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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944847
Clone id YMU02A01NGRL0007_G02
Library
Length 321
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_G02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTCAACGCCACTGGTATATTCAGAGTACATGTGCCACATCAGGCGAAGGTCTTTACGAGG
GCTTGGATTGGCTCTCTGGTAACATTGCCAGCAAGGGTTAGGAGAAGGTTTCCTAGTAAA
CATGAACTTTTTTGAAGATCTTGCTTAGGGAATTTCATATGAGACTGATTGTTGAATTAT
CATGCGAGTAAGTTATGTATCTGGTCATGACATTGGTTGTGTTTGCCTTCTGGGGACAAA
CTCATGTTGAAATATCATGCTTGACAGCTTGTTATGATGTCAAATTGGTGTGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q06396
Definition sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica
Align length 31
Score (bit) 68.9
E-value 7.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944847|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G02, 5'
         (293 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa s...    69   7e-12
sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota ...    69   7e-12
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis th...    69   7e-12
sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa s...    68   2e-11
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN...    68   2e-11
sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus r...    68   2e-11
sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata...    67   2e-11
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 2 OS=Arabidopsis th...    67   2e-11
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas ...    67   3e-11
sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 ...    67   4e-11
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 OS=Solanum tubero...    62   9e-10
sp|P40945|ARF2_DROME ADP-ribosylation factor 2 OS=Drosophila mel...    57   2e-08
sp|Q75A26|ARF_ASHGO ADP-ribosylation factor OS=Ashbya gossypii G...    56   5e-08
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 OS=Rattus norvegicu...    56   5e-08
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2 OS=Mus musculus G...    56   5e-08
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2 OS=Bos taurus GN=...    56   5e-08
sp|O00909|ARF1_DICDI ADP-ribosylation factor 1 OS=Dictyostelium ...    56   6e-08
sp|P34728|ARF_CRYNE ADP-ribosylation factor OS=Cryptococcus neof...    55   1e-07
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 OS=Rattus norvegicu...    55   1e-07
sp|Q5R5P7|ARF3_PONAB ADP-ribosylation factor 3 OS=Pongo abelii G...    55   1e-07
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3 OS=Mus musculus G...    55   1e-07
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3 OS=Homo sapiens G...    55   1e-07
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3 OS=Fugu rubripes ...    55   1e-07
sp|Q5E9I6|ARF3_BOVIN ADP-ribosylation factor 3 OS=Bos taurus GN=...    55   1e-07
sp|P19146|ARF2_YEAST ADP-ribosylation factor 2 OS=Saccharomyces ...    55   1e-07
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 OS=Xenopus laevis...    54   2e-07
sp|P84079|ARF1_RAT ADP-ribosylation factor 1 OS=Rattus norvegicu...    54   2e-07
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1 OS=Mus musculus G...    54   2e-07
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 OS=Macaca fascicu...    54   2e-07
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1 OS=Homo sapiens G...    54   2e-07

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa
           subsp. japonica GN=Os01g0813400 PE=2 SV=3
          Length = 181

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota
           GN=ARF1 PE=2 SV=2
          Length = 181

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis
           thaliana GN=ARF1 PE=1 SV=2
          Length = 181

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa
           subsp. japonica GN=ARF PE=2 SV=2
          Length = 181

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIA+K
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180


>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko
           GN=ARF1 PE=2 SV=3
          Length = 181

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NI+SK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180


>sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus
           roseus GN=ARF1 PE=2 SV=3
          Length = 181

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIA+K
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180


>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata
           GN=ARF PE=2 SV=3
          Length = 181

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGL+WLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180


>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 2 OS=Arabidopsis
           thaliana GN=ARF2-A PE=2 SV=3
          Length = 181

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 29/31 (93%), Positives = 29/31 (93%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIA K
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180


>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas
           reinhardtii GN=ARF1 PE=2 SV=2
          Length = 181

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS N+A+K
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180


>sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1
           PE=2 SV=2
          Length = 181

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCAT+GEGLYEGLDWLS NIA+K
Sbjct: 150 QRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
tr_hit_id Q677H6
Definition tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment) OS=Hyacinthus orientalis
Align length 32
Score (bit) 71.2
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944847|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G02, 5'
         (293 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment) OS=Hya...    71   2e-11
tr|Q677C8|Q677C8_HYAOR ADP-ribosylation factor (Fragment) OS=Hya...    71   2e-11
tr|Q8W4Z3|Q8W4Z3_GOSHI ADP-ribosylation factor (ADP-ribosylation...    70   5e-11
tr|Q84TR7|Q84TR7_GOSHI ARF1-like GTP-binding protein OS=Gossypiu...    70   5e-11
tr|Q3HVL9|Q3HVL9_SOLTU ARF-like small GTPase-like protein OS=Sol...    70   5e-11
tr|Q9ZPJ2|Q9ZPJ2_SOYBN ADP-ribosylation factor (Fragment) OS=Gly...    69   1e-10
tr|Q84TK7|Q84TK7_POPTM ADP-ribosylation factor 1 OS=Populus trem...    69   1e-10
tr|Q6S4R7|Q6S4R7_MEDSA ADP-ribosylation factor OS=Medicago sativ...    69   1e-10
tr|Q6ID97|Q6ID97_ARATH At1g10630 (Similar to ADP-ribosylation fa...    69   1e-10
tr|Q5QQ33|Q5QQ33_MEDTR ADP-ribosylation factor 1 OS=Medicago tru...    69   1e-10
tr|Q38HU6|Q38HU6_SOLTU ADP-ribosylation factor 1-like protein OS...    69   1e-10
tr|Q0JIB5|Q0JIB5_ORYSJ cDNA clone:001-047-G02, full insert seque...    69   1e-10
tr|B8AB93|B8AB93_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|B7FIW2|B7FIW2_MEDTR Putative uncharacterized protein OS=Medic...    69   1e-10
tr|A9PDM2|A9PDM2_POPTR Putative uncharacterized protein OS=Popul...    69   1e-10
tr|A9P9X4|A9P9X4_POPTR Putative uncharacterized protein OS=Popul...    69   1e-10
tr|A2ZYX1|A2ZYX1_ORYSJ Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|Q9M7P4|Q9M7P4_CAPAN ADP-ribosylation factor OS=Capsicum annuu...    68   3e-10
tr|Q9M1P5|Q9M1P5_ARATH ADP-ribosylation factor-like protein OS=A...    68   3e-10
tr|Q9LYJ3|Q9LYJ3_ARATH ADP-ribosylation factor-like protein OS=A...    68   3e-10
tr|Q8RVI5|Q8RVI5_PINPS Putative ADP-ribosylation factor (Fragmen...    68   3e-10
tr|Q7XZG0|Q7XZG0_ORYSJ Os03g0811900 protein OS=Oryza sativa subs...    68   3e-10
tr|Q7F270|Q7F270_ORYSJ Os07g0223400 protein OS=Oryza sativa subs...    68   3e-10
tr|Q76ME3|Q76ME3_WHEAT ADP-ribosylation factor OS=Triticum aesti...    68   3e-10
tr|Q70XK1|Q70XK1_HORVD ADP-ribosylation factor 1-like protein OS...    68   3e-10
tr|Q6XK26|Q6XK26_POPTM ADP-ribosylation factor 2 OS=Populus trem...    68   3e-10
tr|Q6EFV6|Q6EFV6_BRAJU ARF-like small GTPase OS=Brassica juncea ...    68   3e-10
tr|Q5XUV1|Q5XUV1_WHEAT ADP-ribosylation factor OS=Triticum aesti...    68   3e-10
tr|Q38JU3|Q38JU3_DAUCA ADP ribosylation factor 002 OS=Daucus car...    68   3e-10
tr|Q2M5D1|Q2M5D1_BRAJU ARF-like small GTPase 1 (Fragment) OS=Bra...    68   3e-10

>tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment)
           OS=Hyacinthus orientalis GN=ARF PE=2 SV=1
          Length = 199

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASKG 98
           QRHWYIQSTCATSGEGLYEGLDWLS NIASKG
Sbjct: 168 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKG 199


>tr|Q677C8|Q677C8_HYAOR ADP-ribosylation factor (Fragment)
           OS=Hyacinthus orientalis GN=ARF PE=2 SV=1
          Length = 145

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASKG 98
           QRHWYIQSTCATSGEGLYEGLDWLS NIASKG
Sbjct: 114 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKG 145


>tr|Q8W4Z3|Q8W4Z3_GOSHI ADP-ribosylation factor (ADP-ribosylation
           factor 1) OS=Gossypium hirsutum GN=ARF1 PE=2 SV=1
          Length = 181

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASKG 98
           QRHWYIQSTCATSGEGLYEGLDWLS NIA+KG
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKG 181


>tr|Q84TR7|Q84TR7_GOSHI ARF1-like GTP-binding protein OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 181

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASKG 98
           QRHWYIQSTCATSGEGLYEGLDWLS NIA+KG
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKG 181


>tr|Q3HVL9|Q3HVL9_SOLTU ARF-like small GTPase-like protein
           OS=Solanum tuberosum PE=2 SV=1
          Length = 181

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASKG 98
           QRHWYIQSTCATSGEGLYEGLDWLS NIA+KG
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKG 181


>tr|Q9ZPJ2|Q9ZPJ2_SOYBN ADP-ribosylation factor (Fragment)
           OS=Glycine max PE=2 SV=1
          Length = 178

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 147 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 177


>tr|Q84TK7|Q84TK7_POPTM ADP-ribosylation factor 1 OS=Populus
           tremuloides PE=2 SV=1
          Length = 181

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>tr|Q6S4R7|Q6S4R7_MEDSA ADP-ribosylation factor OS=Medicago sativa
           GN=ARF1 PE=2 SV=1
          Length = 181

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>tr|Q6ID97|Q6ID97_ARATH At1g10630 (Similar to ADP-ribosylation
           factor gb|AAD17207) OS=Arabidopsis thaliana GN=At1g10630
           PE=2 SV=1
          Length = 181

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180


>tr|Q5QQ33|Q5QQ33_MEDTR ADP-ribosylation factor 1 OS=Medicago
           truncatula GN=arf1 PE=2 SV=1
          Length = 181

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = +3

Query: 3   QRHWYIQSTCATSGEGLYEGLDWLSGNIASK 95
           QRHWYIQSTCATSGEGLYEGLDWLS NIASK
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180