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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944867
Clone id YMU02A01NGRL0007_G24
Library
Length 186
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_G24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGGGGCAAGGCAAGTCCTTCCAGTGTGAGCTTGTCTTTTCAAAGTTGGGAATCAACC
CAATCATGATGAGTGCCGGAGAGCTCGAGAGTGGCAATGCTGGTGAACCTGCCAAGCTTA
TCAGGCAAAGGTATCGTGAAGCTGCGGACATCATGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id P10871
Definition sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea
Align length 51
Score (bit) 100.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944867|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G24, 5'
         (156 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ...   100   2e-21
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ...   100   2e-21
sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase ...   100   2e-21
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase...   100   2e-21
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase...   100   2e-21
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ...   100   4e-21
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase...    99   5e-21
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ...    99   9e-21
sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ...    98   1e-20
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    98   1e-20
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    98   1e-20
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ...    97   2e-20
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ...    96   4e-20
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ...    96   7e-20
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase...    94   2e-19
sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ...    87   3e-17
sp|P58555|RCA_ANASP Ribulose bisphosphate carboxylase/oxygenase ...    70   3e-12
sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase ...    70   3e-12
sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase ...    51   2e-06
sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase ...    50   3e-06
sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing prote...    32   1.00 
sp|Q9HRW6|PSMR2_HALSA Proteasome-activating nucleotidase 2 OS=Ha...    30   3.8  
sp|Q9C5M3|LUP1_ARATH Lupeol synthase 1 OS=Arabidopsis thaliana G...    30   3.8  
sp|Q9HPF0|CDCH_HALSA Protein cdcH OS=Halobacterium salinarium GN...    29   6.5  

>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2
          Length = 472

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+KLGINPIMMSAGELESGNAGEPAKLIRQRYREAAD++
Sbjct: 165 KGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLI 215


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Oryza sativa subsp. japonica
           GN=RCA PE=1 SV=2
          Length = 466

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 158 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 208


>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Cucumis sativus PE=2 SV=1
          Length = 413

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 164 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 214


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
           PE=2 SV=1
          Length = 435

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 167 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 217


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
           PE=2 SV=1
          Length = 476

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 167 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 217


>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
           SV=2
          Length = 439

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 47/51 (92%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD++
Sbjct: 169 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLI 219


>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase
           activase A, chloroplastic OS=Hordeum vulgare GN=RCAA
           PE=2 SV=1
          Length = 464

 Score = 99.4 bits (246), Expect = 5e-21
 Identities = 47/51 (92%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD++
Sbjct: 157 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMI 207


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
           PE=2 SV=1
          Length = 441

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 46/51 (90%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREA+D++
Sbjct: 171 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLI 221


>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Solanum pennellii PE=2 SV=1
          Length = 459

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 47/51 (92%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF K+GINPIMMSAGELESGNAGEPAKLIRQRYREAA+I+
Sbjct: 166 KGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII 216


>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA
           PE=2 SV=1
          Length = 439

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 47/51 (92%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF K+GINPIMMSAGELESGNAGEPAKLIRQRYREAA+I+
Sbjct: 171 KGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII 221
tr_hit_id A7PIQ8
Definition tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 101.0
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944867|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_G24, 5'
         (156 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom...   101   2e-20
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ...   101   2e-20
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis...   101   2e-20
tr|Q9M4V3|Q9M4V3_WHEAT Ribulose bisphosphate carboxylase activas...   100   4e-20
tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...   100   4e-20
tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...   100   4e-20
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch...   100   4e-20
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch...   100   4e-20
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch...   100   4e-20
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch...   100   4e-20
tr|Q8L5T3|Q8L5T3_CHEQI Rubisco activase OS=Chenopodium quinoa GN...   100   4e-20
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...   100   4e-20
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy...   100   4e-20
tr|B8BIM0|B8BIM0_ORYSI Putative uncharacterized protein OS=Oryza...   100   4e-20
tr|B7EAB2|B7EAB2_ORYSJ cDNA clone:J013001C24, full insert sequen...   100   4e-20
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul...   100   4e-20
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul...   100   4e-20
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome...   100   4e-20
tr|Q7X9A2|Q7X9A2_DESAN Rubisco activase alpha form OS=Deschampsi...    99   8e-20
tr|Q7X9A1|Q7X9A1_DESAN Rubisco activase beta form OS=Deschampsia...    99   8e-20
tr|A1BQG8|A1BQG8_CUCSA Chloroplast rubisco activase (Fragment) O...    99   8e-20
tr|Q05C31|Q05C31_HUMAN Putative uncharacterized protein OS=Homo ...    99   8e-20
tr|A6H5A1|A6H5A1_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A6H5A0|A6H5A0_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A6H599|A6H599_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A6H598|A6H598_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A6H597|A6H597_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A6H596|A6H596_VIGUN Putative rubisco activase (Fragment) OS=V...    99   1e-19
tr|A9RES5|A9RES5_PHYPA Predicted protein OS=Physcomitrella paten...    99   1e-19
tr|A9PJF4|A9PJF4_POPJC Putative uncharacterized protein OS=Popul...    99   1e-19

>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001
           PE=4 SV=1
          Length = 438

 Score =  101 bits (252), Expect = 2e-20
 Identities = 49/51 (96%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVFSK+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 168 KGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218


>tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024270001
           PE=4 SV=1
          Length = 472

 Score =  101 bits (252), Expect = 2e-20
 Identities = 49/51 (96%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVFSK+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 167 KGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 217


>tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039112 PE=4 SV=1
          Length = 472

 Score =  101 bits (252), Expect = 2e-20
 Identities = 49/51 (96%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVFSK+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 167 KGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 217


>tr|Q9M4V3|Q9M4V3_WHEAT Ribulose bisphosphate carboxylase activase B
           OS=Triticum aestivum GN=RcaB PE=2 SV=1
          Length = 432

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 161 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 211


>tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase 1 OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 438

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 170 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 220


>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 435

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 128 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 178


>tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedeschia
           aethiopica GN=rca1 PE=2 SV=1
          Length = 436

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 129 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 179


>tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedeschia
           aethiopica GN=rca2 PE=2 SV=1
          Length = 334

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 64  KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 114


>tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedeschia
           aethiopica GN=rca3 PE=2 SV=1
          Length = 426

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 119 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 169


>tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedeschia
           aethiopica GN=rca4 PE=2 SV=1
          Length = 435

 Score =  100 bits (249), Expect = 4e-20
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   KGQGKSFQCELVFSKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADIM 155
           KGQGKSFQCELVF+K+GINPIMMSAGELESGNAGEPAKLIRQRYREAADI+
Sbjct: 165 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 215