DK944809 |
Clone id |
YMU02A01NGRL0007_E05 |
Library |
YMU02 |
Length |
561 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_E05. 5' end sequence. |
Accession |
DK944809 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL6Contig1 |
Sequence |
TCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTATCCGCC CGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTTGGGA CCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGA AAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATC TATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTG GCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAAC ACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGA CACACTATGCGTCTTCCATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGAGAAT GAAAAAGTGTAGCTCCTTGTGAATTGCAATTTAGTTATTTGCATGTAAGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
137.0 |
E-value |
3.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944809|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0007_E05, 5' (530 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 137 3e-32 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 136 7e-32 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 135 2e-31 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 133 6e-31 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 132 8e-31 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 129 1e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 127 4e-29 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 31 3.2 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 31 3.2 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 7.2 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 9.4 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 9.4 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 9.4
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 137 bits (345), Expect = 3e-32 Identities = 70/121 (57%), Positives = 82/121 (67%) Frame = +1
Query: 16 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 195 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 196 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 375 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 376 Q 378 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 136 bits (342), Expect = 7e-32 Identities = 70/119 (58%), Positives = 81/119 (68%) Frame = +1
Query: 22 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 201 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 202 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 378 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 135 bits (339), Expect = 2e-31 Identities = 68/119 (57%), Positives = 82/119 (68%) Frame = +1
Query: 22 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 201 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 202 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 378 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 133 bits (334), Expect = 6e-31 Identities = 69/121 (57%), Positives = 80/121 (66%) Frame = +1
Query: 16 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 195 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 196 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 375 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 376 Q 378 Q Sbjct: 141 Q 141
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 132 bits (333), Expect = 8e-31 Identities = 69/119 (57%), Positives = 79/119 (66%) Frame = +1
Query: 22 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 201 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 202 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 378 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 129 bits (323), Expect = 1e-29 Identities = 68/118 (57%), Positives = 77/118 (65%) Frame = +1
Query: 25 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 204 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 205 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 378 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 127 bits (318), Expect = 4e-29 Identities = 71/125 (56%), Positives = 76/125 (60%), Gaps = 11/125 (8%) Frame = +1
Query: 34 PSLSPKL----------SAR-SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 180 PS SP L SAR SL I A KK+ T P GP G FK +DASGR AKG Sbjct: 13 PSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKG 72
Query: 181 KGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYN 360 KGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY+ Sbjct: 73 KGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYS 132
Query: 361 TSALA 375 TSALA Sbjct: 133 TSALA 137
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 31.2 bits (69), Expect = 3.2 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2
Query: 502 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 413 SQG+ L+HS D I N+ D +DA VR+ Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 31.2 bits (69), Expect = 3.2 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1
Query: 16 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 177 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 178 GKGVYQYTKKYGANVDGYSPIYVPEEW 258 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.0 bits (66), Expect = 7.2 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = +1
Query: 1 SEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 180 S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K KG Sbjct: 37 SQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSKFKG 93
Query: 181 KGVYQY 198 K V Y Sbjct: 94 KPVVVY 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
124 |
Score (bit) |
143.0 |
E-value |
6.0e-33 |
Report |
|