NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944827
Clone id YMU02A01NGRL0007_F01
Library
Length 285
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_F01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCATCATAGCTTTCCGATCACCCATTATGCAAGGGCTCTTCATTGAACATGCTTCTTACC
TTGTGAAGTTTTCGACACCCAGTTGAAAAGCCCTTCATTTGTAGAGATTGGTGAGTTTTT
ACCTTTTTGTATGTAACGAAAGACAGGCCCTCCAAAATGGAGTCCCATGTGTTTCGAAAA
AATTGATGTAAAGGTTTTTGGTTTGTTTGAAAGAGCTGTTATTTGCTATATACAAGTTAC
AAATTCATGAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7Z7G0
Definition sp|Q7Z7G0|TARSH_HUMAN Target of Nesh-SH3 OS=Homo sapiens
Align length 45
Score (bit) 28.9
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944827|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F01, 5'
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7Z7G0|TARSH_HUMAN Target of Nesh-SH3 OS=Homo sapiens GN=ABI3...    29   8.2  
sp|Q8RSQ2|BAR_RHOER Barbiturase OS=Rhodococcus erythropolis GN=b...    29   8.2  

>sp|Q7Z7G0|TARSH_HUMAN Target of Nesh-SH3 OS=Homo sapiens GN=ABI3BP
           PE=2 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 222 ITALSNKPKTFTSIFSKHMGLHFGGPVFRYIQKGKNSPISTNEGL 88
           IT  S+ P   T    K     F GP  RYIQK  NSP S  + +
Sbjct: 779 ITDFSSSPTRETDPLGKP---RFKGPHVRYIQKPDNSPCSITDSV 820


>sp|Q8RSQ2|BAR_RHOER Barbiturase OS=Rhodococcus erythropolis GN=bar
           PE=1 SV=3
          Length = 369

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 255 DIH---EFVTCI*QITA-LSNKPKTFTSIFSKHMGLHFGGPVFRYIQKGK 118
           D+H   +  +C+  +TA ++  P  F S+ + H G   GGPV   +  G+
Sbjct: 320 DVHWHRQIKSCVGGVTAAVTGDPAVFVSVSAAHQGPEGGGPVAAIVDLGQ 369
tr_hit_id Q8YAM9
Definition tr|Q8YAM9|Q8YAM9_LISMO Lmo0089 protein OS=Listeria monocytogenes
Align length 34
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944827|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F01, 5'
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8YAM9|Q8YAM9_LISMO Lmo0089 protein OS=Listeria monocytogenes...    35   1.4  
tr|Q724W7|Q724W7_LISMF Putative ATP synthase F1, delta subunit O...    33   7.2  
tr|Q4EK24|Q4EK24_LISMO ATP synthase F1, delta subunit, putative ...    33   7.2  
tr|Q24F54|Q24F54_TETTH Guanylate-binding protein, N-terminal dom...    33   9.3  

>tr|Q8YAM9|Q8YAM9_LISMO Lmo0089 protein OS=Listeria monocytogenes
           GN=lmo0089 PE=4 SV=1
          Length = 343

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 232 YIANNSSFKQTKNLYINFFETHGTPFWRACLSLH 131
           Y+  + S++QT+NLY NF E +   F+R  + +H
Sbjct: 245 YMMTHYSYRQTRNLYRNFLEVYNIHFYRGLICIH 278


>tr|Q724W7|Q724W7_LISMF Putative ATP synthase F1, delta subunit
           OS=Listeria monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_0106 PE=4 SV=1
          Length = 343

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 232 YIANNSSFKQTKNLYINFFETHGTPFWRACLSLH 131
           Y+  + S++QT+NLY NF E +   F+   + +H
Sbjct: 245 YMMTHYSYRQTRNLYRNFLEVYNIHFYTGLICIH 278


>tr|Q4EK24|Q4EK24_LISMO ATP synthase F1, delta subunit, putative
           OS=Listeria monocytogenes str. 4b H7858 GN=LMOh7858_0113
           PE=4 SV=1
          Length = 340

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 232 YIANNSSFKQTKNLYINFFETHGTPFWRACLSLH 131
           Y+  + S++QT+NLY NF E +   F+   + +H
Sbjct: 242 YMMTHYSYRQTRNLYRNFLEVYNIHFYTGLICIH 275


>tr|Q24F54|Q24F54_TETTH Guanylate-binding protein, N-terminal domain
           containing protein (Fragment) OS=Tetrahymena thermophila
           SB210 GN=TTHERM_01129710 PE=4 SV=2
          Length = 760

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = -2

Query: 209 QTNQKPLHQFFRNTWDSILEGLSFVTYKK-VKTHQSLQMKGFST 81
           Q N+K      ++ WD+ILEG + V+Y+K ++ +Q +++K FS+
Sbjct: 467 QINEKDGVPDIKSAWDNILEGEAQVSYEKAIQAYQEMKIKLFSS 510