NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944829
Clone id YMU02A01NGRL0007_F05
Library
Length 375
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_F05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGGATGCAGTGAAGAAGATGTATGACATCCAAACCAAGAAGGTTAACACATTGATTAC
ACCAAAGGGGCAGAAAAAGGCTTATGTTAGGTTGACTGCTGATTATGATGCTTTGGATGT
TGCGAACAAAATTGGAATCATCTAAGTGATTATCAATCACCGGTAGTGGGGAATATGTAG
CTTAGGATTGGTTGAGATTTGAACCTCGAGCCTTCACTGACAGACAGTTTGTACGACTTT
GTTTTAAGCTGCTTCGGTTACCAATTTTGTCTCCGTGAAGCTGCCTGAGTATATGCCCAA
TGGAATTGGATTTTATAATTACAGTCAGTCTTTTTTGCAGGCTCCNAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q07761
Definition sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum
Align length 43
Score (bit) 79.3
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944829|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F05, 5'
         (346 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana ta...    79   5e-15
sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carot...    79   5e-15
sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsi...    79   5e-15
sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsi...    79   5e-15
sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria ...    76   6e-14
sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabd...    72   9e-13
sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegi...    69   7e-12
sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus...    69   7e-12
sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens...    69   7e-12
sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus G...    69   7e-12
sp|P04456|RL25_YEAST 60S ribosomal protein L25 OS=Saccharomyces ...    66   6e-11
sp|P08792|RL25_PICJA 60S ribosomal protein L25 OS=Pichia jadinii...    63   5e-10
sp|P41165|RL23A_TRYBB 60S ribosomal protein L23a OS=Trypanosoma ...    63   5e-10
sp|Q54BQ3|RL23A_DICDI 60S ribosomal protein L23a OS=Dictyosteliu...    63   5e-10
sp|P48045|RL25_KLULA 60S ribosomal protein L25 OS=Kluyveromyces ...    62   7e-10
sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2 OS=Caenorhabd...    62   9e-10
sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia grami...    62   1e-09
sp|O74391|RL25B_SCHPO 60S ribosomal protein L25-B OS=Schizosacch...    60   3e-09
sp|Q10330|RL25A_SCHPO 60S ribosomal protein L25-A OS=Schizosacch...    60   4e-09
sp|Q4JB42|RL23_SULAC 50S ribosomal protein L23P OS=Sulfolobus ac...    57   3e-08
sp|A6UV66|RL23_META3 50S ribosomal protein L23P OS=Methanococcus...    57   3e-08
sp|P54016|RL23_METJA 50S ribosomal protein L23P OS=Methanocaldoc...    56   6e-08
sp|Q8ZW50|RL23_PYRAE 50S ribosomal protein L23P OS=Pyrobaculum a...    55   1e-07
sp|Q8TY92|RL23_METKA 50S ribosomal protein L23P OS=Methanopyrus ...    54   2e-07
sp|Q9YFM0|RL23_AERPE 50S ribosomal protein L23P OS=Aeropyrum per...    54   2e-07
sp|O28356|RL23_ARCFU 50S ribosomal protein L23P OS=Archaeoglobus...    53   4e-07
sp|O74095|RL23_PYRHO 50S ribosomal protein L23P OS=Pyrococcus ho...    53   5e-07
sp|Q9V1T7|RL23_PYRAB 50S ribosomal protein L23P OS=Pyrococcus ab...    52   7e-07
sp|Q5JDH1|RL23_PYRKO 50S ribosomal protein L23P OS=Pyrococcus ko...    52   9e-07
sp|Q8U000|RL23_PYRFU 50S ribosomal protein L23P OS=Pyrococcus fu...    52   9e-07

>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana
           tabacum GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota
           GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis
           thaliana GN=RPL23AB PE=2 SV=1
          Length = 154

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis
           thaliana GN=RPL23AA PE=2 SV=2
          Length = 154

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria
           agrestis GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 37/43 (86%), Positives = 38/43 (88%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALD+ANK
Sbjct: 108 KAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANK 150


>sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1
           OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1
          Length = 147

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 35/43 (81%), Positives = 38/43 (88%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAV K+Y++Q  KVNTLITP  QKKAYVRLTADYDALDVANK
Sbjct: 101 KDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANK 143


>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus
           GN=Rpl23a PE=2 SV=1
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKK+YDI   KVNTLI P G+KKAYVRL  DYDALDVANK
Sbjct: 110 KQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152


>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus
           GN=Rpl23a PE=2 SV=1
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKK+YDI   KVNTLI P G+KKAYVRL  DYDALDVANK
Sbjct: 110 KQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152


>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens
           GN=RPL23A PE=1 SV=1
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKK+YDI   KVNTLI P G+KKAYVRL  DYDALDVANK
Sbjct: 110 KQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152


>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus
           GN=RPL23A PE=2 SV=1
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKK+YDI   KVNTLI P G+KKAYVRL  DYDALDVANK
Sbjct: 110 KQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152
tr_hit_id A5X2V2
Definition tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris vittata
Align length 43
Score (bit) 88.2
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944829|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F05, 5'
         (346 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pter...    88   2e-16
tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|Q2V603|Q2V603_BRACM Putative uncharacterized protein OS=Brass...    79   9e-14
tr|A9PAS4|A9PAS4_POPTR Putative uncharacterized protein OS=Popul...    79   9e-14
tr|A8MS83|A8MS83_ARATH Uncharacterized protein At3g55280.3 OS=Ar...    79   9e-14
tr|A5ARE4|A5ARE4_VITVI Putative uncharacterized protein OS=Vitis...    79   9e-14
tr|B8LPV7|B8LPV7_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A9S4N7|A9S4N7_PHYPA Predicted protein (Fragment) OS=Physcomit...    79   1e-13
tr|A9P0C6|A9P0C6_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A9NTI1|A9NTI1_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A9NPD2|A9NPD2_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|Q9LWB2|Q9LWB2_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    78   3e-13
tr|A7PJ11|A7PJ11_VITVI Chromosome chr13 scaffold_17, whole genom...    78   3e-13
tr|Q9LWB3|Q9LWB3_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    77   3e-13
tr|B7FGR0|B7FGR0_MEDTR Putative uncharacterized protein OS=Medic...    77   3e-13
tr|A8J239|A8J239_CHLRE Ribosomal protein L23a OS=Chlamydomonas r...    77   4e-13
tr|A9P8I1|A9P8I1_POPTR Putative uncharacterized protein OS=Popul...    76   7e-13
tr|Q3HRX7|Q3HRX7_SOLTU Ribosomal protein L25-like protein OS=Sol...    76   1e-12
tr|A9NRT2|A9NRT2_PICSI Putative uncharacterized protein OS=Picea...    76   1e-12
tr|B0DUL0|B0DUL0_LACBS Predicted protein OS=Laccaria bicolor (st...    74   3e-12
tr|Q94CM9|Q94CM9_ORYSJ Putative 60S ribosomal protein L23A (Puta...    74   4e-12
tr|Q7XT72|Q7XT72_ORYSA OSJNBa0029H02.21 protein OS=Oryza sativa ...    74   4e-12
tr|Q0JBZ7|Q0JBZ7_ORYSJ Os04g0501000 protein OS=Oryza sativa subs...    74   4e-12
tr|Q01I92|Q01I92_ORYSA H0311C03.2 protein OS=Oryza sativa GN=H03...    74   4e-12
tr|O81229|O81229_MAIZE Ribosomal protein L25 (Fragment) OS=Zea m...    74   4e-12
tr|B8ARB0|B8ARB0_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|B6UHJ9|B6UHJ9_MAIZE 60S ribosomal protein L23a OS=Zea mays PE...    74   4e-12
tr|B6UE09|B6UE09_MAIZE 60S ribosomal protein L23a OS=Zea mays PE...    74   4e-12

>tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris
           vittata PE=2 SV=1
          Length = 128

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK
Sbjct: 82  KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 124


>tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200781 PE=3 SV=1
          Length = 152

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K+AVKKMYDIQTKKVNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 106 KEAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVANK 148


>tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_190449 PE=3 SV=1
          Length = 155

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K+AVKKMYDIQTKKVNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 109 KEAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVANK 151


>tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208348 PE=3 SV=1
          Length = 156

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K+AVKKMYDIQTKKVNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 110 KEAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVANK 152


>tr|Q2V603|Q2V603_BRACM Putative uncharacterized protein OS=Brassica
           campestris PE=2 SV=1
          Length = 154

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>tr|A9PAS4|A9PAS4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 107 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 149


>tr|A8MS83|A8MS83_ARATH Uncharacterized protein At3g55280.3
           OS=Arabidopsis thaliana GN=At3g55280 PE=3 SV=1
          Length = 148

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 102 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 144


>tr|A5ARE4|A5ARE4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003139 PE=3 SV=1
          Length = 156

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 110 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 152


>tr|B8LPV7|B8LPV7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 154

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           KDAVKKMYDIQTKKVNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 108 KDAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANK 150


>tr|A9S4N7|A9S4N7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48360 PE=3 SV=1
          Length = 140

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 39/43 (90%), Positives = 39/43 (90%)
 Frame = +2

Query: 2   KDAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVANK 130
           K AVKKMYDIQTKKVNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 94  KQAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVANK 136