DK944812 |
Clone id |
YMU02A01NGRL0007_E09 |
Library |
YMU02 |
Length |
623 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_E09. 5' end sequence. |
Accession |
DK944812 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL845Contig1 |
Sequence |
ATATCTATCAAAGCAGGAACTCAGGAAGAGCTGTGTGCAATACAGGCGACAATGTCCGAT GAAGGAGAAGTTGTAGATCCCAGAGCTCACCTAGATGAGCTGTCGAAGCCAAAATGTGTC AAGCAGCTGATGAGCTATAAAGCTTGCGTCAAACGGATTGAAGGTGACACAACTGGACAC AAACACTGTACTGGCCAATATTTTGATTATTGGGCTTGTATCGATAAGAATGTTGCACCA AGGCTCTTCAGCTGGACCAAGTGAACAACCATTGTTCTGTAGGGAATGGACCTGATAGAC TGCATCTCATGTTGAATAAGGCTTCCCATATTGGGGGACTGTGGAGGAAGAACGTTTCTG TGATCAACCAGATCATTCCAAACATTGATTATAAAAGAAAAAATCATAATGGATTTTGGA TGTTTGATGAGAGCTCTTCTGCAAGGGATCGACTCTTCTACTGCTTTGTAGTTAAATAGG AAAAACATATCAAAGCAAGTTTATGACTGCTTGCCGTCTGGACGTACTGGTTTTTGCCAT GTTTGTTTCAAAATAACCATTTGAAGCTCAAGGGAGGCTTTTTTAGACCCGAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48504 |
Definition |
sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum |
Align length |
70 |
Score (bit) |
104.0 |
E-value |
4.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944812|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0007_E09, 5' (591 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanu... 104 4e-22 sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondr... 40 0.011 sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 ... 39 0.026 sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochon... 38 0.044 sp|A2QSC9|ATG2_ASPNC Autophagy-related protein 2 OS=Aspergillus ... 36 0.16 sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochon... 35 0.22 sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochon... 35 0.37 sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochon... 34 0.63 sp|P36911|EBA1_FLAME Endo-beta-N-acetylglucosaminidase F1 OS=Fla... 33 1.4 sp|Q03220|CTL1_YEAST Polynucleotide 5'-triphosphatase OS=Sacchar... 31 4.1 sp|Q60287|Y3528_METJA Uncharacterized protein MJECL28 OS=Methano... 31 5.3 sp|Q96MI9|CBPC4_HUMAN Cytosolic carboxypeptidase 4 OS=Homo sapie... 30 6.9 sp|Q9CWL2|CASZ1_MOUSE Zinc finger protein castor homolog 1 OS=Mu... 30 7.0 sp|Q86V15|CASZ1_HUMAN Zinc finger protein castor homolog 1 OS=Ho... 30 7.0
>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2 Length = 69
Score = 104 bits (259), Expect = 4e-22 Identities = 48/70 (68%), Positives = 55/70 (78%) Frame = +1
Query: 52 MSDEGEVVDPRAHLDELSKPKCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACIDKN 231 MSDE EVVDP+A L+ KPKCV+QL Y+AC KR+EGD +GHKHCTGQYFDYW CIDK Sbjct: 1 MSDE-EVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKC 59
Query: 232 VAPRLFSWTK 261 VA +LF K Sbjct: 60 VAAKLFDHLK 69
>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus norvegicus GN=Uqcrh PE=2 SV=1 Length = 89
Score = 39.7 bits (91), Expect = 0.011 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Frame = +1
Query: 58 DEGEVVDP----RAHLDELSKPKCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACID 225 +E E+VDP R H ++L K CVK ++C +R+ + + CT + FD+ D Sbjct: 20 EEEELVDPLTTVREHCEQLEK--CVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARD 77
Query: 226 KNVAPRLFSWTK 261 VA +LF K Sbjct: 78 HCVAHKLFKSLK 89
>sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=DDB_G0271774 PE=3 SV=1 Length = 69
Score = 38.5 bits (88), Expect = 0.026 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +1
Query: 115 CVKQLMSYKAC---VKRIEGDTTGHKHCTGQYFDYWACIDKNVAPRLFSWTK 261 C K +Y+AC V ++E D + C GQ+ ++ CIDK V P+LF+ K Sbjct: 20 CEKSWSAYQACSGRVAKLEHDEKAN--CLGQFLEHVQCIDKCVGPKLFAQLK 69
>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus GN=Uqcrh PE=1 SV=2 Length = 89
Score = 37.7 bits (86), Expect = 0.044 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +1
Query: 58 DEGEVVDP----RAHLDELSKPKCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACID 225 +E E+VDP R H ++L K CVK + C R+ + + CT + FD+ D Sbjct: 20 EEEELVDPLTTVREHCEQLEK--CVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARD 77
Query: 226 KNVAPRLF 249 VA +LF Sbjct: 78 HCVAHKLF 85
>sp|A2QSC9|ATG2_ASPNC Autophagy-related protein 2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg2 PE=3 SV=1 Length = 2221
Score = 35.8 bits (81), Expect = 0.16 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = -2
Query: 464 AVEESIPCRRALIKHPKSIMIFSFIINV-WNDLVDHRNVLPPQSPNMGSLIQHEMQSIRS 288 A+ + + L S+MI + NV + D V R+ PP S + S I H ++ + Sbjct: 1353 AIHDPVSSDATLELRKASLMIIDDVANVGYADNVQRRSSAPPHSNQVQSFIDHGFVTVCT 1412
Query: 287 IPYRTMVVHLVQLKSLGATFLSIQ 216 I T V +++L GA L ++ Sbjct: 1413 ISSATATVKIMRLSDDGAKSLDVE 1436
>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens GN=UQCRH PE=1 SV=2 Length = 91
Score = 35.4 bits (80), Expect = 0.22 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = +1
Query: 58 DEGEVVDPRAHLDELSKP--KCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACIDKN 231 +E E+VDP + E + KCVK + C +R+ + + CT + FD+ D Sbjct: 22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHC 81
Query: 232 VAPRLFS 252 VA +LF+ Sbjct: 82 VAHKLFN 88
>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca fascicularis GN=UQCRH PE=3 SV=1 Length = 91
Score = 34.7 bits (78), Expect = 0.37 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Frame = +1
Query: 58 DEGEVVDPRAHLDELSKP--KCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACIDKN 231 +E E+VDP + E + KCVK + C KR+ + + CT + D+ D Sbjct: 22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHC 81
Query: 232 VAPRLFS 252 VA +LF+ Sbjct: 82 VAYKLFN 88
>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus GN=UQCRH PE=1 SV=2 Length = 91
Score = 33.9 bits (76), Expect = 0.63 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +1
Query: 58 DEGEVVDPRAHLDELSKP--KCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACIDKN 231 +E E+VDP + E + KCVK + C +R+ + + CT + D+ D Sbjct: 22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHC 81
Query: 232 VAPRLFSWTK 261 VA +LF+ K Sbjct: 82 VAHKLFNSLK 91
>sp|P36911|EBA1_FLAME Endo-beta-N-acetylglucosaminidase F1 OS=Flavobacterium meningosepticum GN=endOF1 PE=1 SV=1 Length = 339
Score = 32.7 bits (73), Expect = 1.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3
Query: 246 LQLDQVNNHCSVGNGPDRLHLMLNKASHIGGLWRKNVSVINQIIPNID 389 + D N+ V N P+ HL+ N+A ++ L K + VI I+ N D Sbjct: 99 INYDAANDKVFVSNNPNVQHLLTNRAKYLKPLQDKGIKVILSILGNHD 146
>sp|Q03220|CTL1_YEAST Polynucleotide 5'-triphosphatase OS=Saccharomyces cerevisiae GN=CTL1 PE=1 SV=1 Length = 320
Score = 31.2 bits (69), Expect = 4.1 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1
Query: 88 HLDELSKPKCVKQLMSYKACVKRIEGDTTGHKHCTGQYFDYWACIDKN 231 H+ E +KP + + YK G T HKH + Y ACIDK+ Sbjct: 35 HISETTKPLTSTRAL-YKTTRNNSRGATEFHKHVCKLAWKYLACIDKS 81
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0WWE3 |
Definition |
tr|Q0WWE3|Q0WWE3_ARATH Ubiquinol-cytochrome-c reductase like protein (At1g15120) OS=Arabidopsis thaliana |
Align length |
70 |
Score (bit) |
108.0 |
E-value |
2.0e-22 |
Report |
|