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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944854
Clone id YMU02A01NGRL0007_G09
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_G09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCGCCAACCCGCT
CTCCATCTCCAACGGCAGCCGCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGGAAGGGCTGGACCCCCTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCA
GGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 186.0
E-value 7.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944854|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G09, 5'
         (574 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   186   7e-47
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   183   5e-46
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   183   6e-46
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   182   8e-46
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   182   1e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   180   4e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   180   4e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   179   7e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   179   7e-45
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   179   7e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   179   7e-45
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   179   7e-45
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   179   9e-45
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   177   4e-44
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha...   176   6e-44

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  186 bits (472), Expect = 7e-47
 Identities = 88/156 (56%), Positives = 110/156 (70%), Gaps = 5/156 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSE 283
           L+  F+GLK+   F    K+ N  S   SNG RV  M VW P   KK+ETLSYLPPL+ E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
           +E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  183 bits (465), Expect = 5e-46
 Identities = 85/148 (57%), Positives = 103/148 (69%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVD 304
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPLT EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 484
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
            YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  183 bits (464), Expect = 6e-46
 Identities = 88/152 (57%), Positives = 111/152 (73%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 295
           F+ LK+T+ F    K+ N ++   SNG RV  M VW P   KKFETLSYLPPL+SEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
           EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  182 bits (463), Expect = 8e-46
 Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 4/151 (2%)
 Frame = +2

Query: 128 FSGLKATTLF-APKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 298
           F+GLK+   F   K AN  S   SNG RV  M VW P   KK+ETLSYLPPLT  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
           C KEYP+A+IR++GFD  RQVQ   F+  +P
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 295
           F+GL+++  F    K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 295
           F+GL+++  F    K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  182 bits (461), Expect = 1e-45
 Identities = 87/157 (55%), Positives = 113/157 (71%), Gaps = 4/157 (2%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 286
           L+  F+GLK++  F   K  N ++   SNGSRV+ M VW P   KKFETLSYLPPLT EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 574
           E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  182 bits (461), Expect = 1e-45
 Identities = 86/156 (55%), Positives = 109/156 (69%), Gaps = 8/156 (5%)
 Frame = +2

Query: 125 SFSGLKATTLFAP--KSANPLS------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTS 280
           +F+GLK+T  F    K +N  +       SNG RV  M VW P+ N KFETLSYLP LT 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 281 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
            E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  182 bits (461), Expect = 1e-45
 Identities = 85/152 (55%), Positives = 109/152 (71%), Gaps = 5/152 (3%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 295
           F+GLK++  F    K+ N ++   SNG RV+ M VW P   KKFETLSYLP LT  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
           EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small chain
           4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1
          Length = 178

 Score =  180 bits (457), Expect = 4e-45
 Identities = 86/151 (56%), Positives = 107/151 (70%), Gaps = 4/151 (2%)
 Frame = +2

Query: 128 FSGLKATTLF-APKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQ 298
           F+GLK+   F A K AN  S   SNG RV  M VW P   KK+ETLSYLP LT  Q+AK+
Sbjct: 25  FTGLKSNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKE 84

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++R  W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+ E
Sbjct: 85  VDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQE 144

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 568
           C KEYP+A+IR++GFD  RQVQ   F+  KP
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 291.0
E-value 2.0e-77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944854|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G09, 5'
         (574 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   291   2e-77
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   207   4e-52
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   204   4e-51
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   202   8e-51
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   200   4e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   200   5e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   200   5e-50
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   190   4e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   190   4e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   185   1e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   185   1e-45
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   183   5e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...   182   1e-44
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  291 bits (745), Expect = 2e-77
 Identities = 135/152 (88%), Positives = 146/152 (96%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 295
           LSKSFSGLKA TLFAPK ANPL+ISNGSR+SAMLVWKPYDNKKFETLSYLPPLT++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           CAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  207 bits (526), Expect = 4e-52
 Identities = 97/153 (63%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K FSGLK+TTLFA K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  204 bits (518), Expect = 4e-51
 Identities = 96/153 (62%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K FSGLK+TTL A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  202 bits (515), Expect = 8e-51
 Identities = 93/153 (60%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK+ TLF+ K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  200 bits (509), Expect = 4e-50
 Identities = 92/153 (60%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK  TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 5e-50
 Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK+ TLF  KS    S+ NGSRV  M VW P    KFET SYLPPL+ +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  200 bits (508), Expect = 5e-50
 Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK+ TLF+ ++    S+ NGSRV  M VW P    KFET SYLPPLT ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  191 bits (484), Expect = 3e-47
 Identities = 87/150 (58%), Positives = 109/150 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK+ T+F+ K+ N  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 4e-47
 Identities = 88/150 (58%), Positives = 109/150 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK++TLF+ K+ +  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 4e-47
 Identities = 88/150 (58%), Positives = 110/150 (73%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 301
           K+FSGLK+ TLF+ +S    S+ NGSRV+ M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 571
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181