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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944830
Clone id YMU02A01NGRL0007_F06
Library
Length 215
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_F06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGGTTGTTGCCATTACAGATGACTTGAAGGCCAACAAAGCTTTTGCCAAGCTTCGACTG
GAAAGGATGAATAAGCGCTTGATGGGTGTGCGCAAAAAGAGAGCAGCAGAAGCTGAGAAA
GATGAGAAGAAGTAATAGCTGTAACAGGTCTTTTGTAGTACAATGAAATGAAAGTTTTTG
AAGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P41127
Definition sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana
Align length 29
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944830|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F06, 5'
         (186 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis...    35   0.12 
sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica na...    35   0.16 
sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas ...    34   0.20 
sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis...    34   0.20 
sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Ar...    32   0.77 
sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica na...    32   1.0  
sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicu...    32   1.3  

>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis
           thaliana GN=RPL13B PE=1 SV=1
          Length = 206

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           E+V +T ++K+ KAF K+RLER NKR  G
Sbjct: 163 ELVKLTSEMKSFKAFDKIRLERTNKRHAG 191


>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus
           PE=2 SV=1
          Length = 206

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           E+V +T ++K+ KAF K+RLER NKR  G
Sbjct: 163 ELVKLTTEMKSVKAFDKIRLERTNKRHAG 191


>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp.
           (strain W80) GN=RPL13 PE=2 SV=1
          Length = 208

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E+V IT D+K    + KLR+ER+N RL G+
Sbjct: 164 ELVKITADMKEGSQYGKLRIERVNARLKGM 193


>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis
           thaliana GN=RPL13D PE=2 SV=1
          Length = 206

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           E+V +T DLKA KA+ K+RLER N R  G
Sbjct: 163 ELVKLTADLKAFKAYDKIRLERTNARHAG 191


>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2
           OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1
          Length = 206

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E+V +T D+K   A+ K+RLE +NKR  GV
Sbjct: 163 ELVKLTSDMKLFNAYDKIRLEGINKRHAGV 192


>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus
           PE=2 SV=1
          Length = 206

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           E+V +T ++K+  A+ K+RLER NKR  G
Sbjct: 163 ELVKLTSEMKSVNAYDKIRLERTNKRHAG 191


>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus
           GN=Rpl13 PE=1 SV=2
          Length = 211

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 10  AITDDLKANKAFAKLRLERMNKRLMGV 90
           AIT++ K  KAFA LR+ R N RL G+
Sbjct: 168 AITEEEKNFKAFASLRMARANARLFGI 194
tr_hit_id A9NTR4
Definition tr|A9NTR4|A9NTR4_PICSI 60S ribosomal protein L13 OS=Picea sitchensis
Align length 30
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944830|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_F06, 5'
         (186 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NTR4|A9NTR4_PICSI 60S ribosomal protein L13 OS=Picea sitche...    45   0.002
tr|Q9AVT4|Q9AVT4_PICAB 60S ribosomal protein L13 OS=Picea abies ...    45   0.002
tr|A9S995|A9S995_PHYPA 60S ribosomal protein L13 OS=Physcomitrel...    45   0.002
tr|A9NXV5|A9NXV5_PICSI 60S ribosomal protein L13 OS=Picea sitche...    45   0.002
tr|Q9LWS2|Q9LWS2_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa...    44   0.004
tr|A2Y8K1|A2Y8K1_ORYSI 60S ribosomal protein L13 OS=Oryza sativa...    44   0.004
tr|Q8VX00|Q8VX00_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa...    42   0.012
tr|Q8S9G2|Q8S9G2_ORYSA 60S ribosomal protein L13 OS=Oryza sativa...    42   0.012
tr|Q7XJB4|Q7XJB4_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa...    42   0.012
tr|Q10HT7|Q10HT7_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa...    42   0.012
tr|B8LQY1|B8LQY1_PICSI Putative uncharacterized protein OS=Picea...    42   0.012
tr|A6N1J6|A6N1J6_ORYSI 60S ribosomal protein l13-2 (Fragment) OS...    42   0.012
tr|A2XIT5|A2XIT5_ORYSI 60S ribosomal protein L13 OS=Oryza sativa...    42   0.012
tr|A9RPU7|A9RPU7_PHYPA 60S ribosomal protein L13 OS=Physcomitrel...    42   0.015
tr|A9U376|A9U376_PHYPA 60S ribosomal protein L13 OS=Physcomitrel...    41   0.026
tr|A9SVU5|A9SVU5_PHYPA 60S ribosomal protein L13 OS=Physcomitrel...    41   0.026
tr|A9S4N9|A9S4N9_PHYPA 60S ribosomal protein L13 OS=Physcomitrel...    41   0.026
tr|A7QLM4|A7QLM4_VITVI 60S ribosomal protein L13 OS=Vitis vinife...    40   0.059
tr|A7PRE6|A7PRE6_VITVI 60S ribosomal protein L13 OS=Vitis vinife...    40   0.059
tr|A5CB91|A5CB91_VITVI 60S ribosomal protein L13 OS=Vitis vinife...    40   0.059
tr|A5AZF5|A5AZF5_VITVI 60S ribosomal protein L13 OS=Vitis vinife...    40   0.059
tr|B7FMY6|B7FMY6_MEDTR Putative uncharacterized protein OS=Medic...    40   0.077
tr|B7FGV8|B7FGV8_MEDTR Putative uncharacterized protein OS=Medic...    40   0.077
tr|B7FGS0|B7FGS0_MEDTR Putative uncharacterized protein OS=Medic...    40   0.077
tr|B6UIJ6|B6UIJ6_MAIZE 60S ribosomal protein L13-2 OS=Zea mays P...    39   0.10 
tr|B6T5F2|B6T5F2_MAIZE 60S ribosomal protein L13-2 OS=Zea mays P...    39   0.10 
tr|B4FYQ8|B4FYQ8_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.10 
tr|B3TM25|B3TM25_ELAGV 60S ribosomal protein L13E OS=Elaeis guin...    39   0.10 
tr|Q8S3J1|Q8S3J1_WHEAT 60S ribosomal protein L13 OS=Triticum aes...    38   0.22 
tr|B3TM24|B3TM24_ELAGV 60S ribosomal protein L13E OS=Elaeis guin...    37   0.50 

>tr|A9NTR4|A9NTR4_PICSI 60S ribosomal protein L13 OS=Picea
           sitchensis PE=2 SV=1
          Length = 209

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/30 (63%), Positives = 27/30 (90%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E++ +TD++K  KA+AKLR+ERMNKRL+GV
Sbjct: 166 EIIKVTDEMKNFKAYAKLRVERMNKRLVGV 195


>tr|Q9AVT4|Q9AVT4_PICAB 60S ribosomal protein L13 OS=Picea abies
           PE=2 SV=1
          Length = 207

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/30 (66%), Positives = 27/30 (90%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E+V +TD++K  KA+AKLR+ERMNKRL+GV
Sbjct: 164 ELVKVTDEMKNFKAYAKLRVERMNKRLVGV 193


>tr|A9S995|A9S995_PHYPA 60S ribosomal protein L13 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_182493 PE=3 SV=1
          Length = 207

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/30 (63%), Positives = 27/30 (90%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E+V+ITD++K+ K + KLRLERMN+RL+GV
Sbjct: 164 EIVSITDEMKSQKGYYKLRLERMNERLVGV 193


>tr|A9NXV5|A9NXV5_PICSI 60S ribosomal protein L13 OS=Picea
           sitchensis PE=2 SV=1
          Length = 207

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/30 (66%), Positives = 27/30 (90%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMGV 90
           E+V +TD++K  KA+AKLR+ERMNKRL+GV
Sbjct: 164 ELVKVTDEMKNFKAYAKLRVERMNKRLVGV 193


>tr|Q9LWS2|Q9LWS2_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa
           subsp. japonica GN=P0541H01.38 PE=2 SV=1
          Length = 208

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TDD+KA KA+AKLR+ERMN+R +G
Sbjct: 165 EVVKVTDDMKAFKAYAKLRVERMNQRHIG 193


>tr|A2Y8K1|A2Y8K1_ORYSI 60S ribosomal protein L13 OS=Oryza sativa
           subsp. indica GN=OsI_21382 PE=2 SV=1
          Length = 208

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TDD+KA KA+AKLR+ERMN+R +G
Sbjct: 165 EVVKVTDDMKAFKAYAKLRVERMNQRHIG 193


>tr|Q8VX00|Q8VX00_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa
           subsp. japonica GN=bbc1l PE=2 SV=1
          Length = 142

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TD++KA KA+AKLR+ERMN+R +G
Sbjct: 99  EVVKVTDEMKAFKAYAKLRVERMNQRHVG 127


>tr|Q8S9G2|Q8S9G2_ORYSA 60S ribosomal protein L13 OS=Oryza sativa
           GN=cip1 PE=2 SV=1
          Length = 208

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TD++KA KA+AKLR+ERMN+R +G
Sbjct: 165 EVVKVTDEMKAFKAYAKLRVERMNQRHVG 193


>tr|Q7XJB4|Q7XJB4_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa
           subsp. japonica GN=Os03g0576700 PE=2 SV=1
          Length = 208

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TD++KA KA+AKLR+ERMN+R +G
Sbjct: 165 EVVKVTDEMKAFKAYAKLRVERMNQRHVG 193


>tr|Q10HT7|Q10HT7_ORYSJ 60S ribosomal protein L13 OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g37970 PE=3 SV=1
          Length = 196

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   EVVAITDDLKANKAFAKLRLERMNKRLMG 87
           EVV +TD++KA KA+AKLR+ERMN+R +G
Sbjct: 153 EVVKVTDEMKAFKAYAKLRVERMNQRHVG 181