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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944817
Clone id YMU02A01NGRL0007_E15
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_E15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCATCAACAACAACAACAACGTCGTGCTCACTCACCTCCACTCTCCACTCCGCACCACT
GCGGCACCCTAATCGTACGGTTCTGCCCACTTGGTGCCATGTGGCCACGGCACAACCCTC
TCTCTCTCTCTCTCTCTGAGGGCTGTGCCGAGCTGCATGCACCCAGTGGCCCAACACTAA
GGGTCGATGCGCTCTTCTTCGTCATCCAGAAGATGGGTCTGTACGTGCATGGCGATATCA
CCCATGCTCTGAGCTCAACCTAACGAACCAGGCCACTTACCTCGTACGTCTAACAAGACT
GATGAACTTAGAACTATCTAACACTGGGTCATTAAGACCCCAAGGCGGTGAAATCAGCGA
TTGTGGACGGGCTGCAGAGATCTTGAGGAGAATGGACGGAGGAAAAAACATCAACGCATT
GATCCACAACCCCCCACGTCTACGACTCGAACCCAAGACCTCCTTGTTGGCATCCCAACG
CCCTAATCACACGCCCGCGTGGGTTTGCTTGTCCCCAAGGTGAAGCCATTGTCTCATAAA
GTGAACTTGGACAGGGCCAAAAGTAAACACGGACCAAAAAAGTAAACA
■■Homology search results ■■ -
sp_hit_id Q06146
Definition sp|Q06146|YL257_YEAST Uncharacterized protein YLR257W OS=Saccharomyces cerevisiae
Align length 105
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944817|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_E15, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06146|YL257_YEAST Uncharacterized protein YLR257W OS=Sacchar...    33   1.1  
sp|P0AAJ4|FDNH_SHIFL Formate dehydrogenase, nitrate-inducible, i...    31   5.2  
sp|P0AAJ3|FDNH_ECOLI Formate dehydrogenase, nitrate-inducible, i...    31   5.2  
sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN...    30   8.9  
sp|A0LWH7|RECR_ACIC1 Recombination protein recR OS=Acidothermus ...    30   8.9  
sp|P16629|MATRX_SV5 Matrix protein OS=Simian virus 5 (strain W3)...    30   9.0  

>sp|Q06146|YL257_YEAST Uncharacterized protein YLR257W
           OS=Saccharomyces cerevisiae GN=YLR257W PE=1 SV=1
          Length = 321

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 28/105 (26%), Positives = 44/105 (41%)
 Frame = +2

Query: 170 PNTKGRCALLRHPEDGSVRAWRYHPCSELNLTNQATYLVRLTRLMNLELSNTGSLRPQGG 349
           P T    AL +  +D  +R   Y   +ELN   +   L     L N++ S   S R    
Sbjct: 45  PQTSSNHALSKMQKDDDIRDRSYTSVAELN--REGALLTDEVDLENVDASKVRSNR-DDL 101

Query: 350 EISDCGRAAEILRRMDGGKNINALIHNPPRLRLEPKTSLLASQRP 484
           E  +  +   +L++    K+IN+   + P LR     SL+ S  P
Sbjct: 102 EAEEKRKKLLLLKKKQRNKSINSESFSSPSLRASKSNSLITSTDP 146


>sp|P0AAJ4|FDNH_SHIFL Formate dehydrogenase, nitrate-inducible,
           iron-sulfur subunit OS=Shigella flexneri GN=fdnH PE=2
           SV=1
          Length = 294

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 146 CRAACTQWPNTK---GRCA-LLRHPEDGSVRAWRYHPCSELNLTNQATYLVRLTRLMNLE 313
           C+ AC++W + +   G C  +  +P D S ++W     SE     +  +L+R    M+ E
Sbjct: 45  CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCE 104

Query: 314 LSNTGSLRPQGGEI 355
                   P  G I
Sbjct: 105 DPGCLKACPSAGAI 118


>sp|P0AAJ3|FDNH_ECOLI Formate dehydrogenase, nitrate-inducible,
           iron-sulfur subunit OS=Escherichia coli (strain K12)
           GN=fdnH PE=1 SV=1
          Length = 294

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 146 CRAACTQWPNTK---GRCA-LLRHPEDGSVRAWRYHPCSELNLTNQATYLVRLTRLMNLE 313
           C+ AC++W + +   G C  +  +P D S ++W     SE     +  +L+R    M+ E
Sbjct: 45  CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCE 104

Query: 314 LSNTGSLRPQGGEI 355
                   P  G I
Sbjct: 105 DPGCLKACPSAGAI 118


>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus
           GN=Rnf150 PE=2 SV=2
          Length = 437

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
 Frame = +2

Query: 245 CSELNLTNQATYLVRLTRLMNLELSNTGSLRPQGG------EISDCGRAAEILRRMDGGK 406
           C +  +  +  +      +  LE     ++   GG      E S+CGR  E   + D   
Sbjct: 28  CLDFTVAEKEEWYTAFVNITYLEPEPGAAVAGSGGGAELHTEKSECGRYGEHSPKQDARG 87

Query: 407 NINALIHNPPRLRLEPKTSLLASQRPNHTPAWVCLSPR 520
            +        RL  +P T   A   P H   W+ L P+
Sbjct: 88  EVVMASSAQDRLACDPNTKFAA---PAHGKHWIALIPK 122


>sp|A0LWH7|RECR_ACIC1 Recombination protein recR OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=recR PE=3
           SV=1
          Length = 199

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 194 LLRHPEDGSVRAWRYHPCSELNLTNQATYLVRLTRLMNLELSNTGSLRPQGGEIS----- 358
           LL+   DG+V+         L     ATYL RL + + + ++   S  P GG++      
Sbjct: 126 LLQRLADGTVKELILATDPNLEGEATATYLARLVKPLGVRVTRLASGLPVGGDLEYADEV 185

Query: 359 DCGRAAEILRRMD 397
             GRA E  R++D
Sbjct: 186 TLGRALEGRRQLD 198


>sp|P16629|MATRX_SV5 Matrix protein OS=Simian virus 5 (strain W3)
           GN=M PE=3 SV=1
          Length = 377

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 147 HSPQREREREGCAVATWHQVGRTVRLGCRSGAEWR 43
           H+P  ++E  GC V+ W  V    + G ++G+EW+
Sbjct: 221 HTP--DKEGRGCLVSVWLHVCNIFKSGNKNGSEWQ 253
tr_hit_id Q74CU0
Definition tr|Q74CU0|Q74CU0_GEOSL PolyA polymerase family protein OS=Geobacter sulfurreducens
Align length 36
Score (bit) 34.3
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944817|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_E15, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q74CU0|Q74CU0_GEOSL PolyA polymerase family protein OS=Geobac...    34   5.3  
tr|Q7REE9|Q7REE9_PLAYO Putative uncharacterized protein PY05116 ...    34   5.3  
tr|Q7PM75|Q7PM75_ANOGA Protein Wnt (Fragment) OS=Anopheles gambi...    29   5.7  
tr|B7JWE5|B7JWE5_SYNP8 ATPase, P-type (Transporting), HAD superf...    33   9.2  
tr|B4BWN3|B4BWN3_9CHRO ATPase, P-type (Transporting), HAD superf...    33   9.2  

>tr|Q74CU0|Q74CU0_GEOSL PolyA polymerase family protein OS=Geobacter
           sulfurreducens GN=GSU1581 PE=3 SV=1
          Length = 880

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 320 NTGSLRPQGGEISDCGRAAEILRR--MDGGKNINAL 421
           ++G +RP GGEI DCG +  IL R  M+ G  + A+
Sbjct: 102 SSGDIRPSGGEIRDCGSSTTILTRKLMEQGIEVTAV 137


>tr|Q7REE9|Q7REE9_PLAYO Putative uncharacterized protein PY05116
           OS=Plasmodium yoelii yoelii GN=PY05116 PE=4 SV=1
          Length = 1373

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 281 LVRLTRLMNLELSNTGSLRPQGGEISDCGRAAEILRRMDGGKNINALIHN 430
           L+   R ++ +L  +   RP  G+++D G+A +  +  D GK  +++ HN
Sbjct: 520 LISRVRYISTQLQISSRSRPDSGKVTDSGKATDSGKATDSGKATDSITHN 569


>tr|Q7PM75|Q7PM75_ANOGA Protein Wnt (Fragment) OS=Anopheles gambiae
           GN=AGAP009735 PE=3 SV=4
          Length = 332

 Score = 29.3 bits (64), Expect(2) = 5.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 155 ACTQWPNTKGRCALLRHPEDGSVRAWRYHPCSE 253
           AC +   TK +CA  R PE  S+ AWR+  CS+
Sbjct: 120 ACAEGKMTKCQCASERKPEATSL-AWRWGGCSD 151



 Score = 23.1 bits (48), Expect(2) = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 364 WTGCRDLEENGRRKKHQRIDPQP----PTSTTRTQDLLVGI 474
           W GC D  ++G+R     ++ QP    P +     D  VGI
Sbjct: 146 WGGCSDNLKHGKRVARNFLELQPKAGDPVAEMLRHDSEVGI 186


>tr|B7JWE5|B7JWE5_SYNP8 ATPase, P-type (Transporting), HAD
            superfamily, subfamily IC OS=Synechococcus sp. (strain
            PCC 8801 / RF-1) GN=PCC8801_3003 PE=4 SV=1
          Length = 996

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 28/92 (30%), Positives = 41/92 (44%)
 Frame = -1

Query: 429  LWINALMFFPPSILLKISAARPQSLISPPWGLNDPVLDSSKFISLVRRTR*VAWFVRLSS 250
            LW+N +    P + L + A  P  L  PP   ++P++ SS F  +V  +   A  V   +
Sbjct: 834  LWLNLVTDIFPGLALALEAPEPDVLTLPPRSPDEPIIKSSDFRRIVWES--TALSVSSLA 891

Query: 249  EHG*YRHARTDPSSG*RRRAHRPLVLGHWVHA 154
             +G Y  AR   S      A   LV G  +HA
Sbjct: 892  AYG-YGIARYGISPHASTIAFMSLVSGQLLHA 922


>tr|B4BWN3|B4BWN3_9CHRO ATPase, P-type (Transporting), HAD
            superfamily, subfamily IC OS=Cyanothece sp. PCC 8802
            GN=Cyan8802DRAFT_0987 PE=4 SV=1
          Length = 996

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 28/92 (30%), Positives = 41/92 (44%)
 Frame = -1

Query: 429  LWINALMFFPPSILLKISAARPQSLISPPWGLNDPVLDSSKFISLVRRTR*VAWFVRLSS 250
            LW+N +    P + L + A  P  L  PP   ++P++ SS F  +V  +   A  V   +
Sbjct: 834  LWLNLVTDIFPGLALALEAPEPDVLTLPPRSPDEPIIKSSDFRRIVWES--TALSVSSLA 891

Query: 249  EHG*YRHARTDPSSG*RRRAHRPLVLGHWVHA 154
             +G Y  AR   S      A   LV G  +HA
Sbjct: 892  AYG-YGIARYGISPHASTIAFMSLVSGQLLHA 922