BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944848|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G03, 5'
         (241 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=S...    29   8.4  

>sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9
           OS=Saccharomyces cerevisiae GN=CTR9 PE=1 SV=2
          Length = 1077

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 238 AKTQEFPSIIRAHSDSDTAQHLHTLMMSFAFNNTRLKFVASLPPDLPLLIFT*KMTDLNV 59
           A+T E     ++ S       LH   ++    N  LKF  S   D  +     K+ DLN 
Sbjct: 547 ARTNEKNDCEKSESIYSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEMNKLLDLNK 606

Query: 58  LDVEIYTLY 32
            D+EI + Y
Sbjct: 607 SDLEIRSFY 615

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944848|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G03, 5'
         (241 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6EF35|A6EF35_9SPHI Peptide chain release factor OS=Pedobacte...    33   5.4  

>tr|A6EF35|A6EF35_9SPHI Peptide chain release factor OS=Pedobacter
           sp. BAL39 GN=PBAL39_06121 PE=4 SV=1
          Length = 136

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 66  KSVIFQVNIKSGRSGGREATNFNRVLLNAKLIINVCKC*AVSESECARIID 218
           + ++ +V  K+ RSGG+   N N+V    +LI+N+     +S+ E + +I+
Sbjct: 6   EEILREVTFKTSRSGGKGGQNVNKVSSKVELILNIPSASFLSDEERSLLIE 56