NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944826
Clone id YMU02A01NGRL0007_E24
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_E24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTGATGAAGACTTCAGGCAAGCGCTTCTTTATGAGCCAACGAACAAAACGGCCTCTGAT
GGAATCAGGAGATTGAAGAAACTGATTTTTGATTGAAGCAGCTGATTTTCACTGGTTATT
TGATAAATCTTTTGAATGCTGGTGCTTGGCTGTTTGATTTGGACTACTGATCAGTTTGTT
GATTTATGGTTTGTTATAATCCTTCGATTCATGAAATTGTACCAGAAGGTTAATATCCAT
TGTACTGAACAGCAAGAGCTTGGATGATTTAAAACGAAAATTGTTCGGATTGTTGTTGGT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8SL90
Definition sp|Q8SL90|RPOA_EUGMY DNA-directed RNA polymerase subunit alpha OS=Euglena myxocylindracea
Align length 36
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944826|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_E24, 5'
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SL90|RPOA_EUGMY DNA-directed RNA polymerase subunit alpha O...    31   1.7  
sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=...    29   6.4  
sp|Q7KWN2|C525A_DICDI Probable cytochrome P450 525A1 OS=Dictyost...    29   6.5  

>sp|Q8SL90|RPOA_EUGMY DNA-directed RNA polymerase subunit alpha
           OS=Euglena myxocylindracea GN=rpoA PE=3 SV=1
          Length = 207

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -2

Query: 288 PNNFRFKS--SKLLLFSTMDINL--LVQFHESKDYN 193
           PNNF+  S  + L+  +++DINL  L++ H+SK YN
Sbjct: 126 PNNFKILSIDNNLIKLNSLDINLKVLLELHKSKGYN 161


>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus
           musculus GN=Rpap3 PE=1 SV=1
          Length = 660

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKLIFD 93
           A +DF   LL EP NK A+  + R+KK + +
Sbjct: 371 AKQDFETVLLLEPGNKQAATELSRIKKELIE 401


>sp|Q7KWN2|C525A_DICDI Probable cytochrome P450 525A1
           OS=Dictyostelium discoideum GN=cyp525a1 PE=3 SV=1
          Length = 601

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -3

Query: 269 NHPSSCCSVQWILTFWYNFMNRRIITNHKSTN*SVVQIKQPSTSIQKIYQITSENQLLQ 93
           N P     ++W + + +NF + ++  N +  N +       S S +++ + TSEN +L+
Sbjct: 46  NLPKGPSFLKWFINYLFNFYDLKLSNNKEEDNNNNNNKSNNSLSQEELIEDTSENTVLK 104
tr_hit_id Q6RJN7
Definition tr|Q6RJN7|Q6RJN7_PHYPA Chloroplast Toc64-1 OS=Physcomitrella patens
Align length 30
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944826|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_E24, 5'
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6RJN7|Q6RJN7_PHYPA Chloroplast Toc64-1 OS=Physcomitrella pat...    52   2e-05
tr|Q6RJN6|Q6RJN6_PHYPA Chloroplast Toc64-2 OS=Physcomitrella pat...    44   0.005
tr|A9TS00|A9TS00_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A7PH66|A7PH66_VITVI Chromosome chr17 scaffold_16, whole genom...    36   1.1  
tr|B6UCR6|B6UCR6_MAIZE Toc64 OS=Zea mays PE=2 SV=1                     35   2.4  
tr|Q23TC3|Q23TC3_TETTH Putative uncharacterized protein OS=Tetra...    35   2.4  
tr|Q94GR7|Q94GR7_ORYSA Chloroplast protein-translocon-like prote...    34   3.1  
tr|Q10E52|Q10E52_ORYSJ Os03g0707900 protein OS=Oryza sativa subs...    34   3.1  
tr|B8AQB7|B8AQB7_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.1  
tr|A3ALX4|A3ALX4_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.1  
tr|Q9MUK5|Q9MUK5_PEA Toc64 OS=Pisum sativum GN=toc64 PE=1 SV=1         33   5.4  
tr|B8LQZ2|B8LQZ2_PICSI Putative uncharacterized protein OS=Picea...    33   7.0  
tr|Q22UP1|Q22UP1_TETTH ATPase, histidine kinase-, DNA gyrase B-,...    33   7.0  
tr|O15984|O15984_BOMMO Bm trachealess OS=Bombyx mori PE=2 SV=1         33   7.0  

>tr|Q6RJN7|Q6RJN7_PHYPA Chloroplast Toc64-1 OS=Physcomitrella patens
           PE=2 SV=1
          Length = 592

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 22/30 (73%), Positives = 28/30 (93%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKLIF 90
           ADEDFRQAL++EPTNKTAS+ + RLKKL++
Sbjct: 562 ADEDFRQALIFEPTNKTASEALSRLKKLLY 591


>tr|Q6RJN6|Q6RJN6_PHYPA Chloroplast Toc64-2 OS=Physcomitrella patens
           PE=2 SV=1
          Length = 585

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKLI 87
           A++DFRQA + EPTNKTAS+ + RLKKL+
Sbjct: 556 ANDDFRQAQILEPTNKTASEALARLKKLL 584


>tr|A9TS00|A9TS00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197643 PE=4 SV=1
          Length = 603

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +1

Query: 13  FRQALLYEPTNKTASDGIRRLKKLIFD 93
           FRQAL+YEP+NKTAS+ + RLKKL+++
Sbjct: 577 FRQALVYEPSNKTASEALSRLKKLLYN 603


>tr|A7PH66|A7PH66_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017826001
           PE=4 SV=1
          Length = 590

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/28 (67%), Positives = 20/28 (71%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A EDFR AL+ EPTNK AS    RLKKL
Sbjct: 561 AIEDFRYALVLEPTNKRASLSADRLKKL 588


>tr|B6UCR6|B6UCR6_MAIZE Toc64 OS=Zea mays PE=2 SV=1
          Length = 588

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A +DF  AL+ EP NKTA   I RLKKL
Sbjct: 559 AVDDFNHALVLEPMNKTAGVAINRLKKL 586


>tr|Q23TC3|Q23TC3_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00666590 PE=4
           SV=1
          Length = 585

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/87 (28%), Positives = 44/87 (50%)
 Frame = -2

Query: 297 NNNPNNFRFKSSKLLLFSTMDINLLVQFHESKDYNKP*INKLISSPNQTAKHQHSKDLSN 118
           NNN NN ++ + +    S  +I +  +   S +  +P     I S N+ A+H+ S   +N
Sbjct: 280 NNNNNNTQYSNKQQRNASLKEITIDEKRDSSLERRQP-----IRSLNKNAQHEFS--FNN 332

Query: 117 NQ*KSAASIKNQFLQSPDSIRGRFVRW 37
           N  K + +  N F++S D+   + VRW
Sbjct: 333 NLFKLSQNEPNTFIKSQDNKAQKNVRW 359


>tr|Q94GR7|Q94GR7_ORYSA Chloroplast protein-translocon-like protein
           OS=Oryza sativa GN=OSJNBb0022E02.6 PE=4 SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A +DF  AL+ EP NKTA   I RLKKL
Sbjct: 557 AVDDFSHALVLEPMNKTAGVAINRLKKL 584


>tr|Q10E52|Q10E52_ORYSJ Os03g0707900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0707900 PE=4 SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A +DF  AL+ EP NKTA   I RLKKL
Sbjct: 557 AVDDFSHALVLEPMNKTAGVAINRLKKL 584


>tr|B8AQB7|B8AQB7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13214 PE=4 SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A +DF  AL+ EP NKTA   I RLKKL
Sbjct: 557 AVDDFSHALVLEPMNKTAGVAINRLKKL 584


>tr|A3ALX4|A3ALX4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011796 PE=4 SV=1
          Length = 605

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   ADEDFRQALLYEPTNKTASDGIRRLKKL 84
           A +DF  AL+ EP NKTA   I RLKKL
Sbjct: 576 AVDDFSHALVLEPMNKTAGVAINRLKKL 603