tRNA synthetase OS=Thermus thermoph...    29   6.5  
sp|Q72KH6|SYD_THET2 Aspartyl-tRNA synthetase OS=Thermus thermoph...    29   6.5  
sp|A1WUV1|AMPA_HALHL Probable cytosol aminopeptidase OS=Halorhod...    29   8.4  

>sp|O62685|MCP_SAISC Membrane cofactor protein (Fragment) OS=Saimiri
           sciureus GN=CD46 PE=1 SV=2
          Length = 285

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  CPIPCRRLPGLLVAVATTMEALRAQRTSPMPTF 143
           CP P RR PGL +A    + + R+    P PTF
Sbjct: 9   CPFPSRRFPGLFLAALALLLSSRSDACGPPPTF 41


>sp|Q8HYX8|MCP_CALJA Membrane cofactor protein OS=Callithrix jacchus
           GN=CD46 PE=1 SV=2
          Length = 392

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  CPIPCRRLPGLLVAVATTMEALRAQRTSPMPTF 143
           CP P RR PGLL+A    + +  +    P PTF
Sbjct: 9   CPFPSRRFPGLLLAALVLLRSSCSDACGPPPTF 41


>sp|Q1XI86|IMPG2_CHICK Interphotoreceptor matrix proteoglycan 2
           OS=Gallus gallus GN=IMPG2 PE=1 SV=1
          Length = 1423

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 90  ATTMEALRAQRTSPMPTFAVWSRKHPAEARKHPITRTAHGIVASEQMMMMMLR 248
           A   E  +A+  SP P   VW    P+     P  R  HGIV +EQ+   +LR
Sbjct: 24  AVAAEEKQAKDASPTPQLGVWQFASPS---LPPELRKLHGIVEAEQVNRHLLR 73


>sp|Q8XVK1|Y2829_RALSO UPF0289 protein RSc2829 OS=Ralstonia
           solanacearum GN=RSc2829 PE=3 SV=1
          Length = 252

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = +3

Query: 72  GLLVAVATTMEALRAQRTSP-------MPTFAVWSRKHPAEARKHPITRTAHGIVASEQM 230
           G L+A    + ++R++   P       +P +  W   HP E R+  I + A  +V     
Sbjct: 107 GQLIADNEWLTSIRSRAIIPGGTCEFDLPAYFAWQH-HPGERRRADIVKWAQPLVPLRDA 165

Query: 231 MMMMLRLIGEA 263
            M++LRL+ E+
Sbjct: 166 TMIVLRLLRES 176


>sp|O62837|MCP_SAGOE Membrane cofactor protein OS=Saguinus oedipus
           GN=CD46 PE=1 SV=2
          Length = 370

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  CPIPCRRLPGLLVAVATTMEALRAQRTSPMPTF 143
           CP P  R PGLL+A    + +  +    P PTF
Sbjct: 9   CPSPSWRFPGLLLAALVLLRSSCSDACGPPPTF 41


>sp|O19124|MCP_SAGMY Membrane cofactor protein (Fragment)
           OS=Saguinus mystax GN=CD46 PE=2 SV=2
          Length = 285

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  CPIPCRRLPGLLVAVATTMEALRAQRTSPMPTF 143
           CP P  R PGLL+A    + +  +    P PTF
Sbjct: 9   CPSPSWRFPGLLLAALVLLRSSCSDACGPPPTF 41


>sp|A3MR78|Y5747_BURM7 UPF0289 protein BMA10247_3247 OS=Burkholderia
           mallei (strain NCTC 10247) GN=BMA10247_3247 PE=3 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 132 MPTFAVWSRKHPAEARKHPITRTAHGIVASEQMMMMMLRLIGEA 263
           +P++  W ++ PAE R+H I + A  ++      M++LRL  E+
Sbjct: 134 LPSYYAW-QQWPAEQRRHDIAKWAMPLLPLRDAAMIVLRLARES 176


>sp|A2S5S9|Y3615_BURM9 UPF0289 protein BMA10229_A1315
           OS=Burkholderia mallei (strain NCTC 10229)
           GN=BMA10229_A1315 PE=3 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 132 MPTFAVWSRKHPAEARKHPITRTAHGIVASEQMMMMMLRLIGEA 263
           +P++  W ++ PAE R+H I + A  ++      M++LRL  E+
Sbjct: 134 LPSYYAW-QQWPAEQRRHDIAKWAMPLLPLRDAAMIVLRLARES 176


>sp|A3NZK0|Y3535_BURP0 UPF0289 protein BURPS1106A_3535
           OS=Burkholderia pseudomallei (strain 1106a)
           GN=BURPS1106A_3535 PE=3 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 132 MPTFAVWSRKHPAEARKHPITRTAHGIVASEQMMMMMLRLIGEA 263
           +P++  W ++ PAE R+H I + A  ++      M++LRL  E+
Sbjct: 134 LPSYYAW-QQWPAEQRRHDIAKWAMPLLPLRDAAMIVLRLARES 176


>sp|Q3JNF2|Y3531_BURP1 UPF0289 protein BURPS1710b_3531
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_3531 PE=3 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 132 MPTFAVWSRKHPAEARKHPITRTAHGIVASEQMMMMMLRLIGEA 263
           +P++  W ++ PAE R+H I + A  ++      M++LRL  E+
Sbjct: 134 LPSYYAW-QQWPAEQRRHDIAKWAMPLLPLRDAAMIVLRLARES 176
tr_hit_id A9NXF6
Definition tr|A9NXF6|A9NXF6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 59
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944796|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_D15, 5'
         (298 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NXF6|A9NXF6_PICSI Putative uncharacterized protein OS=Picea...    43   0.007
tr|B3GY65|B3GY65_ACTP7 Putative uncharacterized protein OS=Actin...    34   4.1  
tr|B0BQC0|B0BQC0_ACTPJ Putative uncharacterized protein OS=Actin...    34   4.1  
tr|A3N1H9|A3N1H9_ACTP2 Putative uncharacterized protein OS=Actin...    34   4.1  
tr|Q98JG7|Q98JG7_RHILO Norsolorinic acid reductase OS=Rhizobium ...    33   7.0  
tr|B5GK23|B5GK23_9ACTO DeoR-family transcriptional regulator OS=...    33   7.0  
tr|A4QVH8|A4QVH8_MAGGR Predicted protein OS=Magnaporthe grisea G...    33   7.0  

>tr|A9NXF6|A9NXF6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 660

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 24/59 (40%), Positives = 30/59 (50%)
 Frame = +2

Query: 122 NLSNADFRRMVTETPRRSEETPHHKDRSXXXXXXXXXXXXXXXXXXGHNHSSRKHRPKP 298
           NLSNADFRRMV ETPRR EE    + R                   G   ++R+++PKP
Sbjct: 43  NLSNADFRRMVMETPRRVEENSKERPRG-------RTKRADEEDGEGERSANRRNKPKP 94


>tr|B3GY65|B3GY65_ACTP7 Putative uncharacterized protein
           OS=Actinobacillus pleuropneumoniae serotype 7 (strain
           AP76) GN=APP7_1236 PE=4 SV=1
          Length = 322

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +3

Query: 27  TRATGLCPIPCRRLPGLLVAVATTMEALRAQRTSPMPT 140
           T+AT     P    P   VAVA  ME  +A+ TSPMPT
Sbjct: 156 TQATAPITAPVVETPSAPVAVAPVMETPKAETTSPMPT 193


>tr|B0BQC0|B0BQC0_ACTPJ Putative uncharacterized protein
           OS=Actinobacillus pleuropneumoniae serotype 3 (strain
           JL03) GN=APJL_1199 PE=4 SV=1
          Length = 322

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +3

Query: 27  TRATGLCPIPCRRLPGLLVAVATTMEALRAQRTSPMPT 140
           T+AT     P    P   VAVA  ME  +A+ TSPMPT
Sbjct: 156 TQATAPITAPVVETPSAPVAVAPVMETPKAETTSPMPT 193


>tr|A3N1H9|A3N1H9_ACTP2 Putative uncharacterized protein
           OS=Actinobacillus pleuropneumoniae serotype 5b (strain
           L20) GN=APL_1177 PE=4 SV=1
          Length = 322

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +3

Query: 27  TRATGLCPIPCRRLPGLLVAVATTMEALRAQRTSPMPT 140
           T+AT     P    P   VAVA  ME  +A+ TSPMPT
Sbjct: 156 TQATAPITAPVVETPSAPVAVAPVMETPKAETTSPMPT 193


>tr|Q98JG7|Q98JG7_RHILO Norsolorinic acid reductase OS=Rhizobium
           loti GN=mll1952 PE=4 SV=1
          Length = 348

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 187 GCFLASAGCFRDHTAKVGIGEVLCARRASIVVATATRRPGRRRQGI 50
           G F+ +AG ++   A+  +GE L  RR   VVAT    P   R GI
Sbjct: 49  GNFIDTAGVYQGGQAEEFLGEALAGRREDFVVATKYSMPAGSRGGI 94


>tr|B5GK23|B5GK23_9ACTO DeoR-family transcriptional regulator
           OS=Streptomyces sp. SPB74 GN=SSBG_04632 PE=4 SV=1
          Length = 194

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 202 AVLVMGCFLASAGCFRDHTAKVGIGEVLCARRASIVVATATRRPGRR 62
           AVL +G F A  G      A+ G+  +LCAR   +VVA  + + G R
Sbjct: 110 AVLGVGAFDAVEGAATADEAEAGVNRLLCARARRVVVAADSSKLGAR 156


>tr|A4QVH8|A4QVH8_MAGGR Predicted protein OS=Magnaporthe grisea
           GN=MGG_04509 PE=4 SV=1
          Length = 375

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 24  VTRATGLCPIPCRRLPGLLVAVATTMEALRAQRTSPMPTFAVWSRKH----PAEARKHPI 191
           VTRATGL P P       L+ V+  ++  R     P PTF  W  +H     A  R H  
Sbjct: 264 VTRATGLSPPP-------LLRVSPPVDDFR----RPQPTFTSWGAEHIESAAANHRNHSP 312

Query: 192 TRTAH 206
            R AH
Sbjct: 313 WRAAH 317