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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944880
Clone id YMU02A01NGRL0007_H14
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_H14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGCCTATGAGCGTTGATAAAAT
CCCCGCATCGCAGGTGGAGTAGCGCGTCGAGGTGGCGGAGGATTCGACGACGAAGTTCAA
ACGACAAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGCAAAC
GACGAAATGCTTCGGGGAGCCGAAAATAGGTATAGATCCGGAGATTCCCGAATAGGTTAA
CCTTCCAAACTGCCTGCTGAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACA
TCTTAGTAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACG
GGAAGAGCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTA
GGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCT
AGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944880|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_H14, 5'
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   0.85 
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   5.4  
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral...    30   7.1  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 318 FHSPLLGESLLLFPPPATKMFQFAGLSL 235
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 351 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 458
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
           (strain HTCC2594) GN=efp PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 333 TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 461
           TV+  LWE     V L + VE    + D+ V G TASS   P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153
tr_hit_id Q6R9L5
Definition tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct OS=Zea mays
Align length 49
Score (bit) 83.6
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944880|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0007_H14, 5'
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    84   5e-15
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    80   5e-14
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            59   9e-12
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    71   3e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    71   3e-11
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    63   6e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    62   1e-08
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    45   5e-07
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   1e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    55   2e-06
tr|Q6YSQ6|Q6YSQ6_BRANA Putative uncharacterized protein orf108a ...    54   4e-06
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who...    50   2e-05
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    49   1e-04
tr|B1SRT8|B1SRT8_9BACI Putative uncharacterized protein OS=Geoba...    35   7e-04
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    46   8e-04
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    46   8e-04
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    46   8e-04
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    46   8e-04
tr|Q8TQC6|Q8TQC6_METAC Predicted protein OS=Methanosarcina aceti...    44   0.004
tr|A5BTC0|A5BTC0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    41   0.034
tr|B2DWT6|B2DWT6_STRPN Putative uncharacterized protein OS=Strep...    36   0.84 
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    36   0.84 
tr|B1SBJ3|B1SBJ3_9STRE Putative uncharacterized protein OS=Strep...    35   2.4  
tr|Q8UJ79|Q8UJ79_AGRT5 Putative uncharacterized protein OS=Agrob...    33   7.1  
tr|Q7CU94|Q7CU94_AGRT5 Putative uncharacterized protein OS=Agrob...    33   7.1  
tr|A2SDS7|A2SDS7_METPP Putative cytochrome c OS=Methylibium petr...    33   9.2  
tr|B8F6D9|B8F6D9_HAEPR Conserved stress-induced protein OS=Haemo...    33   9.2  
tr|B0QSD6|B0QSD6_HAEPR Putative uncharacterized protein OS=Haemo...    33   9.2  
tr|Q2JFC0|Q2JFC0_FRASC Putative uncharacterized protein OS=Frank...    33   9.3  

>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 38/49 (77%), Positives = 44/49 (89%)
 Frame = +3

Query: 72  EVQTTKGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 218
           EVQ  KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 58  EVQKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 106


>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 53/105 (50%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
 Frame = -2

Query: 333 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAV------WKVNLFGNLRIY 172
           F LFPF SPLL ES LL  PP TKMFQF G +L    IQ  +      W V  FG+LRI 
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCALHALWIQAWILPHYGQW-VPPFGHLRIN 125

Query: 171 TYFRLPEAFRRLPRPSSSLGA*VSTASLLSFE-LRRRILRHLDAL 40
              +LPEAFRRLPRPSS+  A  ST        LR R+L ++  L
Sbjct: 126 ACLQLPEAFRRLPRPSSAPSAKASTVRPFQLNLLRSRLLPYVTRL 170


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect(2) = 9e-12
 Identities = 38/72 (52%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -2

Query: 336 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAVWKVNLFGNLRIYTYFRL 157
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  IQQ +  +   G       F  
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 156 PE---AFRRLPR 130
           P+   A+  LPR
Sbjct: 105 PKHFVAYHALPR 116



 Score = 33.5 bits (75), Expect(2) = 9e-12
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -1

Query: 466 MLLGLERELAVLPATGLSPSGVQ 398
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23



 Score = 42.0 bits (97), Expect = 0.015
 Identities = 22/47 (46%), Positives = 24/47 (51%)
 Frame = -3

Query: 236 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 96
           L+     +Q   LTY            PKHFV  HAL RLWVPRYPP
Sbjct: 78  LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 59

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +3

Query: 87  KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 218
           KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPA
Sbjct: 1   KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPA 44


>tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 56

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 31/41 (75%), Positives = 38/41 (92%)
 Frame = +3

Query: 96  RWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 218
           RWIPR+PET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 1   RWIPRYPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 41


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = +3

Query: 321 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 473
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGH 52


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/51 (60%), Positives = 36/51 (70%)
 Frame = +3

Query: 321 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 473
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGH 52


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 44.7 bits (104), Expect(2) = 5e-07
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = -3

Query: 221 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 99
           F++QF RLTY            PKHFV  +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



 Score = 32.0 bits (71), Expect(2) = 5e-07
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 442 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 335
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein
           OS=Heliobacterium modesticaldum (strain ATCC 51547 /
           Ice1) GN=Helmi_22600 PE=4 SV=1
          Length = 107

 Score = 48.9 bits (115), Expect(2) = 1e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = -2

Query: 336 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLS 238
           RFRLFPF SPLL ES L+  PP T+MFQF GL+
Sbjct: 15  RFRLFPFRSPLLRESRLISFPPGTEMFQFPGLA 47



 Score = 26.6 bits (57), Expect(2) = 1e-06
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 146 FVVCHALLRLWVPRYPPQAFCRL 78
           F    ALLRL  PR+PP A   L
Sbjct: 83  FAAVRALLRLSAPRHPPYALTNL 105


>tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein
           OS=Marinitoga piezophila KA3 GN=MPKA3_1186 PE=4 SV=1
          Length = 182

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 36/81 (44%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = -2

Query: 333 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*-IQQAVWKVNLFGNLRIYTYFRL 157
           F L P  SPLLGES L+  P  T+MF F          +     +V+ FGN  I    RL
Sbjct: 100 FGLLPVRSPLLGESRLISFPRGTEMFHFPRYRTAFRRRVASTATQVSPFGNPGINACLRL 159

Query: 156 PEAFRRLPRPSSSLGA*VSTA 94
           P A+R LPRPSS   A  STA
Sbjct: 160 PRAYRSLPRPSSPPAAKASTA 180